RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 CCDC18Q5T9S5 1454 aa19.46■□□□□ 0.71
SDC1-201ENST00000254351 ZBED9Q6R2W3 1325 aa19.45■□□□□ 0.7
SDC1-201ENST00000254351 L3MBTL2Q969R5 705 aa19.44■□□□□ 0.7
SDC1-201ENST00000254351 SKAP1Q86WV1 359 aa19.43■□□□□ 0.7
SDC1-201ENST00000254351 PTPRKQ15262 1439 aa19.43■□□□□ 0.7
SDC1-201ENST00000254351 CTTNBP2Q8WZ74 1663 aa19.42■□□□□ 0.7
SDC1-201ENST00000254351 SYNJ2O15056 1496 aa19.41■□□□□ 0.7
SDC1-201ENST00000254351 EIF5BO60841 1220 aaKnown RBP19.41■□□□□ 0.7
SDC1-201ENST00000254351 GRIN2AQ12879 1464 aa19.39■□□□□ 0.7
SDC1-201ENST00000254351 MTUS2Q5JR59 1369 aa19.39■□□□□ 0.7
SDC1-201ENST00000254351 CHMP7Q8WUX9 453 aaPredicted RBP19.36■□□□□ 0.69
SDC1-201ENST00000254351 CNTLNQ9NXG0 1405 aa19.36■□□□□ 0.69
SDC1-201ENST00000254351 SLC4A3P48751 1232 aa19.34■□□□□ 0.69
SDC1-201ENST00000254351 NBPF8Q3BBV2 869 aa19.34■□□□□ 0.69
SDC1-201ENST00000254351 BRPF3Q9ULD4 1205 aa19.34■□□□□ 0.69
SDC1-201ENST00000254351 UACAQ9BZF9 1416 aa19.34■□□□□ 0.69
SDC1-201ENST00000254351 PCF11O94913 1555 aaKnown RBP19.33■□□□□ 0.69
SDC1-201ENST00000254351 CCDC7Q96M83 1385 aa19.33■□□□□ 0.68
SDC1-201ENST00000254351 NUDCQ9Y266 331 aa19.32■□□□□ 0.68
SDC1-201ENST00000254351 KIF7Q2M1P5 1343 aa19.32■□□□□ 0.68
SDC1-201ENST00000254351 FGD6Q6ZV73 1430 aa19.32■□□□□ 0.68
SDC1-201ENST00000254351 EXOC6Q8TAG9 804 aa19.31■□□□□ 0.68
SDC1-201ENST00000254351 FBLN2P98095 1184 aa19.3■□□□□ 0.68
SDC1-201ENST00000254351 IQGAP2Q13576 1575 aa19.29■□□□□ 0.68
SDC1-201ENST00000254351 EFCAB5A4FU69 1503 aa19.28■□□□□ 0.68
SDC1-201ENST00000254351 MPHOSPH9Q99550 1183 aa19.28■□□□□ 0.68
SDC1-201ENST00000254351 KIAA0586Q9BVV6 1533 aa19.28■□□□□ 0.68
SDC1-201ENST00000254351 TMC1Q8TDI8 760 aa19.27■□□□□ 0.68
SDC1-201ENST00000254351 NUP160Q12769 1436 aa19.27■□□□□ 0.67
SDC1-201ENST00000254351 NAIPQ13075 1403 aa19.27■□□□□ 0.67
SDC1-201ENST00000254351 CEP170Q5SW79 1584 aa19.27■□□□□ 0.67
SDC1-201ENST00000254351 PDE4AP27815 886 aa19.25■□□□□ 0.67
SDC1-201ENST00000254351 HFM1A2PYH4 1435 aa19.24■□□□□ 0.67
SDC1-201ENST00000254351 PLIN1O60240 522 aa19.24■□□□□ 0.67
SDC1-201ENST00000254351 SAMD9Q5K651 1589 aa19.23■□□□□ 0.67
SDC1-201ENST00000254351 CHD1O14646 1710 aa19.22■□□□□ 0.67
SDC1-201ENST00000254351 FMN1Q68DA7 1419 aa19.22■□□□□ 0.67
SDC1-201ENST00000254351 UGGT2Q9NYU1 1516 aa19.2■□□□□ 0.66
SDC1-201ENST00000254351 KDM5BQ9UGL1 1544 aa19.2■□□□□ 0.66
SDC1-201ENST00000254351 MAP3K1Q13233 1512 aa19.19■□□□□ 0.66
SDC1-201ENST00000254351 PTPN23Q9H3S7 1636 aa19.18■□□□□ 0.66
SDC1-201ENST00000254351 SMG6Q86US8 1419 aaKnown RBP19.17■□□□□ 0.66
SDC1-201ENST00000254351 SLC4A1APQ9BWU0 796 aaKnown RBP19.17■□□□□ 0.66
SDC1-201ENST00000254351 NCOA1Q15788 1441 aa19.16■□□□□ 0.66
SDC1-201ENST00000254351 NCOA2Q15596 1464 aa19.13■□□□□ 0.65
SDC1-201ENST00000254351 RRP1P56182 461 aaKnown RBP19.12■□□□□ 0.65
SDC1-201ENST00000254351 DAXXQ9UER7 740 aaPredicted RBP19.12■□□□□ 0.65
SDC1-201ENST00000254351 CDCA7LQ96GN5 454 aa19.12■□□□□ 0.65
SDC1-201ENST00000254351 KDM2AQ9Y2K7 1162 aa19.11■□□□□ 0.65
SDC1-201ENST00000254351 CASKIN1Q8WXD9 1431 aa19.11■□□□□ 0.65
SDC1-201ENST00000254351 PNISRQ8TF01 805 aaKnown RBP19.11■□□□□ 0.65
SDC1-201ENST00000254351 ARXQ96QS3 562 aa19.11■□□□□ 0.65
SDC1-201ENST00000254351 RCAN3Q9UKA8 241 aa19.11■□□□□ 0.65
SDC1-201ENST00000254351 DISP1Q96F81 1524 aa19.11■□□□□ 0.65
SDC1-201ENST00000254351 BACH2Q9BYV9 841 aa19.1■□□□□ 0.65
SDC1-201ENST00000254351 KIAA0556O60303 1618 aa19.1■□□□□ 0.65
SDC1-201ENST00000254351 FRAT1Q92837 279 aaPredicted RBP19.09■□□□□ 0.65
SDC1-201ENST00000254351 JPH4Q96JJ6 628 aa19.09■□□□□ 0.65
SDC1-201ENST00000254351 CFAP43Q8NDM7 1665 aa19.08■□□□□ 0.64
SDC1-201ENST00000254351 TCERG1O14776 1098 aaKnown RBP19.08■□□□□ 0.64
SDC1-201ENST00000254351 GSE1Q14687 1217 aa19.07■□□□□ 0.64
SDC1-201ENST00000254351 DENND4BO75064 1496 aaPredicted RBP19.07■□□□□ 0.64
SDC1-201ENST00000254351 MYOM3Q5VTT5 1437 aa19.07■□□□□ 0.64
SDC1-201ENST00000254351 NFKBIBQ15653 356 aa19.07■□□□□ 0.64
SDC1-201ENST00000254351 FYCO1Q9BQS8 1478 aa19.07■□□□□ 0.64
SDC1-201ENST00000254351 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.06■□□□□ 0.649e-6■■■■□ 19.8
SDC1-201ENST00000254351 PPM1GO15355 546 aaPredicted RBP19.06■□□□□ 0.64
SDC1-201ENST00000254351 RNF123Q5XPI4 1314 aa19.05■□□□□ 0.64
SDC1-201ENST00000254351 ZNF644Q9H582 1327 aaPredicted RBP19.04■□□□□ 0.64
SDC1-201ENST00000254351 KDM6BO15054 1643 aa19.04■□□□□ 0.64
SDC1-201ENST00000254351 CARMIL2Q6F5E8 1435 aa19.04■□□□□ 0.64
SDC1-201ENST00000254351 CLASP1Q7Z460 1538 aa19.03■□□□□ 0.64
SDC1-201ENST00000254351 SHROOM2Q13796 1616 aa19.02■□□□□ 0.63
SDC1-201ENST00000254351 CRBNQ96SW2 442 aa19.01■□□□□ 0.63
SDC1-201ENST00000254351 DHX29Q7Z478 1369 aaKnown RBP19.01■□□□□ 0.63
SDC1-201ENST00000254351 USP35Q9P2H5 1018 aa19■□□□□ 0.63
SDC1-201ENST00000254351 RGS3P49796 1198 aa19■□□□□ 0.63
SDC1-201ENST00000254351 FRAT2O75474 233 aaPredicted RBP18.99■□□□□ 0.63
SDC1-201ENST00000254351 ZNF777Q9ULD5 760 aaPredicted RBP18.99■□□□□ 0.63
SDC1-201ENST00000254351 USP47Q96K76 1375 aa18.99■□□□□ 0.63
SDC1-201ENST00000254351 PRG4Q92954 1404 aaPredicted RBP18.99■□□□□ 0.63
SDC1-201ENST00000254351 C20orf194Q5TEA3 1177 aa18.98■□□□□ 0.63
SDC1-201ENST00000254351 CARD11Q9BXL7 1154 aa18.97■□□□□ 0.63
SDC1-201ENST00000254351 WASHC2CQ9Y4E1 1318 aa18.97■□□□□ 0.63
SDC1-201ENST00000254351 CC2D1BQ5T0F9 858 aaKnown RBP18.96■□□□□ 0.63
SDC1-201ENST00000254351 ST20-MTHFSA0A0A6YYL1 179 aa18.95■□□□□ 0.62
SDC1-201ENST00000254351 ANKRD30BQ9BXX2 1392 aa18.93■□□□□ 0.62
SDC1-201ENST00000254351 HECW1Q76N89 1606 aa18.92■□□□□ 0.62
SDC1-201ENST00000254351 SPATA31E1Q6ZUB1 1445 aa18.91■□□□□ 0.62
SDC1-201ENST00000254351 UBE2Q2Q8WVN8 375 aa18.91■□□□□ 0.62
SDC1-201ENST00000254351 DDRGK1Q96HY6 314 aa18.91■□□□□ 0.62
SDC1-201ENST00000254351 OSCARQ8IYS5 282 aa18.9■□□□□ 0.62
SDC1-201ENST00000254351 DCAF11Q8TEB1 546 aa18.9■□□□□ 0.62
SDC1-201ENST00000254351 PKD2Q13563 968 aa18.89■□□□□ 0.62
SDC1-201ENST00000254351 RAPGEF6Q8TEU7 1601 aa18.88■□□□□ 0.61
SDC1-201ENST00000254351 LRRIQ1Q96JM4 1722 aa18.88■□□□□ 0.61
SDC1-201ENST00000254351 MS4A1P11836 297 aa18.87■□□□□ 0.61
SDC1-201ENST00000254351 ERCC6L2Q5T890 1561 aa18.87■□□□□ 0.61
SDC1-201ENST00000254351 PTPRGP23470 1445 aa18.86■□□□□ 0.61
SDC1-201ENST00000254351 PLB1Q6P1J6 1458 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms