RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 SUPT20HL2P0C7V6 817 aa15.97■□□□□ 0.15
TRIM28-211ENST00000597968 EDNRBP24530 442 aa15.97■□□□□ 0.15
TRIM28-211ENST00000597968 SLC16A2P36021 539 aa15.97■□□□□ 0.15
TRIM28-211ENST00000597968 TMEM240Q5SV17 173 aa15.97■□□□□ 0.15
TRIM28-211ENST00000597968 TTBK2Q6IQ55 1244 aa15.97■□□□□ 0.15
TRIM28-211ENST00000597968 CXCL17Q6UXB2 119 aa15.97■□□□□ 0.15
TRIM28-211ENST00000597968 CLEC4DQ8WXI8 215 aa15.97■□□□□ 0.15
TRIM28-211ENST00000597968 FAM161BQ96MY7 647 aa15.97■□□□□ 0.15
TRIM28-211ENST00000597968 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.97■□□□□ 0.155e-9■□□□□ 10.1
TRIM28-211ENST00000597968 TTYH1Q9H313 450 aaPredicted RBP15.97■□□□□ 0.15
TRIM28-211ENST00000597968 IL23AQ9NPF7 189 aa15.97■□□□□ 0.15
TRIM28-211ENST00000597968 NFIBO00712 420 aa15.96■□□□□ 0.15
TRIM28-211ENST00000597968 DNAJB2P25686 324 aa15.96■□□□□ 0.15
TRIM28-211ENST00000597968 HAND2P61296 217 aa15.96■□□□□ 0.15
TRIM28-211ENST00000597968 BEX3Q00994 111 aa15.96■□□□□ 0.15
TRIM28-211ENST00000597968 FBXO16Q8IX29 292 aaPredicted RBP15.96■□□□□ 0.15
TRIM28-211ENST00000597968 SCFD2Q8WU76 684 aa15.96■□□□□ 0.15
TRIM28-211ENST00000597968 WDR11Q9BZH6 1224 aa15.96■□□□□ 0.15
TRIM28-211ENST00000597968 HIPK3Q9H422 1215 aa15.96■□□□□ 0.15
TRIM28-211ENST00000597968 CNNM2Q9H8M5 875 aa15.96■□□□□ 0.15
TRIM28-211ENST00000597968 GPCPD1Q9NPB8 672 aa15.96■□□□□ 0.15
TRIM28-211ENST00000597968 PDGFCQ9NRA1 345 aa15.96■□□□□ 0.15
TRIM28-211ENST00000597968 DIAPH3Q9NSV4 1193 aa15.96■□□□□ 0.15
TRIM28-211ENST00000597968 MTMR7Q9Y216 660 aa15.96■□□□□ 0.15
TRIM28-211ENST00000597968 LRRC37A2A6NM11 1700 aa15.96■□□□□ 0.15
TRIM28-211ENST00000597968 MCM3APO60318 1980 aa15.95■□□□□ 0.14
TRIM28-211ENST00000597968 PFKMP08237 780 aa15.95■□□□□ 0.14
TRIM28-211ENST00000597968 CSF2RAP15509 400 aa15.95■□□□□ 0.14
TRIM28-211ENST00000597968 SNAP25P60880 206 aa15.95■□□□□ 0.14
TRIM28-211ENST00000597968 RPS6P62753 249 aaKnown RBP15.95■□□□□ 0.14
TRIM28-211ENST00000597968 IRX5P78411 483 aaPredicted RBP15.95■□□□□ 0.14
TRIM28-211ENST00000597968 PDE4DQ08499 809 aa15.95■□□□□ 0.14
TRIM28-211ENST00000597968 IMMTQ16891 758 aaKnown RBP15.95■□□□□ 0.14
TRIM28-211ENST00000597968 ASPRV1Q53RT3 343 aa15.95■□□□□ 0.14
TRIM28-211ENST00000597968 B4GALNT3Q6L9W6 998 aa15.95■□□□□ 0.14
TRIM28-211ENST00000597968 C16orf59Q7L2K0 433 aa15.95■□□□□ 0.14
TRIM28-211ENST00000597968 RASGRP2Q7LDG7 609 aa15.95■□□□□ 0.14
TRIM28-211ENST00000597968 TBC1D10CQ8IV04 446 aa15.95■□□□□ 0.14
TRIM28-211ENST00000597968 RPUSD2Q8IZ73 545 aaKnown RBP15.95■□□□□ 0.14
TRIM28-211ENST00000597968 MAFAQ8NHW3 353 aaPredicted RBP15.95■□□□□ 0.14
TRIM28-211ENST00000597968 EXOC6Q8TAG9 804 aa15.95■□□□□ 0.14
TRIM28-211ENST00000597968 HERVK_113Q902F9 699 aa15.95■□□□□ 0.14
TRIM28-211ENST00000597968 KRT23Q9C075 422 aa15.95■□□□□ 0.14
TRIM28-211ENST00000597968 FRMPD2Q68DX3 1309 aaPredicted RBP15.94■□□□□ 0.14
TRIM28-211ENST00000597968 IGHDP01880 384 aa15.94■□□□□ 0.14
TRIM28-211ENST00000597968 FOSL2P15408 326 aa15.94■□□□□ 0.14
TRIM28-211ENST00000597968 PTPN11Q06124 597 aaPredicted RBP15.94■□□□□ 0.14
TRIM28-211ENST00000597968 PPP2R5BQ15173 497 aa15.94■□□□□ 0.14
TRIM28-211ENST00000597968 RAB30Q15771 203 aa15.94■□□□□ 0.14
TRIM28-211ENST00000597968 CWC27Q6UX04 472 aaKnown RBP15.94■□□□□ 0.14
TRIM28-211ENST00000597968 EEPD1Q7L9B9 569 aa15.94■□□□□ 0.14
TRIM28-211ENST00000597968 MCF2L2Q86YR7 1114 aa15.94■□□□□ 0.14
TRIM28-211ENST00000597968 PNMA1Q8ND90 353 aa15.94■□□□□ 0.14
TRIM28-211ENST00000597968 TIFAQ96CG3 184 aa15.94■□□□□ 0.14
TRIM28-211ENST00000597968 KAT14Q9H8E8 782 aa15.94■□□□□ 0.14
TRIM28-211ENST00000597968 GPHNQ9NQX3 736 aaPredicted RBP15.94■□□□□ 0.14
TRIM28-211ENST00000597968 GRIN2DO15399 1336 aa15.94■□□□□ 0.14
TRIM28-211ENST00000597968 ABCB11O95342 1321 aa15.94■□□□□ 0.14
TRIM28-211ENST00000597968 NEDD4P46934 1319 aa15.94■□□□□ 0.14
TRIM28-211ENST00000597968 A6NJR5 290 aa15.93■□□□□ 0.14
TRIM28-211ENST00000597968 FGBP02675 491 aa15.93■□□□□ 0.14
TRIM28-211ENST00000597968 CALML3P27482 149 aa15.93■□□□□ 0.14
TRIM28-211ENST00000597968 PURAQ00577 322 aaKnown RBP15.93■□□□□ 0.14
TRIM28-211ENST00000597968 SAMD3Q8N6K7 520 aa15.93■□□□□ 0.14
TRIM28-211ENST00000597968 CHMP4CQ96CF2 233 aa15.93■□□□□ 0.14
TRIM28-211ENST00000597968 IWS1Q96ST2 819 aa15.93■□□□□ 0.14
TRIM28-211ENST00000597968 ZSCAN10Q96SZ4 725 aaPredicted RBP15.93■□□□□ 0.14
TRIM28-211ENST00000597968 MTG1Q9BT17 334 aaPredicted RBP15.93■□□□□ 0.14
TRIM28-211ENST00000597968 NOC4LQ9BVI4 516 aaKnown RBP15.93■□□□□ 0.14
TRIM28-211ENST00000597968 PPP1R12CQ9BZL4 782 aa15.93■□□□□ 0.14
TRIM28-211ENST00000597968 ALDH8A1Q9H2A2 487 aaPredicted RBP15.93■□□□□ 0.14
TRIM28-211ENST00000597968 ZNF576Q9H609 170 aa15.93■□□□□ 0.14
TRIM28-211ENST00000597968 MAP3K20Q9NYL2 800 aaKnown RBP15.93■□□□□ 0.14
TRIM28-211ENST00000597968 VCANP13611 3396 aa15.92■□□□□ 0.14
TRIM28-211ENST00000597968 B4GALT4O60513 344 aa15.92■□□□□ 0.14
TRIM28-211ENST00000597968 KDM4AO75164 1064 aa15.92■□□□□ 0.14
TRIM28-211ENST00000597968 TRAF1Q13077 416 aa15.92■□□□□ 0.14
TRIM28-211ENST00000597968 TTLL4Q14679 1199 aa15.92■□□□□ 0.14
TRIM28-211ENST00000597968 NFRKBQ6P4R8 1299 aa15.92■□□□□ 0.14
TRIM28-211ENST00000597968 SLC30A10Q6XR72 485 aa15.92■□□□□ 0.14
TRIM28-211ENST00000597968 ZNF365Q70YC5 407 aa15.92■□□□□ 0.14
TRIM28-211ENST00000597968 MYLIPQ8WY64 445 aa15.92■□□□□ 0.14
TRIM28-211ENST00000597968 CYP2C18P33260 490 aa15.91■□□□□ 0.14
TRIM28-211ENST00000597968 RFC2P35250 354 aa15.91■□□□□ 0.14
TRIM28-211ENST00000597968 OR6J1Q8NGC5 347 aa15.91■□□□□ 0.14
TRIM28-211ENST00000597968 NSUN6Q8TEA1 469 aaKnown RBP15.91■□□□□ 0.14
TRIM28-211ENST00000597968 PURBQ96QR8 312 aaKnown RBP15.91■□□□□ 0.14
TRIM28-211ENST00000597968 PBX4Q9BYU1 374 aa15.91■□□□□ 0.14
TRIM28-211ENST00000597968 ZSWIM5Q9P217 1185 aa15.91■□□□□ 0.14
TRIM28-211ENST00000597968 MSRAQ9UJ68 235 aa15.91■□□□□ 0.14
TRIM28-211ENST00000597968 MRPL11Q9Y3B7 192 aaKnown RBP15.91■□□□□ 0.14
TRIM28-211ENST00000597968 PRUNE2Q8WUY3 3088 aa15.91■□□□□ 0.14
TRIM28-211ENST00000597968 LCTP09848 1927 aa15.9■□□□□ 0.14
TRIM28-211ENST00000597968 PITPNM1O00562 1244 aa15.9■□□□□ 0.14
TRIM28-211ENST00000597968 PARP1P09874 1014 aaKnown RBP15.9■□□□□ 0.14
TRIM28-211ENST00000597968 GHRHRQ02643 423 aa15.9■□□□□ 0.14
TRIM28-211ENST00000597968 CDC37Q16543 378 aaPredicted RBP15.9■□□□□ 0.14
TRIM28-211ENST00000597968 ENAHQ8N8S7 591 aaPredicted RBP15.9■□□□□ 0.14
TRIM28-211ENST00000597968 SYMPKQ92797 1274 aaKnown RBP15.9■□□□□ 0.14
TRIM28-211ENST00000597968 UBAC1Q9BSL1 405 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms