RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 NEUROD2Q15784 382 aa13.25□□□□□ -0.29
VCL-201ENST00000211998 GOLGA6L4A6NEF3 574 aa13.24□□□□□ -0.29
VCL-201ENST00000211998 CCNB3Q8WWL7 1395 aa13.24□□□□□ -0.29
VCL-201ENST00000211998 CHMP4BQ9H444 224 aaKnown RBP13.24□□□□□ -0.29
VCL-201ENST00000211998 POGKQ9P215 609 aa13.23□□□□□ -0.29
VCL-201ENST00000211998 SLC4A3P48751 1232 aa13.22□□□□□ -0.29
VCL-201ENST00000211998 IL27Q8NEV9 243 aa13.22□□□□□ -0.29
VCL-201ENST00000211998 FAM13BQ9NYF5 915 aa13.22□□□□□ -0.29
VCL-201ENST00000211998 RCAN3Q9UKA8 241 aa13.22□□□□□ -0.29
VCL-201ENST00000211998 SENP3Q9H4L4 574 aaPredicted RBP13.22□□□□□ -0.29
VCL-201ENST00000211998 ZNF771Q7L3S4 317 aaPredicted RBP13.21□□□□□ -0.29
VCL-201ENST00000211998 KANK1Q14678 1352 aa13.21□□□□□ -0.29
VCL-201ENST00000211998 PLEKHG5O94827 1062 aa13.21□□□□□ -0.29
VCL-201ENST00000211998 MS4A1P11836 297 aa13.2□□□□□ -0.3
VCL-201ENST00000211998 PDE4AP27815 886 aa13.19□□□□□ -0.3
VCL-201ENST00000211998 CALD1Q05682 793 aaKnown RBP13.18□□□□□ -0.3
VCL-201ENST00000211998 HDGFP51858 240 aaKnown RBP13.18□□□□□ -0.3
VCL-201ENST00000211998 CC2D1BQ5T0F9 858 aaKnown RBP13.17□□□□□ -0.3
VCL-201ENST00000211998 SYAP1Q96A49 352 aaPredicted RBP13.17□□□□□ -0.3
VCL-201ENST00000211998 CARMIL1Q5VZK9 1371 aa13.15□□□□□ -0.3
VCL-201ENST00000211998 TMF1P82094 1093 aa13.15□□□□□ -0.3
VCL-201ENST00000211998 DDX11L8A8MPP1 907 aa13.15□□□□□ -0.3
VCL-201ENST00000211998 BRPF3Q9ULD4 1205 aa13.14□□□□□ -0.31
VCL-201ENST00000211998 MFAP1P55081 439 aaKnown RBP13.14□□□□□ -0.31
VCL-201ENST00000211998 EIF4G1Q04637 1599 aaKnown RBP13.14□□□□□ -0.31
VCL-201ENST00000211998 CUX2O14529 1486 aa13.13□□□□□ -0.31
VCL-201ENST00000211998 FAM43AQ8N2R8 423 aa13.13□□□□□ -0.31
VCL-201ENST00000211998 MCCP23508 829 aa13.12□□□□□ -0.31
VCL-201ENST00000211998 HSPA5P11021 654 aaKnown RBP13.12□□□□□ -0.31
VCL-201ENST00000211998 GOLGA6L1Q8N7Z2 621 aa13.11□□□□□ -0.31
VCL-201ENST00000211998 TAOK2Q9UL54 1235 aa13.11□□□□□ -0.31
VCL-201ENST00000211998 FOXD4L1Q9NU39 408 aa13.11□□□□□ -0.31
VCL-201ENST00000211998 LMOD2Q6P5Q4 547 aa13.11□□□□□ -0.31
VCL-201ENST00000211998 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.1□□□□□ -0.31
VCL-201ENST00000211998 FGD1P98174 961 aa13.1□□□□□ -0.31
VCL-201ENST00000211998 CFAP44Q96MT7 982 aa13.09□□□□□ -0.31
VCL-201ENST00000211998 KCNJ4P48050 445 aa13.09□□□□□ -0.31
VCL-201ENST00000211998 RWDD1Q9H446 243 aaPredicted RBP13.09□□□□□ -0.31
VCL-201ENST00000211998 U2SURPO15042 1029 aaKnown RBP13.08□□□□□ -0.32
VCL-201ENST00000211998 DCAF11Q8TEB1 546 aa13.08□□□□□ -0.32
VCL-201ENST00000211998 CARMIL2Q6F5E8 1435 aa13.08□□□□□ -0.32
VCL-201ENST00000211998 SETQ01105 290 aaPredicted RBP13.08□□□□□ -0.32
VCL-201ENST00000211998 NFKBIBQ15653 356 aa13.08□□□□□ -0.32
VCL-201ENST00000211998 ARHGAP35Q9NRY4 1499 aa13.07□□□□□ -0.32
VCL-201ENST00000211998 FAM161AQ3B820 660 aa13.07□□□□□ -0.32
VCL-201ENST00000211998 OS9Q13438 667 aaPredicted RBP13.07□□□□□ -0.32
VCL-201ENST00000211998 SKOR2Q2VWA4 1001 aaPredicted RBP13.06□□□□□ -0.32
VCL-201ENST00000211998 MAP7D2Q96T17 732 aa13.06□□□□□ -0.32
VCL-201ENST00000211998 NAP1L2Q9ULW6 460 aaPredicted RBP13.06□□□□□ -0.32
VCL-201ENST00000211998 DDX49Q9Y6V7 483 aaKnown RBP13.06□□□□□ -0.32
VCL-201ENST00000211998 CSPP1Q1MSJ5 1256 aa13.06□□□□□ -0.32
VCL-201ENST00000211998 NPHP1O15259 732 aa13.05□□□□□ -0.32
VCL-201ENST00000211998 APPP05067 770 aa13.05□□□□□ -0.32
VCL-201ENST00000211998 SETD5Q9C0A6 1442 aa13.05□□□□□ -0.32
VCL-201ENST00000211998 PMFBP1Q8TBY8 1022 aa13.04□□□□□ -0.32
VCL-201ENST00000211998 TPM2P07951 284 aa13.04□□□□□ -0.32
VCL-201ENST00000211998 PHF14O94880 888 aa13.03□□□□□ -0.32
VCL-201ENST00000211998 SRPK2P78362 688 aaKnown RBP13.03□□□□□ -0.32
VCL-201ENST00000211998 MTERF4Q7Z6M4 381 aaKnown RBP13.02□□□□□ -0.32
VCL-201ENST00000211998 MORC1Q86VD1 984 aa13.02□□□□□ -0.32
VCL-201ENST00000211998 VPS8Q8N3P4 1428 aa13.02□□□□□ -0.32
VCL-201ENST00000211998 UBE2Q2Q8WVN8 375 aa13.02□□□□□ -0.32
VCL-201ENST00000211998 NOC3LQ8WTT2 800 aaKnown RBP13.02□□□□□ -0.32
VCL-201ENST00000211998 R3HCC1Q9Y3T6 440 aaKnown RBP13.02□□□□□ -0.32
VCL-201ENST00000211998 PDS5BQ9NTI5 1447 aa13.02□□□□□ -0.33
VCL-201ENST00000211998 CECR2Q9BXF3 1484 aa13.02□□□□□ -0.33
VCL-201ENST00000211998 SMARCA2P51531 1590 aa13.02□□□□□ -0.33
VCL-201ENST00000211998 EXOC6Q8TAG9 804 aa13.01□□□□□ -0.33
VCL-201ENST00000211998 HTATSF1O43719 755 aaKnown RBP13□□□□□ -0.33
VCL-201ENST00000211998 FMN1Q68DA7 1419 aa13□□□□□ -0.33
VCL-201ENST00000211998 HDGFL2Q7Z4V5 671 aaPredicted RBP13□□□□□ -0.33
VCL-201ENST00000211998 GOLGA2Q08379 1002 aa13□□□□□ -0.33
VCL-201ENST00000211998 CENPQQ7L2Z9 268 aaPredicted RBP12.99□□□□□ -0.33
VCL-201ENST00000211998 SOGA1O94964 1423 aa12.99□□□□□ -0.33
VCL-201ENST00000211998 TULP1O00294 542 aaPredicted RBP12.99□□□□□ -0.33
VCL-201ENST00000211998 RRP9O43818 475 aaKnown RBP12.99□□□□□ -0.33
VCL-201ENST00000211998 KTN1Q86UP2 1357 aaKnown RBP12.99□□□□□ -0.33
VCL-201ENST00000211998 PAK3O75914 559 aaPredicted RBP12.99□□□□□ -0.33
VCL-201ENST00000211998 RBM10P98175 930 aaKnown RBP12.99□□□□□ -0.33
VCL-201ENST00000211998 FOXD4L5Q5VV16 416 aaPredicted RBP12.98□□□□□ -0.33
VCL-201ENST00000211998 FOXD4L4Q8WXT5 416 aaPredicted RBP12.98□□□□□ -0.33
VCL-201ENST00000211998 APBB1O00213 710 aa12.98□□□□□ -0.33
VCL-201ENST00000211998 CALRP27797 417 aaKnown RBP12.98□□□□□ -0.33
VCL-201ENST00000211998 TEX35Q5T0J7 233 aa12.98□□□□□ -0.33
VCL-201ENST00000211998 TPM4P67936 248 aa12.98□□□□□ -0.33
VCL-201ENST00000211998 RTF1Q92541 710 aaKnown RBP12.98□□□□□ -0.33
VCL-201ENST00000211998 ITPRIPQ8IWB1 547 aa12.97□□□□□ -0.33
VCL-201ENST00000211998 MRE11P49959 708 aa12.97□□□□□ -0.33
VCL-201ENST00000211998 PKD2Q13563 968 aa12.97□□□□□ -0.33
VCL-201ENST00000211998 MLECQ14165 292 aa12.97□□□□□ -0.33
VCL-201ENST00000211998 ZNF592Q92610 1267 aa12.96□□□□□ -0.33
VCL-201ENST00000211998 TRHP20396 242 aaPredicted RBP12.96□□□□□ -0.33
VCL-201ENST00000211998 PDE3BQ13370 1112 aa12.96□□□□□ -0.33
VCL-201ENST00000211998 EFCAB2Q5VUJ9 269 aa12.96□□□□□ -0.33
VCL-201ENST00000211998 RALBP1Q15311 655 aa12.96□□□□□ -0.34
VCL-201ENST00000211998 ANKRD30AQ9BXX3 1397 aa12.96□□□□□ -0.34
VCL-201ENST00000211998 IPO8O15397 1037 aaKnown RBP12.95□□□□□ -0.34
VCL-201ENST00000211998 RRP1P56182 461 aaKnown RBP12.95□□□□□ -0.34
VCL-201ENST00000211998 GGT6Q6P531 493 aa12.95□□□□□ -0.34
VCL-201ENST00000211998 CHMP4AQ9BY43 222 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms