RNA–Protein interactions for RNA: ENSMUST00000041639.6

Syne1-201, Transcript of Nesprin-1, mousemouse

TSL 1 (best) BASIC

Gene Syne1, Length 6,990 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Syne1-201ENSMUST00000041639 Zscan21Q07231 555 aa12.5□□□□□ -0.41
Syne1-201ENSMUST00000041639 MccE9PWI3 1003 aa12.49□□□□□ -0.41
Syne1-201ENSMUST00000041639 Fhad1A6PWD2 1420 aa12.49□□□□□ -0.41
Syne1-201ENSMUST00000041639 Tmco5bQ80X59 307 aa12.49□□□□□ -0.41
Syne1-201ENSMUST00000041639 Sh3bp5Q9Z131 463 aa12.49□□□□□ -0.41
Syne1-201ENSMUST00000041639 MyclP10166 368 aa12.48□□□□□ -0.41
Syne1-201ENSMUST00000041639 Pcmtd1P59913 357 aa12.48□□□□□ -0.41
Syne1-201ENSMUST00000041639 Trak1Q6PD31 939 aa12.48□□□□□ -0.41
Syne1-201ENSMUST00000041639 Ccdc88bQ4QRL3 1481 aa12.48□□□□□ -0.41
Syne1-201ENSMUST00000041639 Cluap1Q8R3P7 413 aa12.48□□□□□ -0.41
Syne1-201ENSMUST00000041639 Adam1bQ8R534 806 aa12.48□□□□□ -0.41
Syne1-201ENSMUST00000041639 Kif27Q7M6Z4 1394 aa12.48□□□□□ -0.41
Syne1-201ENSMUST00000041639 Stk26Q99JT2 416 aa12.47□□□□□ -0.41
Syne1-201ENSMUST00000041639 Mak16Q8BGS0 296 aaKnown RBP12.47□□□□□ -0.41
Syne1-201ENSMUST00000041639 Tmf1B9EKI3 1091 aa12.46□□□□□ -0.41
Syne1-201ENSMUST00000041639 HnrnpuQ8VEK3 800 aaKnown RBP12.46□□□□□ -0.41
Syne1-201ENSMUST00000041639 Ipo9Q91YE6 1041 aa12.46□□□□□ -0.41
Syne1-201ENSMUST00000041639 U2af1Q9D883 239 aaKnown RBP12.46□□□□□ -0.41
Syne1-201ENSMUST00000041639 Mphosph9A6H5Y1 991 aa12.46□□□□□ -0.42
Syne1-201ENSMUST00000041639 Gtf2e1Q9D0D5 440 aa12.46□□□□□ -0.42
Syne1-201ENSMUST00000041639 Zfp777B9EKF4 885 aa12.45□□□□□ -0.42
Syne1-201ENSMUST00000041639 Znf330Q922H9 316 aa12.45□□□□□ -0.42
Syne1-201ENSMUST00000041639 Cabp1Q9JLK7 227 aa12.45□□□□□ -0.42
Syne1-201ENSMUST00000041639 Cep162Q6ZQ06 1403 aa12.45□□□□□ -0.42
Syne1-201ENSMUST00000041639 Aebp1Q640N1 1128 aa12.45□□□□□ -0.42
Syne1-201ENSMUST00000041639 Rassf8Q8CJ96 419 aa12.44□□□□□ -0.42
Syne1-201ENSMUST00000041639 Rtf1A2AQ19 715 aaKnown RBP12.44□□□□□ -0.42
Syne1-201ENSMUST00000041639 Znf316Q6PGE4 1016 aa12.44□□□□□ -0.42
Syne1-201ENSMUST00000041639 Dcaf11Q91VU6 549 aa12.43□□□□□ -0.42
Syne1-201ENSMUST00000041639 Golga2Q921M4 999 aa12.43□□□□□ -0.42
Syne1-201ENSMUST00000041639 Senp3Q9EP97 568 aaKnown RBP12.43□□□□□ -0.42
Syne1-201ENSMUST00000041639 Mfap1aC0HKD8 439 aaKnown RBP12.42□□□□□ -0.42
Syne1-201ENSMUST00000041639 Mfap1bC0HKD9 439 aaKnown RBP12.42□□□□□ -0.42
Syne1-201ENSMUST00000041639 Ipo8Q7TMY7 1010 aa12.42□□□□□ -0.42
Syne1-201ENSMUST00000041639 CrbnQ8C7D2 445 aa12.41□□□□□ -0.42
Syne1-201ENSMUST00000041639 Birc3O08863 600 aa12.4□□□□□ -0.42
Syne1-201ENSMUST00000041639 Anapc15P60007 132 aa12.4□□□□□ -0.42
Syne1-201ENSMUST00000041639 GorabQ8BRM2 368 aa12.4□□□□□ -0.42
Syne1-201ENSMUST00000041639 Sart3Q9JLI8 962 aaKnown RBP12.39□□□□□ -0.43
Syne1-201ENSMUST00000041639 Tnnt2P50752 301 aa12.39□□□□□ -0.43
Syne1-201ENSMUST00000041639 ChgaP26339 463 aaKnown RBP12.38□□□□□ -0.43
Syne1-201ENSMUST00000041639 Fyco1Q8VDC1 1437 aa12.38□□□□□ -0.43
Syne1-201ENSMUST00000041639 Arid3cA6PWV5 409 aa12.38□□□□□ -0.43
Syne1-201ENSMUST00000041639 Tnnt1O88346 262 aa12.38□□□□□ -0.43
Syne1-201ENSMUST00000041639 CgnP59242 1191 aa12.38□□□□□ -0.43
Syne1-201ENSMUST00000041639 PtmsQ9D0J8 101 aaKnown RBP12.37□□□□□ -0.43
Syne1-201ENSMUST00000041639 Nolc1E9Q5C9 702 aaKnown RBP12.37□□□□□ -0.43
Syne1-201ENSMUST00000041639 Q3TQI7 289 aaKnown RBP12.37□□□□□ -0.43
Syne1-201ENSMUST00000041639 Kdm5dQ62240 1548 aa12.36□□□□□ -0.43
Syne1-201ENSMUST00000041639 Ksr2Q3UVC0 959 aa12.36□□□□□ -0.43
Syne1-201ENSMUST00000041639 Iffo2Q8R2V2 512 aa12.36□□□□□ -0.43
Syne1-201ENSMUST00000041639 Baz1bQ9Z277 1479 aa12.36□□□□□ -0.43
Syne1-201ENSMUST00000041639 Gm973E9Q295 1059 aa12.36□□□□□ -0.43
Syne1-201ENSMUST00000041639 MsnP26041 577 aaKnown RBP12.36□□□□□ -0.43
Syne1-201ENSMUST00000041639 Arhgap35Q91YM2 1499 aa12.35□□□□□ -0.43
Syne1-201ENSMUST00000041639 Rpap1Q80TE0 1409 aa12.35□□□□□ -0.43
Syne1-201ENSMUST00000041639 Rock2P70336 1388 aa12.34□□□□□ -0.43
Syne1-201ENSMUST00000041639 Srcin1Q9QWI6 1250 aa12.34□□□□□ -0.43
Syne1-201ENSMUST00000041639 MecomP14404 1042 aa12.34□□□□□ -0.43
Syne1-201ENSMUST00000041639 Fmn1Q05860 1466 aa12.33□□□□□ -0.43
Syne1-201ENSMUST00000041639 Pibf1E9Q6K3 756 aa12.32□□□□□ -0.44
Syne1-201ENSMUST00000041639 Slc4a1apE9PX68 744 aa12.32□□□□□ -0.44
Syne1-201ENSMUST00000041639 SlkO54988 1233 aa12.32□□□□□ -0.44
Syne1-201ENSMUST00000041639 AknaQ80VW7 1404 aa12.31□□□□□ -0.44
Syne1-201ENSMUST00000041639 Ppp1r18Q8BQ30 594 aa12.31□□□□□ -0.44
Syne1-201ENSMUST00000041639 CrebrfQ8CDG5 640 aaKnown RBP12.31□□□□□ -0.44
Syne1-201ENSMUST00000041639 Sox12Q04890 314 aa12.3□□□□□ -0.44
Syne1-201ENSMUST00000041639 CntlnA2AM05 1397 aa12.3□□□□□ -0.44
Syne1-201ENSMUST00000041639 Pde3bQ61409 1100 aa12.3□□□□□ -0.44
Syne1-201ENSMUST00000041639 Taok2Q6ZQ29 1240 aa12.29□□□□□ -0.44
Syne1-201ENSMUST00000041639 Ccar1Q8CH18 1146 aaKnown RBP12.29□□□□□ -0.44
Syne1-201ENSMUST00000041639 Lemd3Q9WU40 921 aa12.28□□□□□ -0.44
Syne1-201ENSMUST00000041639 Nup155Q99P88 1391 aaKnown RBP12.28□□□□□ -0.44
Syne1-201ENSMUST00000041639 Brpf1B2RRD7 1212 aa12.28□□□□□ -0.44
Syne1-201ENSMUST00000041639 Calcoco2A2A6M5 331 aa12.28□□□□□ -0.44
Syne1-201ENSMUST00000041639 Gpatch11Q3UFS4 262 aa12.28□□□□□ -0.44
Syne1-201ENSMUST00000041639 Rrp12Q6P5B0 1295 aaKnown RBP12.27□□□□□ -0.44
Syne1-201ENSMUST00000041639 Psme1P97371 249 aa12.27□□□□□ -0.45
Syne1-201ENSMUST00000041639 Spag9Q58A65 1321 aaKnown RBP12.27□□□□□ -0.45
Syne1-201ENSMUST00000041639 Nol10Q5RJG1 687 aaKnown RBP12.27□□□□□ -0.45
Syne1-201ENSMUST00000041639 Kif3bQ61771 747 aa12.26□□□□□ -0.45
Syne1-201ENSMUST00000041639 Smg6P61406 1418 aaKnown RBP12.25□□□□□ -0.45
Syne1-201ENSMUST00000041639 Fan1Q69ZT1 1020 aa12.25□□□□□ -0.45
Syne1-201ENSMUST00000041639 Ccdc146E9Q9F7 977 aa12.25□□□□□ -0.45
Syne1-201ENSMUST00000041639 Eif4g2Q62448 906 aaKnown RBP12.25□□□□□ -0.45
Syne1-201ENSMUST00000041639 Kiaa0754Q69ZZ9 979 aa12.25□□□□□ -0.45
Syne1-201ENSMUST00000041639 Pank3Q8R2W9 370 aa12.25□□□□□ -0.45
Syne1-201ENSMUST00000041639 R3hcc1Q8BSI6 488 aa12.25□□□□□ -0.45
Syne1-201ENSMUST00000041639 Txndc2Q6P902 515 aa12.24□□□□□ -0.45
Syne1-201ENSMUST00000041639 RdxP26043 583 aaKnown RBP12.24□□□□□ -0.45
Syne1-201ENSMUST00000041639 Smarce1O54941 411 aaKnown RBP12.23□□□□□ -0.45
Syne1-201ENSMUST00000041639 Mical1Q8VDP3 1048 aa12.23□□□□□ -0.45
Syne1-201ENSMUST00000041639 Tsen2Q6P7W5 460 aa12.22□□□□□ -0.45
Syne1-201ENSMUST00000041639 Q8BT18 775 aa12.22□□□□□ -0.45
Syne1-201ENSMUST00000041639 Tpm3-rs7D3Z2H9 248 aa12.22□□□□□ -0.45
Syne1-201ENSMUST00000041639 Chmp3Q9CQ10 224 aa12.22□□□□□ -0.45
Syne1-201ENSMUST00000041639 Plekhh2Q8C115 1491 aa12.21□□□□□ -0.45
Syne1-201ENSMUST00000041639 Cald1E9QA15 768 aaKnown RBP12.21□□□□□ -0.46
Syne1-201ENSMUST00000041639 Usp47Q8BY87 1376 aa12.2□□□□□ -0.46
Syne1-201ENSMUST00000041639 Gtf3c3Q3TMP1 882 aa12.2□□□□□ -0.46
Retrieved 100 of 22,080 RNA–protein pairs in 21.7 ms