RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PARP14Q460N5 1801 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 BAZ2AQ9UIF9 1905 aaKnown RBP13.67□□□□□ -0.22
LDLR-212ENST00000560467 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.67□□□□□ -0.22
LDLR-212ENST00000560467 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.67□□□□□ -0.22
LDLR-212ENST00000560467 GRXCR1A8MXD5 290 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 CPLX1O14810 134 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 DUSP11O75319 330 aaKnown RBP13.67□□□□□ -0.22
LDLR-212ENST00000560467 C6orf222P0C671 652 aaPredicted RBP13.67□□□□□ -0.22
LDLR-212ENST00000560467 CST5P28325 142 aaPredicted RBP13.67□□□□□ -0.22
LDLR-212ENST00000560467 PBX2P40425 430 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 ACVR2BQ13705 512 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 PPP2R5BQ15173 497 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 C16orf59Q7L2K0 433 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 DGKHQ86XP1 1220 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 KIFC2Q96AC6 838 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 ZNF274Q96GC6 653 aaPredicted RBP13.67□□□□□ -0.22
LDLR-212ENST00000560467 TMX3Q96JJ7 454 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 LRRC2Q9BYS8 371 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 ZNF576Q9H609 170 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 KAT14Q9H8E8 782 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 INCENPQ9NQS7 918 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 PRDM6Q9NQX0 595 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 NYAP2Q9P242 653 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.67□□□□□ -0.228e-10■□□□□ 8.4
LDLR-212ENST00000560467 KIF3AQ9Y496 699 aa13.67□□□□□ -0.22
LDLR-212ENST00000560467 SMCHD1A6NHR9 2005 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 IGKV6D-41A0A0C4DH26 115 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 KLF18A0A0U1RQI7 1052 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 ATP2A1O14983 1001 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 ZBTB43O43298 467 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 ZBED4O75132 1171 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 CDKL5O76039 1030 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 ASGR1P07306 291 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 ACRP10323 421 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 CSF2RAP15509 400 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 CCDC144BQ3MJ40 725 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 TMEM240Q5SV17 173 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 MFSD5Q6N075 450 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 ARMCX2Q7L311 632 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 ZNF467Q7Z7K2 595 aaPredicted RBP13.66□□□□□ -0.22
LDLR-212ENST00000560467 LRRC47Q8N1G4 583 aaKnown RBP13.66□□□□□ -0.22
LDLR-212ENST00000560467 PRPF38AQ8NAV1 312 aaKnown RBP13.66□□□□□ -0.22
LDLR-212ENST00000560467 NEDD1Q8NHV4 660 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 VTI1AQ96AJ9 217 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 INTS4Q96HW7 963 aaKnown RBP13.66□□□□□ -0.22
LDLR-212ENST00000560467 GLT1D1Q96MS3 346 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 PPP1R12CQ9BZL4 782 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 UPF3AQ9H1J1 476 aaKnown RBP13.66□□□□□ -0.22
LDLR-212ENST00000560467 SLC38A10Q9HBR0 1119 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 HOMER2Q9NSB8 354 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 TCP11L1Q9NUJ3 509 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 CLIP2Q9UDT6 1046 aa13.66□□□□□ -0.22
LDLR-212ENST00000560467 CTDP1Q9Y5B0 961 aaPredicted RBP13.66□□□□□ -0.22
LDLR-212ENST00000560467 ELP1O95163 1332 aa13.65□□□□□ -0.22
LDLR-212ENST00000560467 TNKSO95271 1327 aa13.65□□□□□ -0.22
LDLR-212ENST00000560467 COL11A1P12107 1806 aaPredicted RBP13.65□□□□□ -0.22
LDLR-212ENST00000560467 A0A0U1RQG5 324 aaPredicted RBP13.65□□□□□ -0.22
LDLR-212ENST00000560467 GOLGA8BA8MQT2 603 aa13.65□□□□□ -0.22
LDLR-212ENST00000560467 SH2B2O14492 632 aaPredicted RBP13.65□□□□□ -0.22
LDLR-212ENST00000560467 CTAGE5O15320 804 aa13.65□□□□□ -0.22
LDLR-212ENST00000560467 PDIA4P13667 645 aaKnown RBP13.65□□□□□ -0.22
LDLR-212ENST00000560467 CDK7P50613 346 aa13.65□□□□□ -0.22
LDLR-212ENST00000560467 APOBRQ0VD83 1088 aa13.65□□□□□ -0.22
LDLR-212ENST00000560467 PPIGQ13427 754 aaKnown RBP eCLIP13.65□□□□□ -0.225e-7■□□□□ 9.3
LDLR-212ENST00000560467 TOB2Q14106 344 aaPredicted RBP13.65□□□□□ -0.22
LDLR-212ENST00000560467 CYB5R4Q7L1T6 521 aa13.65□□□□□ -0.22
LDLR-212ENST00000560467 ANKRD35Q8N283 1001 aa13.65□□□□□ -0.22
LDLR-212ENST00000560467 CEP95Q96GE4 821 aa13.65□□□□□ -0.22
LDLR-212ENST00000560467 ZKSCAN3Q9BRR0 538 aa13.65□□□□□ -0.22
LDLR-212ENST00000560467 PBX4Q9BYU1 374 aa13.65□□□□□ -0.22
LDLR-212ENST00000560467 AGXT2Q9BYV1 514 aa13.65□□□□□ -0.22
LDLR-212ENST00000560467 STX8Q9UNK0 236 aa13.65□□□□□ -0.22
LDLR-212ENST00000560467 MROH7Q68CQ1 1323 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 ARVCFO00192 962 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 PTGS1P23219 599 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 KIF5BP33176 963 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 CYP2C18P33260 490 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 METAP2P50579 478 aaKnown RBP eCLIP13.64□□□□□ -0.23
LDLR-212ENST00000560467 GJA9P57773 515 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 BEX3Q00994 111 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 CNTN2Q02246 1040 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 STK3Q13188 491 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 TJAP1Q5JTD0 557 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 GNASQ5JWF2 1037 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 RASIP1Q5U651 963 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 ZNF365Q70YC5 407 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.64□□□□□ -0.23
LDLR-212ENST00000560467 SGMS1Q86VZ5 419 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 FAM126BQ8IXS8 530 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 CCDC144CPQ8IYA2 1237 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 PCSK9Q8NBP7 692 aaKnown RBP13.64□□□□□ -0.23
LDLR-212ENST00000560467 SPRYD3Q8NCJ5 442 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 CTCFLQ8NI51 663 aaPredicted RBP13.64□□□□□ -0.23
LDLR-212ENST00000560467 IGDCC4Q8TDY8 1250 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 PPM1EQ8WY54 764 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 KATNBL1Q9H079 304 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 ABHD16BQ9H3Z7 469 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 PRDM12Q9H4Q4 367 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 SPC25Q9HBM1 224 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 TPCN1Q9ULQ1 816 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms