RNA–Protein interactions for RNA: ENSMUST00000082209.12

Scn8a-201, Transcript of Sodium channel protein type 8 subunit alpha, mousemouse

APPRIS ALT1 TSL 5 BASIC

Gene Scn8a, Length 11,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Scn8a-201ENSMUST00000082209 Synj1Q8CHC4 1574 aa13.23□□□□□ -0.29
Scn8a-201ENSMUST00000082209 Rrp7aQ9D1C9 280 aaKnown RBP13.23□□□□□ -0.29
Scn8a-201ENSMUST00000082209 Sart3Q9JLI8 962 aaKnown RBP13.22□□□□□ -0.29
Scn8a-201ENSMUST00000082209 Zscan21Q07231 555 aa13.22□□□□□ -0.29
Scn8a-201ENSMUST00000082209 Dnai1Q8C0M8 701 aa13.21□□□□□ -0.29
Scn8a-201ENSMUST00000082209 Ipo9Q91YE6 1041 aa13.21□□□□□ -0.29
Scn8a-201ENSMUST00000082209 Pes1Q9EQ61 584 aaKnown RBP13.21□□□□□ -0.3
Scn8a-201ENSMUST00000082209 Rpap1Q80TE0 1409 aa13.2□□□□□ -0.3
Scn8a-201ENSMUST00000082209 Dnai2A2AC93 623 aa13.19□□□□□ -0.3
Scn8a-201ENSMUST00000082209 Cald1E9QA15 768 aaKnown RBP13.19□□□□□ -0.3
Scn8a-201ENSMUST00000082209 Chmp5Q9D7S9 219 aa13.18□□□□□ -0.3
Scn8a-201ENSMUST00000082209 CftrP26361 1476 aa13.18□□□□□ -0.3
Scn8a-201ENSMUST00000082209 Glipr1l2Q9CQ35 332 aa13.18□□□□□ -0.3
Scn8a-201ENSMUST00000082209 Ankrd36D3Z4K0 1415 aa13.17□□□□□ -0.3
Scn8a-201ENSMUST00000082209 Mak16Q8BGS0 296 aaKnown RBP13.17□□□□□ -0.3
Scn8a-201ENSMUST00000082209 Tnnt2P50752 301 aa13.17□□□□□ -0.3
Scn8a-201ENSMUST00000082209 Atp6v1dP57746 247 aa13.16□□□□□ -0.3
Scn8a-201ENSMUST00000082209 R3hcc1Q8BSI6 488 aa13.16□□□□□ -0.3
Scn8a-201ENSMUST00000082209 Rtf1A2AQ19 715 aaKnown RBP13.16□□□□□ -0.3
Scn8a-201ENSMUST00000082209 Vsig10D3YX43 558 aa13.14□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Ccdc88bQ4QRL3 1481 aa13.14□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Spag9Q58A65 1321 aaKnown RBP13.14□□□□□ -0.31
Scn8a-201ENSMUST00000082209 RdxP26043 583 aaKnown RBP13.14□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Rundc1Q0VDN7 615 aa13.14□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Pkd2O35245 966 aa13.13□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Rapgef2Q8CHG7 1496 aa13.13□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Map4P27546 1125 aaKnown RBP13.13□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Ipo8Q7TMY7 1010 aa13.13□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Tpm3-rs7D3Z2H9 248 aa13.12□□□□□ -0.31
Scn8a-201ENSMUST00000082209 MsnP26041 577 aaKnown RBP13.12□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Neurod2Q62414 383 aa13.12□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Aebp1Q640N1 1128 aa13.12□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Hsp90b1P08113 802 aaKnown RBP13.12□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Gtf2e1Q9D0D5 440 aa13.11□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Ncoa2Q61026 1462 aa13.11□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Carmil1Q6EDY6 1374 aa13.1□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Ddrgk1Q80WW9 315 aa13.1□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Rrp12Q6P5B0 1295 aaKnown RBP13.1□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Mphosph9A6H5Y1 991 aa13.09□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Golga2Q921M4 999 aa13.09□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Rab11fip3Q8CHD8 1047 aa13.09□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Smg6P61406 1418 aaKnown RBP13.09□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Cgnl1Q6AW69 1298 aa13.09□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Sh3bp5Q9Z131 463 aa13.09□□□□□ -0.31
Scn8a-201ENSMUST00000082209 Erich6bQ9D4S6 220 aa13.08□□□□□ -0.32
Scn8a-201ENSMUST00000082209 Ciz1Q8VEH2 845 aa13.08□□□□□ -0.32
Scn8a-201ENSMUST00000082209 SetQ9EQU5 289 aaKnown RBP13.08□□□□□ -0.32
Scn8a-201ENSMUST00000082209 ScribQ80U72 1612 aa13.08□□□□□ -0.32
Scn8a-201ENSMUST00000082209 Dnttip2Q8R2M2 758 aaKnown RBP13.06□□□□□ -0.32
Scn8a-201ENSMUST00000082209 Stk24Q99KH8 431 aa13.06□□□□□ -0.32
Scn8a-201ENSMUST00000082209 WrnO09053 1401 aa13.06□□□□□ -0.32
Scn8a-201ENSMUST00000082209 HdgfP51859 237 aaKnown RBP13.06□□□□□ -0.32
Scn8a-201ENSMUST00000082209 Ccnb3Q810T2 1396 aa13.06□□□□□ -0.32
Scn8a-201ENSMUST00000082209 Hspa5P20029 655 aaKnown RBP13.06□□□□□ -0.32
Scn8a-201ENSMUST00000082209 Apbb1Q9QXJ1 710 aa13.05□□□□□ -0.32
Scn8a-201ENSMUST00000082209 Rsph3aQ3UFY4 516 aa13.05□□□□□ -0.32
Scn8a-201ENSMUST00000082209 Atad2bE9Q166 1460 aaKnown RBP13.05□□□□□ -0.32
Scn8a-201ENSMUST00000082209 Cspp1B2RX88 1205 aa13.05□□□□□ -0.32
Scn8a-201ENSMUST00000082209 Iqgap2Q3UQ44 1575 aa13.04□□□□□ -0.32
Scn8a-201ENSMUST00000082209 Ccar1Q8CH18 1146 aaKnown RBP13.04□□□□□ -0.32
Scn8a-201ENSMUST00000082209 Ylpm1Q9R0I7 1386 aaKnown RBP13.04□□□□□ -0.32
Scn8a-201ENSMUST00000082209 Nup155Q99P88 1391 aaKnown RBP13.04□□□□□ -0.32
Scn8a-201ENSMUST00000082209 Supt16hQ920B9 1047 aa13.02□□□□□ -0.32
Scn8a-201ENSMUST00000082209 Speer4f1Q9D5Q6 258 aa13.02□□□□□ -0.32
Scn8a-201ENSMUST00000082209 Phldb1Q6PDH0 1371 aaKnown RBP13.02□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Nol10Q5RJG1 687 aaKnown RBP13.02□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Map7d2A2AG50 781 aa13.01□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Plppr3Q7TPB0 716 aa13.01□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Lemd3Q9WU40 921 aa13.01□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Ifit1bl1D3Z6F0 470 aa13.01□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Top2aQ01320 1528 aaKnown RBP13□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Becn1O88597 448 aa13□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Srcin1Q9QWI6 1250 aa13□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Gprasp1Q5U4C1 1347 aa13□□□□□ -0.33
Scn8a-201ENSMUST00000082209 B4galnt3Q6L8S8 986 aa13□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Ccdc47Q9D024 483 aaKnown RBP13□□□□□ -0.33
Scn8a-201ENSMUST00000082209 AknaQ80VW7 1404 aa12.99□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Cux2P70298 1426 aa12.99□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Mre11Q61216 706 aa12.99□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Pcmtd1P59913 357 aa12.99□□□□□ -0.33
Scn8a-201ENSMUST00000082209 CenpjQ569L8 1344 aa12.99□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Bcl11aQ9QYE3 773 aa12.98□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Iffo2Q8R2V2 512 aa12.98□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Hoxa7P02830 229 aa12.97□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Exoc6Q8R313 802 aa12.97□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Usp47Q8BY87 1376 aa12.96□□□□□ -0.33
Scn8a-201ENSMUST00000082209 MecomP14404 1042 aa12.96□□□□□ -0.33
Scn8a-201ENSMUST00000082209 Trak1Q6PD31 939 aa12.96□□□□□ -0.34
Scn8a-201ENSMUST00000082209 St18Q80TY4 1045 aa12.96□□□□□ -0.34
Scn8a-201ENSMUST00000082209 Rock1P70335 1354 aa12.96□□□□□ -0.34
Scn8a-201ENSMUST00000082209 U2af1Q9D883 239 aaKnown RBP12.95□□□□□ -0.34
Scn8a-201ENSMUST00000082209 Ush1cQ9ES64 910 aa12.95□□□□□ -0.34
Scn8a-201ENSMUST00000082209 Dbr1Q923B1 550 aa12.95□□□□□ -0.34
Scn8a-201ENSMUST00000082209 Vps8Q0P5W1 1427 aa12.95□□□□□ -0.34
Scn8a-201ENSMUST00000082209 A0A1L1SQF0 893 aa12.94□□□□□ -0.34
Scn8a-201ENSMUST00000082209 Anapc15P60007 132 aa12.94□□□□□ -0.34
Scn8a-201ENSMUST00000082209 VgfQ0VGU4 617 aa12.94□□□□□ -0.34
Scn8a-201ENSMUST00000082209 Map3k1P53349 1493 aa12.94□□□□□ -0.34
Scn8a-201ENSMUST00000082209 Irx6Q9ER75 438 aa12.94□□□□□ -0.34
Scn8a-201ENSMUST00000082209 Q3TQI7 289 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 22,080 RNA–protein pairs in 158.8 ms