RNA–Protein interactions for RNA: ENST00000257181.9

PRPF38A-201, Transcript of pre-mRNA processing factor 38A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRPF38A, Length 5,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-201ENST00000257181 VGFO15240 615 aaPredicted RBP17.77■□□□□ 0.43
PRPF38A-201ENST00000257181 MYOM3Q5VTT5 1437 aa17.76■□□□□ 0.43
PRPF38A-201ENST00000257181 KIAA0586Q9BVV6 1533 aa17.75■□□□□ 0.43
PRPF38A-201ENST00000257181 POLA1P09884 1462 aaPredicted RBP17.74■□□□□ 0.43
PRPF38A-201ENST00000257181 NESP48681 1621 aa17.74■□□□□ 0.43
PRPF38A-201ENST00000257181 CUL7Q14999 1698 aa17.74■□□□□ 0.43
PRPF38A-201ENST00000257181 TOP2BQ02880 1626 aa17.73■□□□□ 0.43
PRPF38A-201ENST00000257181 SRPK2P78362 688 aaKnown RBP17.73■□□□□ 0.43
PRPF38A-201ENST00000257181 ABCA10Q8WWZ4 1543 aa17.72■□□□□ 0.43
PRPF38A-201ENST00000257181 NPHP1O15259 732 aa17.72■□□□□ 0.43
PRPF38A-201ENST00000257181 MS4A1P11836 297 aa17.71■□□□□ 0.43
PRPF38A-201ENST00000257181 TMX4Q9H1E5 349 aaPredicted RBP17.7■□□□□ 0.42
PRPF38A-201ENST00000257181 TERF2IPQ9NYB0 399 aa17.7■□□□□ 0.42
PRPF38A-201ENST00000257181 CALD1Q05682 793 aaKnown RBP17.69■□□□□ 0.42
PRPF38A-201ENST00000257181 KIF21BO75037 1637 aa17.69■□□□□ 0.42
PRPF38A-201ENST00000257181 HNRNPMP52272 730 aaKnown RBP eCLIP17.69■□□□□ 0.42
PRPF38A-201ENST00000257181 PKD2Q13563 968 aa17.68■□□□□ 0.42
PRPF38A-201ENST00000257181 PHLDB1Q86UU1 1377 aa17.67■□□□□ 0.42
PRPF38A-201ENST00000257181 DMRT2Q9Y5R5 561 aa17.65■□□□□ 0.42
PRPF38A-201ENST00000257181 CASKIN1Q8WXD9 1431 aa17.65■□□□□ 0.42
PRPF38A-201ENST00000257181 UPF2Q9HAU5 1272 aaKnown RBP17.65■□□□□ 0.42
PRPF38A-201ENST00000257181 HECW1Q76N89 1606 aa17.65■□□□□ 0.42
PRPF38A-201ENST00000257181 DCAF11Q8TEB1 546 aa17.65■□□□□ 0.42
PRPF38A-201ENST00000257181 FYCO1Q9BQS8 1478 aa17.65■□□□□ 0.42
PRPF38A-201ENST00000257181 PRDM2Q13029 1718 aa17.65■□□□□ 0.42
PRPF38A-201ENST00000257181 TEX14Q8IWB6 1497 aa17.64■□□□□ 0.41
PRPF38A-201ENST00000257181 ARHGAP5Q13017 1502 aa17.64■□□□□ 0.41
PRPF38A-201ENST00000257181 PPP6R1Q9UPN7 881 aa17.63■□□□□ 0.41
PRPF38A-201ENST00000257181 DCAF8L1A6NGE4 600 aa17.63■□□□□ 0.41
PRPF38A-201ENST00000257181 CSB-PGBD3P0DP91 1061 aa17.63■□□□□ 0.41
PRPF38A-201ENST00000257181 HDAC5Q9UQL6 1122 aa17.62■□□□□ 0.41
PRPF38A-201ENST00000257181 MEX3CQ5U5Q3 659 aaKnown RBP17.6■□□□□ 0.41
PRPF38A-201ENST00000257181 THEMISQ8N1K5 641 aaPredicted RBP17.6■□□□□ 0.41
PRPF38A-201ENST00000257181 CCDC144AA2RUR9 1427 aa17.6■□□□□ 0.41
PRPF38A-201ENST00000257181 PLB1Q6P1J6 1458 aa17.6■□□□□ 0.41
PRPF38A-201ENST00000257181 NGDNQ8NEJ9 315 aaKnown RBP17.57■□□□□ 0.4
PRPF38A-201ENST00000257181 RTF1Q92541 710 aaKnown RBP17.57■□□□□ 0.4
PRPF38A-201ENST00000257181 CCDC9Q9Y3X0 531 aaKnown RBP17.57■□□□□ 0.4
PRPF38A-201ENST00000257181 ATF3P18847 181 aa17.56■□□□□ 0.4
PRPF38A-201ENST00000257181 WDR97A6NE52 1622 aa17.56■□□□□ 0.4
PRPF38A-201ENST00000257181 MRS2Q9HD23 443 aa17.55■□□□□ 0.4
PRPF38A-201ENST00000257181 GRIN2AQ12879 1464 aa17.55■□□□□ 0.4
PRPF38A-201ENST00000257181 MPHOSPH9Q99550 1183 aa17.55■□□□□ 0.4
PRPF38A-201ENST00000257181 EHBP1L1Q8N3D4 1523 aa17.55■□□□□ 0.4
PRPF38A-201ENST00000257181 IQGAP2Q13576 1575 aa17.54■□□□□ 0.4
PRPF38A-201ENST00000257181 ROCK2O75116 1388 aaKnown RBP17.54■□□□□ 0.4
PRPF38A-201ENST00000257181 PPM1GO15355 546 aaPredicted RBP17.53■□□□□ 0.4
PRPF38A-201ENST00000257181 PAK3O75914 559 aaPredicted RBP17.53■□□□□ 0.4
PRPF38A-201ENST00000257181 MORC1Q86VD1 984 aa17.53■□□□□ 0.4
PRPF38A-201ENST00000257181 WASHC2AQ641Q2 1341 aa17.53■□□□□ 0.4
PRPF38A-201ENST00000257181 DNAJC5BQ9UF47 199 aa17.52■□□□□ 0.4
PRPF38A-201ENST00000257181 TROQ12816 1431 aaPredicted RBP17.51■□□□□ 0.39
PRPF38A-201ENST00000257181 AKNAQ7Z591 1439 aa17.5■□□□□ 0.39
PRPF38A-201ENST00000257181 LMOD3Q0VAK6 560 aa17.5■□□□□ 0.39
PRPF38A-201ENST00000257181 PSME1Q06323 249 aa17.49■□□□□ 0.39
PRPF38A-201ENST00000257181 STK26Q9P289 416 aa17.49■□□□□ 0.39
PRPF38A-201ENST00000257181 UNC13AQ9UPW8 1703 aa17.49■□□□□ 0.39
PRPF38A-201ENST00000257181 ARXQ96QS3 562 aa17.49■□□□□ 0.39
PRPF38A-201ENST00000257181 MIA2Q96PC5 1412 aa17.49■□□□□ 0.39
PRPF38A-201ENST00000257181 PLEKHG5O94827 1062 aa17.49■□□□□ 0.39
PRPF38A-201ENST00000257181 CFAP44Q96MT7 982 aa17.48■□□□□ 0.39
PRPF38A-201ENST00000257181 EVC2Q86UK5 1308 aa17.47■□□□□ 0.39
PRPF38A-201ENST00000257181 DHX57Q6P158 1386 aaKnown RBP17.47■□□□□ 0.39
PRPF38A-201ENST00000257181 DDX10Q13206 875 aaKnown RBP17.46■□□□□ 0.39
PRPF38A-201ENST00000257181 ANO8Q9HCE9 1232 aaPredicted RBP17.46■□□□□ 0.39
PRPF38A-201ENST00000257181 RTL5Q5HYW3 569 aaPredicted RBP17.46■□□□□ 0.38
PRPF38A-201ENST00000257181 CASC1Q6TDU7 716 aa17.46■□□□□ 0.38
PRPF38A-201ENST00000257181 SLC52A1Q9NWF4 448 aa17.46■□□□□ 0.38
PRPF38A-201ENST00000257181 RRBP1Q9P2E9 1410 aaKnown RBP17.45■□□□□ 0.38
PRPF38A-201ENST00000257181 ANKLE2Q86XL3 938 aa17.45■□□□□ 0.38
PRPF38A-201ENST00000257181 KIF15Q9NS87 1388 aa17.45■□□□□ 0.38
PRPF38A-201ENST00000257181 CD109Q6YHK3 1445 aa17.45■□□□□ 0.38
PRPF38A-201ENST00000257181 GOLGA2Q08379 1002 aa17.43■□□□□ 0.38
PRPF38A-201ENST00000257181 FAM9BQ8IZU0 186 aa17.43■□□□□ 0.38
PRPF38A-201ENST00000257181 EVA1CP58658 441 aa17.42■□□□□ 0.38
PRPF38A-201ENST00000257181 KTN1Q86UP2 1357 aaKnown RBP17.42■□□□□ 0.38
PRPF38A-201ENST00000257181 RPGRIP1LQ68CZ1 1315 aa17.42■□□□□ 0.38
PRPF38A-201ENST00000257181 HNRNPUQ00839 825 aaKnown RBP eCLIP17.41■□□□□ 0.38
PRPF38A-201ENST00000257181 SCAPERQ9BY12 1400 aa17.4■□□□□ 0.38
PRPF38A-201ENST00000257181 SENP3Q9H4L4 574 aaPredicted RBP17.39■□□□□ 0.37
PRPF38A-201ENST00000257181 URB2Q14146 1524 aaKnown RBP17.39■□□□□ 0.37
PRPF38A-201ENST00000257181 RALBP1Q15311 655 aa17.38■□□□□ 0.37
PRPF38A-201ENST00000257181 U2SURPO15042 1029 aaKnown RBP17.38■□□□□ 0.37
PRPF38A-201ENST00000257181 HFM1A2PYH4 1435 aa17.38■□□□□ 0.37
PRPF38A-201ENST00000257181 GPRASP1Q5JY77 1395 aa17.38■□□□□ 0.37
PRPF38A-201ENST00000257181 PRXQ9BXM0 1461 aa17.37■□□□□ 0.37
PRPF38A-201ENST00000257181 AMPHP49418 695 aa17.37■□□□□ 0.37
PRPF38A-201ENST00000257181 FGD6Q6ZV73 1430 aa17.37■□□□□ 0.37
PRPF38A-201ENST00000257181 PHF23Q9BUL5 403 aaPredicted RBP17.36■□□□□ 0.37
PRPF38A-201ENST00000257181 KIF14Q15058 1648 aa17.35■□□□□ 0.37
PRPF38A-201ENST00000257181 DENND4BO75064 1496 aaPredicted RBP17.35■□□□□ 0.37
PRPF38A-201ENST00000257181 KANK4Q5T7N3 995 aaPredicted RBP17.35■□□□□ 0.37
PRPF38A-201ENST00000257181 FTSJ3Q8IY81 847 aaKnown RBP17.35■□□□□ 0.37
PRPF38A-201ENST00000257181 HSP90AA1P07900 732 aaKnown RBP17.34■□□□□ 0.37
PRPF38A-201ENST00000257181 SF3B2Q13435 895 aaKnown RBP17.34■□□□□ 0.37
PRPF38A-201ENST00000257181 ANKRD50Q9ULJ7 1429 aa17.34■□□□□ 0.37
PRPF38A-201ENST00000257181 NCOA2Q15596 1464 aa17.34■□□□□ 0.37
PRPF38A-201ENST00000257181 COG3Q96JB2 828 aa17.33■□□□□ 0.37
PRPF38A-201ENST00000257181 CGNL1Q0VF96 1302 aa17.33■□□□□ 0.37
PRPF38A-201ENST00000257181 WDR62O43379 1518 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms