RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 BRWD1Q9NSI6 2320 aa12.06□□□□□ -0.48
TRIM28-210ENST00000597618 PRR33A8MZF0 331 aa12.05□□□□□ -0.48
TRIM28-210ENST00000597618 PLA2G6O60733 806 aa12.05□□□□□ -0.48
TRIM28-210ENST00000597618 ARHGEF15O94989 841 aa12.05□□□□□ -0.48
TRIM28-210ENST00000597618 MYL3P08590 195 aa12.05□□□□□ -0.48
TRIM28-210ENST00000597618 TSPY3P0CV98 308 aa12.05□□□□□ -0.48
TRIM28-210ENST00000597618 TSPY8P0CW00 308 aa12.05□□□□□ -0.48
TRIM28-210ENST00000597618 SLC1A4P43007 532 aa12.05□□□□□ -0.48
TRIM28-210ENST00000597618 KCNJ6P48051 423 aa12.05□□□□□ -0.48
TRIM28-210ENST00000597618 TDO2P48775 406 aa12.05□□□□□ -0.48
TRIM28-210ENST00000597618 BFSP2Q13515 415 aa12.05□□□□□ -0.48
TRIM28-210ENST00000597618 BRDTQ58F21 947 aaPredicted RBP12.05□□□□□ -0.48
TRIM28-210ENST00000597618 FAM47CQ5HY64 1035 aa12.05□□□□□ -0.48
TRIM28-210ENST00000597618 NFRKBQ6P4R8 1299 aa12.05□□□□□ -0.48
TRIM28-210ENST00000597618 MORC4Q8TE76 937 aa12.05□□□□□ -0.48
TRIM28-210ENST00000597618 RAD50Q92878 1312 aa12.05□□□□□ -0.48
TRIM28-210ENST00000597618 LOC102724159A0A0B4J2E5 919 aa12.04□□□□□ -0.48
TRIM28-210ENST00000597618 CCER2I3L3R5 266 aa12.04□□□□□ -0.48
TRIM28-210ENST00000597618 LPXNO60711 386 aa12.04□□□□□ -0.48
TRIM28-210ENST00000597618 IQCF3P0C7M6 154 aa12.04□□□□□ -0.48
TRIM28-210ENST00000597618 GNAT2P19087 354 aa12.04□□□□□ -0.48
TRIM28-210ENST00000597618 PTPN11Q06124 597 aaPredicted RBP12.04□□□□□ -0.48
TRIM28-210ENST00000597618 PWP2Q15269 919 aaKnown RBP12.04□□□□□ -0.48
TRIM28-210ENST00000597618 PPP4R3BQ5MIZ7 849 aa12.04□□□□□ -0.48
TRIM28-210ENST00000597618 TMEM63BQ5T3F8 832 aa12.04□□□□□ -0.48
TRIM28-210ENST00000597618 NSMFQ6X4W1 530 aa12.04□□□□□ -0.48
TRIM28-210ENST00000597618 ALYREFQ86V81 257 aaKnown RBP12.04□□□□□ -0.48
TRIM28-210ENST00000597618 NEDD1Q8NHV4 660 aa12.04□□□□□ -0.48
TRIM28-210ENST00000597618 WDR11Q9BZH6 1224 aa12.04□□□□□ -0.48
TRIM28-210ENST00000597618 EPB41L4AQ9HCS5 686 aaPredicted RBP12.04□□□□□ -0.48
TRIM28-210ENST00000597618 ADD3Q9UEY8 706 aaKnown RBP12.04□□□□□ -0.48
TRIM28-210ENST00000597618 MYH7P12883 1935 aa12.03□□□□□ -0.48
TRIM28-210ENST00000597618 MYH4Q9Y623 1939 aa12.03□□□□□ -0.48
TRIM28-210ENST00000597618 KPNA6O60684 536 aa12.03□□□□□ -0.48
TRIM28-210ENST00000597618 PDE4BQ07343 736 aa12.03□□□□□ -0.48
TRIM28-210ENST00000597618 LRRFIP1Q32MZ4 808 aaKnown RBP12.03□□□□□ -0.48
TRIM28-210ENST00000597618 NBPF20Q3BBV1 942 aa12.03□□□□□ -0.48
TRIM28-210ENST00000597618 MUM1L1Q5H9M0 696 aa12.03□□□□□ -0.48
TRIM28-210ENST00000597618 CCDC155Q8N6L0 562 aa12.03□□□□□ -0.48
TRIM28-210ENST00000597618 OR6J1Q8NGC5 347 aa12.03□□□□□ -0.48
TRIM28-210ENST00000597618 PANK1Q8TE04 598 aa12.03□□□□□ -0.48
TRIM28-210ENST00000597618 GDPD5Q8WTR4 605 aa12.03□□□□□ -0.48
TRIM28-210ENST00000597618 APPBP2Q92624 585 aa12.03□□□□□ -0.48
TRIM28-210ENST00000597618 UBE2ZQ9H832 354 aaPredicted RBP12.03□□□□□ -0.48
TRIM28-210ENST00000597618 CD320Q9NPF0 282 aa12.03□□□□□ -0.48
TRIM28-210ENST00000597618 CCPG1Q9ULG6 757 aa12.03□□□□□ -0.48
TRIM28-210ENST00000597618 NOD1Q9Y239 953 aa12.03□□□□□ -0.48
TRIM28-210ENST00000597618 WDFY4Q6ZS81 3184 aa12.02□□□□□ -0.48
TRIM28-210ENST00000597618 TANC1Q9C0D5 1861 aa12.02□□□□□ -0.48
TRIM28-210ENST00000597618 RBM47A0AV96 593 aaKnown RBP12.02□□□□□ -0.49
TRIM28-210ENST00000597618 NKRFO15226 690 aaKnown RBP eCLIP12.02□□□□□ -0.49
TRIM28-210ENST00000597618 GPAA1O43292 621 aa12.02□□□□□ -0.49
TRIM28-210ENST00000597618 APPP05067 770 aa12.02□□□□□ -0.49
TRIM28-210ENST00000597618 ICAM1P05362 532 aa12.02□□□□□ -0.49
TRIM28-210ENST00000597618 SLC3A2P08195 630 aaKnown RBP12.02□□□□□ -0.49
TRIM28-210ENST00000597618 MCCP23508 829 aa12.02□□□□□ -0.49
TRIM28-210ENST00000597618 ALDH5A1P51649 535 aaPredicted RBP12.02□□□□□ -0.49
TRIM28-210ENST00000597618 PPP2R5BQ15173 497 aa12.02□□□□□ -0.49
TRIM28-210ENST00000597618 SIRT2Q8IXJ6 389 aa12.02□□□□□ -0.49
TRIM28-210ENST00000597618 GJD3Q8N144 294 aa12.02□□□□□ -0.49
TRIM28-210ENST00000597618 OSBP2Q969R2 916 aa12.02□□□□□ -0.49
TRIM28-210ENST00000597618 ZBED2Q9BTP6 218 aa12.02□□□□□ -0.49
TRIM28-210ENST00000597618 PRR12Q9ULL5 1215 aa12.02□□□□□ -0.49
TRIM28-210ENST00000597618 COL4A4P53420 1690 aaPredicted RBP12.02□□□□□ -0.49
TRIM28-210ENST00000597618 LCHNA4D1U4 455 aa12.01□□□□□ -0.49
TRIM28-210ENST00000597618 ZFYP08048 801 aaPredicted RBP12.01□□□□□ -0.49
TRIM28-210ENST00000597618 MS4A1P11836 297 aa12.01□□□□□ -0.49
TRIM28-210ENST00000597618 ALADP13716 330 aa12.01□□□□□ -0.49
TRIM28-210ENST00000597618 SNAP25P60880 206 aa12.01□□□□□ -0.49
TRIM28-210ENST00000597618 WDR5P61964 334 aaKnown RBP12.01□□□□□ -0.49
TRIM28-210ENST00000597618 TFAP4Q01664 338 aa12.01□□□□□ -0.49
TRIM28-210ENST00000597618 LEXMQ3ZCV2 418 aa12.01□□□□□ -0.49
TRIM28-210ENST00000597618 RCSD1Q6JBY9 416 aa12.01□□□□□ -0.49
TRIM28-210ENST00000597618 KCTD1Q719H9 257 aa12.01□□□□□ -0.49
TRIM28-210ENST00000597618 SPRED2Q7Z698 418 aa12.01□□□□□ -0.49
TRIM28-210ENST00000597618 FAM178BQ8IXR5 827 aa12.01□□□□□ -0.49
TRIM28-210ENST00000597618 KBTBD3Q8NAB2 608 aa12.01□□□□□ -0.49
TRIM28-210ENST00000597618 CAGE1Q8TC20 777 aa12.01□□□□□ -0.49
TRIM28-210ENST00000597618 AFAP1L1Q8TED9 768 aa12.01□□□□□ -0.49
TRIM28-210ENST00000597618 PURBQ96QR8 312 aaKnown RBP12.01□□□□□ -0.49
TRIM28-210ENST00000597618 MPHOSPH6Q99547 160 aaKnown RBP12.01□□□□□ -0.49
TRIM28-210ENST00000597618 NACAP1Q9BZK3 213 aa12.01□□□□□ -0.49
TRIM28-210ENST00000597618 SCN10AQ9Y5Y9 1956 aa12.01□□□□□ -0.49
TRIM28-210ENST00000597618 SCN5AQ14524 2016 aa12.01□□□□□ -0.49
TRIM28-210ENST00000597618 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12□□□□□ -0.49
TRIM28-210ENST00000597618 A6NJR5 290 aa12□□□□□ -0.49
TRIM28-210ENST00000597618 RNF113AO15541 343 aaKnown RBP12□□□□□ -0.49
TRIM28-210ENST00000597618 PARNO95453 639 aaKnown RBP12□□□□□ -0.49
TRIM28-210ENST00000597618 SSTR3P32745 418 aaPredicted RBP12□□□□□ -0.49
TRIM28-210ENST00000597618 BAATQ14032 418 aaPredicted RBP12□□□□□ -0.49
TRIM28-210ENST00000597618 PTGISQ16647 500 aa12□□□□□ -0.49
TRIM28-210ENST00000597618 CSPP1Q1MSJ5 1256 aa12□□□□□ -0.49
TRIM28-210ENST00000597618 SCFD2Q8WU76 684 aa12□□□□□ -0.49
TRIM28-210ENST00000597618 CHMP4CQ96CF2 233 aa12□□□□□ -0.49
TRIM28-210ENST00000597618 UIMC1Q96RL1 719 aa12□□□□□ -0.49
TRIM28-210ENST00000597618 TGS1Q96RS0 853 aaKnown RBP12□□□□□ -0.49
TRIM28-210ENST00000597618 LRRCC1Q9C099 1032 aa12□□□□□ -0.49
TRIM28-210ENST00000597618 ECHDC1Q9NTX5 307 aa12□□□□□ -0.49
TRIM28-210ENST00000597618 DDX19BQ9UMR2 479 aa12□□□□□ -0.49
TRIM28-210ENST00000597618 STX8Q9UNK0 236 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 282.6 ms