RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 Znf608Q56A10 1511 aa12.78□□□□□ -0.36
Trim39-201ENSMUST00000042717 Mapkbp1Q6NS57 1503 aa12.78□□□□□ -0.36
Trim39-201ENSMUST00000042717 Plekhh2Q8C115 1491 aa12.78□□□□□ -0.36
Trim39-201ENSMUST00000042717 Kdm6bQ5NCY0 1641 aa12.78□□□□□ -0.36
Trim39-201ENSMUST00000042717 Kdm5bQ80Y84 1544 aa12.78□□□□□ -0.36
Trim39-201ENSMUST00000042717 Abcc5Q9R1X5 1436 aa12.78□□□□□ -0.36
Trim39-201ENSMUST00000042717 NclP09405 707 aaKnown RBP12.77□□□□□ -0.36
Trim39-201ENSMUST00000042717 Zbtb7cQ8VCZ7 619 aa12.77□□□□□ -0.36
Trim39-201ENSMUST00000042717 Atp10dQ8K2X1 1416 aa12.77□□□□□ -0.37
Trim39-201ENSMUST00000042717 Cep170Q6A065 1588 aa12.75□□□□□ -0.37
Trim39-201ENSMUST00000042717 Cdk11bP24788 784 aaKnown RBP12.75□□□□□ -0.37
Trim39-201ENSMUST00000042717 Gm156Q58A37 223 aa12.75□□□□□ -0.37
Trim39-201ENSMUST00000042717 TonslQ6NZL6 1363 aa12.75□□□□□ -0.37
Trim39-201ENSMUST00000042717 Fhad1A6PWD2 1420 aa12.75□□□□□ -0.37
Trim39-201ENSMUST00000042717 Arhgap5P97393 1501 aa12.75□□□□□ -0.37
Trim39-201ENSMUST00000042717 Las1lA2BE28 776 aaKnown RBP12.75□□□□□ -0.37
Trim39-201ENSMUST00000042717 Cul7Q8VE73 1689 aa12.74□□□□□ -0.37
Trim39-201ENSMUST00000042717 UacaQ8CGB3 1411 aa12.73□□□□□ -0.37
Trim39-201ENSMUST00000042717 Igf1rQ60751 1373 aa12.72□□□□□ -0.37
Trim39-201ENSMUST00000042717 Vps8Q0P5W1 1427 aa12.72□□□□□ -0.37
Trim39-201ENSMUST00000042717 Zfp644E9QA22 1323 aa12.72□□□□□ -0.37
Trim39-201ENSMUST00000042717 NhsB1AV60 1647 aa12.72□□□□□ -0.37
Trim39-201ENSMUST00000042717 Mlh3A0A1Y7VMP7 1443 aa12.71□□□□□ -0.37
Trim39-201ENSMUST00000042717 Sart1Q9Z315 806 aaKnown RBP12.7□□□□□ -0.38
Trim39-201ENSMUST00000042717 Wdr7Q920I9 1489 aa12.7□□□□□ -0.38
Trim39-201ENSMUST00000042717 Rrp7aQ9D1C9 280 aaKnown RBP12.7□□□□□ -0.38
Trim39-201ENSMUST00000042717 Ttbk1Q6PCN3 1308 aa12.7□□□□□ -0.38
Trim39-201ENSMUST00000042717 Trappc8E9PWG2 1437 aa12.7□□□□□ -0.38
Trim39-201ENSMUST00000042717 AI481877A2ALV5 1481 aa12.68□□□□□ -0.38
Trim39-201ENSMUST00000042717 Fam208aQ69ZR9 1610 aaKnown RBP12.68□□□□□ -0.38
Trim39-201ENSMUST00000042717 Lrrc9Q8CDN9 1456 aa12.67□□□□□ -0.38
Trim39-201ENSMUST00000042717 Caskin1Q6P9K8 1431 aa12.67□□□□□ -0.38
Trim39-201ENSMUST00000042717 Adgrb2Q8CGM1 1561 aa12.67□□□□□ -0.38
Trim39-201ENSMUST00000042717 Ccer2J3QPU5 274 aa12.67□□□□□ -0.38
Trim39-201ENSMUST00000042717 Wdr66E9Q743 1299 aa12.65□□□□□ -0.38
Trim39-201ENSMUST00000042717 Hspa5P20029 655 aaKnown RBP12.65□□□□□ -0.38
Trim39-201ENSMUST00000042717 SphkapQ6NSW3 1687 aa12.64□□□□□ -0.39
Trim39-201ENSMUST00000042717 Adgrl3Q80TS3 1537 aa12.64□□□□□ -0.39
Trim39-201ENSMUST00000042717 Ppp1r18Q8BQ30 594 aa12.64□□□□□ -0.39
Trim39-201ENSMUST00000042717 Dennd4bQ3U1Y4 1499 aa12.64□□□□□ -0.39
Trim39-201ENSMUST00000042717 Il16O54824 1322 aa12.64□□□□□ -0.39
Trim39-201ENSMUST00000042717 Mphosph9A6H5Y1 991 aa12.63□□□□□ -0.39
Trim39-201ENSMUST00000042717 Abca8bQ8K440 1620 aa12.63□□□□□ -0.39
Trim39-201ENSMUST00000042717 Hnrnpul2Q00PI9 745 aaKnown RBP12.62□□□□□ -0.39
Trim39-201ENSMUST00000042717 Rfx7F8VPJ6 1459 aa12.62□□□□□ -0.39
Trim39-201ENSMUST00000042717 Kdm3bQ6ZPY7 1562 aa12.61□□□□□ -0.39
Trim39-201ENSMUST00000042717 Ppargc1bQ8VHJ7 1014 aa12.6□□□□□ -0.39
Trim39-201ENSMUST00000042717 Kiaa1210E9Q0C6 1637 aa12.6□□□□□ -0.39
Trim39-201ENSMUST00000042717 Rnf17Q99MV7 1640 aa12.6□□□□□ -0.39
Trim39-201ENSMUST00000042717 Map3k5O35099 1380 aa12.6□□□□□ -0.39
Trim39-201ENSMUST00000042717 Neurod1Q60867 357 aa12.58□□□□□ -0.4
Trim39-201ENSMUST00000042717 Lemd3Q9WU40 921 aa12.58□□□□□ -0.4
Trim39-201ENSMUST00000042717 Aebp2Q9Z248 504 aaKnown RBP12.58□□□□□ -0.4
Trim39-201ENSMUST00000042717 Ak9G3UYQ4 1894 aa12.58□□□□□ -0.4
Trim39-201ENSMUST00000042717 Gm32742A0A1B0GT42 1604 aa12.57□□□□□ -0.4
Trim39-201ENSMUST00000042717 Supt5hO55201 1082 aaKnown RBP12.57□□□□□ -0.4
Trim39-201ENSMUST00000042717 Map4P27546 1125 aaKnown RBP12.57□□□□□ -0.4
Trim39-201ENSMUST00000042717 Col17a1Q07563 1470 aa12.57□□□□□ -0.4
Trim39-201ENSMUST00000042717 Nup155Q99P88 1391 aaKnown RBP12.56□□□□□ -0.4
Trim39-201ENSMUST00000042717 Pkd2O35245 966 aa12.56□□□□□ -0.4
Trim39-201ENSMUST00000042717 Trak1Q6PD31 939 aa12.56□□□□□ -0.4
Trim39-201ENSMUST00000042717 Zfyve16Q80U44 1528 aa12.55□□□□□ -0.4
Trim39-201ENSMUST00000042717 Ttll5Q8CHB8 1328 aa12.55□□□□□ -0.4
Trim39-201ENSMUST00000042717 Cfap74Q3UY96 1578 aa12.54□□□□□ -0.4
Trim39-201ENSMUST00000042717 Ankrd36D3Z4K0 1415 aa12.54□□□□□ -0.4
Trim39-201ENSMUST00000042717 AlkP97793 1621 aa12.54□□□□□ -0.4
Trim39-201ENSMUST00000042717 Fmn2Q9JL04 1578 aa12.52□□□□□ -0.41
Trim39-201ENSMUST00000042717 Ssh2Q5SW75 1423 aa12.52□□□□□ -0.41
Trim39-201ENSMUST00000042717 Spag9Q58A65 1321 aaKnown RBP12.52□□□□□ -0.41
Trim39-201ENSMUST00000042717 Depdc5P61460 1591 aa12.51□□□□□ -0.41
Trim39-201ENSMUST00000042717 Setbp1Q9Z180 1582 aa12.51□□□□□ -0.41
Trim39-201ENSMUST00000042717 Abcc3B2RX12 1523 aa12.5□□□□□ -0.41
Trim39-201ENSMUST00000042717 Kidins220E9Q9B7 1793 aa12.5□□□□□ -0.41
Trim39-201ENSMUST00000042717 Cdc42bpbQ7TT50 1713 aa12.49□□□□□ -0.41
Trim39-201ENSMUST00000042717 Abca9Q8K449 1623 aa12.49□□□□□ -0.41
Trim39-201ENSMUST00000042717 Kif3bQ61771 747 aa12.49□□□□□ -0.41
Trim39-201ENSMUST00000042717 Plppr3Q7TPB0 716 aa12.49□□□□□ -0.41
Trim39-201ENSMUST00000042717 Dhx9O70133 1380 aaKnown RBP12.49□□□□□ -0.41
Trim39-201ENSMUST00000042717 Prdm16A2A935 1275 aa12.48□□□□□ -0.41
Trim39-201ENSMUST00000042717 Clstn2Q9ER65 966 aa12.48□□□□□ -0.41
Trim39-201ENSMUST00000042717 Pprc1Q6NZN1 1644 aa12.48□□□□□ -0.41
Trim39-201ENSMUST00000042717 Pcgf6Q99NA9 353 aa12.48□□□□□ -0.41
Trim39-201ENSMUST00000042717 Pdcd11Q6NS46 1862 aaKnown RBP12.47□□□□□ -0.41
Trim39-201ENSMUST00000042717 Adgrl2Q8JZZ7 1487 aa12.47□□□□□ -0.41
Trim39-201ENSMUST00000042717 Erich6D3Z6S9 713 aa12.47□□□□□ -0.41
Trim39-201ENSMUST00000042717 Sall2Q9QX96 1004 aa12.47□□□□□ -0.41
Trim39-201ENSMUST00000042717 Rgl3Q3UYI5 709 aa12.46□□□□□ -0.41
Trim39-201ENSMUST00000042717 Usp47Q8BY87 1376 aa12.46□□□□□ -0.41
Trim39-201ENSMUST00000042717 OvosQ3UU35 1456 aa12.45□□□□□ -0.42
Trim39-201ENSMUST00000042717 Supt6hQ62383 1726 aaKnown RBP12.45□□□□□ -0.42
Trim39-201ENSMUST00000042717 Pde4cQ3UEI1 686 aa12.44□□□□□ -0.42
Trim39-201ENSMUST00000042717 Fhod3Q76LL6 1578 aa12.44□□□□□ -0.42
Trim39-201ENSMUST00000042717 Ptch1Q61115 1434 aa12.43□□□□□ -0.42
Trim39-201ENSMUST00000042717 Hecw1Q8K4P8 1604 aa12.43□□□□□ -0.42
Trim39-201ENSMUST00000042717 Mast1Q9R1L5 1570 aa12.43□□□□□ -0.42
Trim39-201ENSMUST00000042717 Cd109Q8R422 1442 aa12.4□□□□□ -0.42
Trim39-201ENSMUST00000042717 Clasp1Q80TV8 1535 aaKnown RBP12.4□□□□□ -0.42
Trim39-201ENSMUST00000042717 Mapk8ip2Q9ERE9 830 aa12.39□□□□□ -0.43
Trim39-201ENSMUST00000042717 Trpm2Q91YD4 1506 aa12.39□□□□□ -0.43
Trim39-201ENSMUST00000042717 Asxl1P59598 1514 aa12.38□□□□□ -0.43
Retrieved 100 of 22,080 RNA–protein pairs in 81.1 ms