RNA–Protein interactions for RNA: ENSMUST00000173369.1

Trim39-205, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

TSL 1 (best) BASIC

Gene Trim39, Length 2,914 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-205ENSMUST00000173369 NexmifQ5DTT1 1515 aa12.77□□□□□ -0.37
Trim39-205ENSMUST00000173369 Tdrd9Q14BI7 1383 aa12.75□□□□□ -0.37
Trim39-205ENSMUST00000173369 Dnajc5gQ8C632 165 aa12.75□□□□□ -0.37
Trim39-205ENSMUST00000173369 Fam163aQ8CAA5 168 aa12.75□□□□□ -0.37
Trim39-205ENSMUST00000173369 Chic2Q9D9G3 165 aa12.75□□□□□ -0.37
Trim39-205ENSMUST00000173369 Cul7Q8VE73 1689 aa12.74□□□□□ -0.37
Trim39-205ENSMUST00000173369 Zbtb7cQ8VCZ7 619 aa12.74□□□□□ -0.37
Trim39-205ENSMUST00000173369 Fam50aQ9WV03 339 aaKnown RBP12.74□□□□□ -0.37
Trim39-205ENSMUST00000173369 NhsB1AV60 1647 aa12.73□□□□□ -0.37
Trim39-205ENSMUST00000173369 Myt1Q8CFC2 1127 aa12.72□□□□□ -0.37
Trim39-205ENSMUST00000173369 DiexfQ8BTT6 772 aaKnown RBP12.71□□□□□ -0.37
Trim39-205ENSMUST00000173369 Gcc2Q8CHG3 1679 aa12.7□□□□□ -0.38
Trim39-205ENSMUST00000173369 A2mQ6GQT1 1474 aa12.69□□□□□ -0.38
Trim39-205ENSMUST00000173369 Dhx57Q6P5D3 1388 aaKnown RBP12.69□□□□□ -0.38
Trim39-205ENSMUST00000173369 Arhgap5P97393 1501 aa12.67□□□□□ -0.38
Trim39-205ENSMUST00000173369 Trappc8E9PWG2 1437 aa12.67□□□□□ -0.38
Trim39-205ENSMUST00000173369 Arhgef40Q3UPH7 1517 aa12.66□□□□□ -0.38
Trim39-205ENSMUST00000173369 Kiaa1551Q5DTW7 1521 aa12.66□□□□□ -0.38
Trim39-205ENSMUST00000173369 Cdc42bpaQ3UU96 1719 aa12.65□□□□□ -0.38
Trim39-205ENSMUST00000173369 Sart1Q9Z315 806 aaKnown RBP12.65□□□□□ -0.38
Trim39-205ENSMUST00000173369 Mapkbp1Q6NS57 1503 aa12.65□□□□□ -0.39
Trim39-205ENSMUST00000173369 Mlh3A0A1Y7VMP7 1443 aa12.64□□□□□ -0.39
Trim39-205ENSMUST00000173369 Clasp1Q80TV8 1535 aaKnown RBP12.63□□□□□ -0.39
Trim39-205ENSMUST00000173369 Abca8bQ8K440 1620 aa12.63□□□□□ -0.39
Trim39-205ENSMUST00000173369 Cabp1Q9JLK7 227 aa12.62□□□□□ -0.39
Trim39-205ENSMUST00000173369 3425401B19RikD3Z1D3 1412 aa12.62□□□□□ -0.39
Trim39-205ENSMUST00000173369 Peg3Q3URU2 1571 aa12.62□□□□□ -0.39
Trim39-205ENSMUST00000173369 Pcgf6Q99NA9 353 aa12.61□□□□□ -0.39
Trim39-205ENSMUST00000173369 Lemd3Q9WU40 921 aa12.61□□□□□ -0.39
Trim39-205ENSMUST00000173369 Zfyve16Q80U44 1528 aa12.61□□□□□ -0.39
Trim39-205ENSMUST00000173369 Fndc1E9Q043 1732 aa12.6□□□□□ -0.39
Trim39-205ENSMUST00000173369 Adcy10Q8C0T9 1614 aa12.6□□□□□ -0.39
Trim39-205ENSMUST00000173369 Ttc37F8VPK0 1563 aa12.59□□□□□ -0.39
Trim39-205ENSMUST00000173369 Fam71e1A1L3C1 212 aa12.59□□□□□ -0.39
Trim39-205ENSMUST00000173369 Rrp7aQ9D1C9 280 aaKnown RBP12.59□□□□□ -0.39
Trim39-205ENSMUST00000173369 Map3k5O35099 1380 aa12.59□□□□□ -0.39
Trim39-205ENSMUST00000173369 Kdm6bQ5NCY0 1641 aa12.59□□□□□ -0.39
Trim39-205ENSMUST00000173369 Fam208aQ69ZR9 1610 aaKnown RBP12.58□□□□□ -0.4
Trim39-205ENSMUST00000173369 Lmtk2Q3TYD6 1471 aa12.58□□□□□ -0.4
Trim39-205ENSMUST00000173369 MlecQ6ZQI3 291 aaKnown RBP12.56□□□□□ -0.4
Trim39-205ENSMUST00000173369 Mtus2Q3UHD3 1353 aa12.55□□□□□ -0.4
Trim39-205ENSMUST00000173369 Ptch1Q61115 1434 aa12.55□□□□□ -0.4
Trim39-205ENSMUST00000173369 Abcc5Q9R1X5 1436 aa12.54□□□□□ -0.4
Trim39-205ENSMUST00000173369 Hnrnpul2Q00PI9 745 aaKnown RBP12.53□□□□□ -0.4
Trim39-205ENSMUST00000173369 Abca9Q8K449 1623 aa12.53□□□□□ -0.4
Trim39-205ENSMUST00000173369 Kiaa1210E9Q0C6 1637 aa12.51□□□□□ -0.41
Trim39-205ENSMUST00000173369 ArxO35085 564 aa12.51□□□□□ -0.41
Trim39-205ENSMUST00000173369 Cdk11bP24788 784 aaKnown RBP12.51□□□□□ -0.41
Trim39-205ENSMUST00000173369 Senp3Q9EP97 568 aaKnown RBP12.5□□□□□ -0.41
Trim39-205ENSMUST00000173369 Yeats2Q3TUF7 1407 aa12.5□□□□□ -0.41
Trim39-205ENSMUST00000173369 Zfp644E9QA22 1323 aa12.5□□□□□ -0.41
Trim39-205ENSMUST00000173369 Plekhh2Q8C115 1491 aa12.49□□□□□ -0.41
Trim39-205ENSMUST00000173369 AglF8VPN4 1532 aa12.49□□□□□ -0.41
Trim39-205ENSMUST00000173369 AdgbG3UZ78 1657 aa12.49□□□□□ -0.41
Trim39-205ENSMUST00000173369 Rnf17Q99MV7 1640 aa12.48□□□□□ -0.41
Trim39-205ENSMUST00000173369 OvosQ3UU35 1456 aa12.48□□□□□ -0.41
Trim39-205ENSMUST00000173369 Mier1Q5UAK0 511 aa12.47□□□□□ -0.41
Trim39-205ENSMUST00000173369 Kif3bQ61771 747 aa12.47□□□□□ -0.41
Trim39-205ENSMUST00000173369 Kidins220E9Q9B7 1793 aa12.46□□□□□ -0.41
Trim39-205ENSMUST00000173369 Caskin1Q6P9K8 1431 aa12.45□□□□□ -0.42
Trim39-205ENSMUST00000173369 Gm32742A0A1B0GT42 1604 aa12.45□□□□□ -0.42
Trim39-205ENSMUST00000173369 Adgrb2Q8CGM1 1561 aa12.45□□□□□ -0.42
Trim39-205ENSMUST00000173369 MyclP10166 368 aa12.44□□□□□ -0.42
Trim39-205ENSMUST00000173369 Safb2Q80YR5 991 aaKnown RBP12.44□□□□□ -0.42
Trim39-205ENSMUST00000173369 NclP09405 707 aaKnown RBP12.42□□□□□ -0.42
Trim39-205ENSMUST00000173369 Eid3Q3V124 375 aa12.42□□□□□ -0.42
Trim39-205ENSMUST00000173369 Afap1Q80YS6 731 aa12.42□□□□□ -0.42
Trim39-205ENSMUST00000173369 Abcc3B2RX12 1523 aa12.41□□□□□ -0.42
Trim39-205ENSMUST00000173369 Cdc42bpbQ7TT50 1713 aa12.4□□□□□ -0.42
Trim39-205ENSMUST00000173369 Naip2Q9QUK4 1447 aa12.39□□□□□ -0.43
Trim39-205ENSMUST00000173369 CenpbP27790 599 aa12.39□□□□□ -0.43
Trim39-205ENSMUST00000173369 Synj2Q9D2G5 1434 aa12.38□□□□□ -0.43
Trim39-205ENSMUST00000173369 Spag9Q58A65 1321 aaKnown RBP12.38□□□□□ -0.43
Trim39-205ENSMUST00000173369 Ncapd3Q6ZQK0 1506 aa12.38□□□□□ -0.43
Trim39-205ENSMUST00000173369 Cfap65Q3V0B4 1847 aa12.38□□□□□ -0.43
Trim39-205ENSMUST00000173369 Dip2cE9PWR4 1557 aa12.38□□□□□ -0.43
Trim39-205ENSMUST00000173369 Cfap74Q3UY96 1578 aa12.38□□□□□ -0.43
Trim39-205ENSMUST00000173369 Arid3aQ62431 601 aa12.37□□□□□ -0.43
Trim39-205ENSMUST00000173369 SphkapQ6NSW3 1687 aa12.37□□□□□ -0.43
Trim39-205ENSMUST00000173369 Qser1A2BIE1 1698 aa12.35□□□□□ -0.43
Trim39-205ENSMUST00000173369 Pdcd11Q6NS46 1862 aaKnown RBP12.35□□□□□ -0.43
Trim39-205ENSMUST00000173369 Gm13697A2AK42 830 aa12.34□□□□□ -0.43
Trim39-205ENSMUST00000173369 Ssh2Q5SW75 1423 aa12.34□□□□□ -0.43
Trim39-205ENSMUST00000173369 Hecw2Q6I6G8 1578 aa12.34□□□□□ -0.43
Trim39-205ENSMUST00000173369 Il16O54824 1322 aa12.34□□□□□ -0.43
Trim39-205ENSMUST00000173369 Erich6D3Z6S9 713 aa12.34□□□□□ -0.43
Trim39-205ENSMUST00000173369 Map4P27546 1125 aaKnown RBP12.33□□□□□ -0.44
Trim39-205ENSMUST00000173369 NpatQ8BMA5 1420 aa12.32□□□□□ -0.44
Trim39-205ENSMUST00000173369 Kdm3bQ6ZPY7 1562 aa12.32□□□□□ -0.44
Trim39-205ENSMUST00000173369 Prdm16A2A935 1275 aa12.32□□□□□ -0.44
Trim39-205ENSMUST00000173369 RereQ80TZ9 1558 aa12.32□□□□□ -0.44
Trim39-205ENSMUST00000173369 Prdm10Q3UTQ7 1184 aa12.31□□□□□ -0.44
Trim39-205ENSMUST00000173369 Trak1Q6PD31 939 aa12.31□□□□□ -0.44
Trim39-205ENSMUST00000173369 Kdm5cP41230 1554 aa12.31□□□□□ -0.44
Trim39-205ENSMUST00000173369 UacaQ8CGB3 1411 aa12.3□□□□□ -0.44
Trim39-205ENSMUST00000173369 Pde4cQ3UEI1 686 aa12.3□□□□□ -0.44
Trim39-205ENSMUST00000173369 Cul9Q80TT8 1865 aa12.3□□□□□ -0.44
Trim39-205ENSMUST00000173369 Naip6Q9JIB6 1403 aa12.29□□□□□ -0.44
Trim39-205ENSMUST00000173369 Nos1Q9Z0J4 1429 aa12.29□□□□□ -0.44
Trim39-205ENSMUST00000173369 Atp10aO54827 1508 aa12.29□□□□□ -0.44
Retrieved 100 of 22,080 RNA–protein pairs in 42.9 ms