RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 PTPDC1A2A3K4 754 aa16.61■□□□□ 0.25
SNHG1-213ENST00000540725 SNHG28P0DPA3 235 aa16.61■□□□□ 0.25
SNHG1-213ENST00000540725 DNAJB2P25686 324 aa16.61■□□□□ 0.25
SNHG1-213ENST00000540725 ITGA7Q13683 1181 aa16.61■□□□□ 0.25
SNHG1-213ENST00000540725 PWP2Q15269 919 aaKnown RBP16.61■□□□□ 0.25
SNHG1-213ENST00000540725 SLC30A10Q6XR72 485 aa16.61■□□□□ 0.25
SNHG1-213ENST00000540725 CHD1LQ86WJ1 897 aa16.61■□□□□ 0.25
SNHG1-213ENST00000540725 PLEKHM2Q8IWE5 1019 aa16.61■□□□□ 0.25
SNHG1-213ENST00000540725 PNMA2Q9UL42 364 aa16.61■□□□□ 0.25
SNHG1-213ENST00000540725 NEDD4P46934 1319 aa16.61■□□□□ 0.25
SNHG1-213ENST00000540725 CHD9Q3L8U1 2897 aa16.6■□□□□ 0.25
SNHG1-213ENST00000540725 SCN10AQ9Y5Y9 1956 aa16.6■□□□□ 0.25
SNHG1-213ENST00000540725 FOSL2P15408 326 aa16.6■□□□□ 0.25
SNHG1-213ENST00000540725 CYP2C18P33260 490 aa16.6■□□□□ 0.25
SNHG1-213ENST00000540725 DUSP28Q4G0W2 176 aa16.6■□□□□ 0.25
SNHG1-213ENST00000540725 CLEC4DQ8WXI8 215 aa16.6■□□□□ 0.25
SNHG1-213ENST00000540725 ESR2Q92731 530 aa16.6■□□□□ 0.25
SNHG1-213ENST00000540725 SEZ6LQ9BYH1 1024 aa16.6■□□□□ 0.25
SNHG1-213ENST00000540725 OSBPL3Q9H4L5 887 aa16.6■□□□□ 0.25
SNHG1-213ENST00000540725 GRIN2DO15399 1336 aa16.6■□□□□ 0.25
SNHG1-213ENST00000540725 WDR19Q8NEZ3 1342 aa16.6■□□□□ 0.25
SNHG1-213ENST00000540725 VCANP13611 3396 aa16.59■□□□□ 0.25
SNHG1-213ENST00000540725 ACRP10323 421 aa16.59■□□□□ 0.25
SNHG1-213ENST00000540725 CALML3P27482 149 aa16.59■□□□□ 0.25
SNHG1-213ENST00000540725 NUCB1Q02818 461 aa16.59■□□□□ 0.25
SNHG1-213ENST00000540725 RASIP1Q5U651 963 aa16.59■□□□□ 0.25
SNHG1-213ENST00000540725 PSRC1Q6PGN9 363 aaPredicted RBP16.59■□□□□ 0.25
SNHG1-213ENST00000540725 RNF207Q6ZRF8 634 aa16.59■□□□□ 0.25
SNHG1-213ENST00000540725 ZNF365Q70YC5 407 aa16.59■□□□□ 0.25
SNHG1-213ENST00000540725 YTHDC1Q96MU7 727 aaKnown RBP16.59■□□□□ 0.25
SNHG1-213ENST00000540725 ZKSCAN3Q9BRR0 538 aa16.59■□□□□ 0.25
SNHG1-213ENST00000540725 WDR11Q9BZH6 1224 aa16.59■□□□□ 0.25
SNHG1-213ENST00000540725 HIPK3Q9H422 1215 aa16.59■□□□□ 0.25
SNHG1-213ENST00000540725 ZNF213O14771 459 aa16.58■□□□□ 0.24
SNHG1-213ENST00000540725 IGHDP01880 384 aa16.58■□□□□ 0.24
SNHG1-213ENST00000540725 PSMC6P62333 389 aa16.58■□□□□ 0.24
SNHG1-213ENST00000540725 GPATCH4Q5T3I0 446 aaKnown RBP16.58■□□□□ 0.24
SNHG1-213ENST00000540725 CWC27Q6UX04 472 aaKnown RBP16.58■□□□□ 0.24
SNHG1-213ENST00000540725 TIFAQ96CG3 184 aa16.58■□□□□ 0.24
SNHG1-213ENST00000540725 COL25A1Q9BXS0 654 aaPredicted RBP16.58■□□□□ 0.24
SNHG1-213ENST00000540725 TRPV6Q9H1D0 765 aa16.58■□□□□ 0.24
SNHG1-213ENST00000540725 IL23AQ9NPF7 189 aa16.58■□□□□ 0.24
SNHG1-213ENST00000540725 DIAPH3Q9NSV4 1193 aa16.58■□□□□ 0.24
SNHG1-213ENST00000540725 UMODL1Q5DID0 1318 aa16.58■□□□□ 0.24
SNHG1-213ENST00000540725 KIAA1217Q5T5P2 1943 aa16.58■□□□□ 0.24
SNHG1-213ENST00000540725 RBM47A0AV96 593 aaKnown RBP16.57■□□□□ 0.24
SNHG1-213ENST00000540725 GOLGA8HP0CJ92 632 aa16.57■□□□□ 0.24
SNHG1-213ENST00000540725 RPS6P62753 249 aaKnown RBP16.57■□□□□ 0.24
SNHG1-213ENST00000540725 GRIN2CQ14957 1233 aa16.57■□□□□ 0.24
SNHG1-213ENST00000540725 DGKHQ86XP1 1220 aa16.57■□□□□ 0.24
SNHG1-213ENST00000540725 NOC4LQ9BVI4 516 aaKnown RBP16.57■□□□□ 0.24
SNHG1-213ENST00000540725 POLR3EQ9NVU0 708 aa16.57■□□□□ 0.24
SNHG1-213ENST00000540725 SCN5AQ14524 2016 aa16.57■□□□□ 0.24
SNHG1-213ENST00000540725 NCOR1O75376 2440 aa16.56■□□□□ 0.24
SNHG1-213ENST00000540725 GRXCR1A8MXD5 290 aa16.56■□□□□ 0.24
SNHG1-213ENST00000540725 B4GALT4O60513 344 aa16.56■□□□□ 0.24
SNHG1-213ENST00000540725 KDM4AO75164 1064 aa16.56■□□□□ 0.24
SNHG1-213ENST00000540725 NT5C2P49902 561 aa16.56■□□□□ 0.24
SNHG1-213ENST00000540725 PDE4DQ08499 809 aa16.56■□□□□ 0.24
SNHG1-213ENST00000540725 USH1GQ495M9 461 aa16.56■□□□□ 0.24
SNHG1-213ENST00000540725 CCDC178Q5BJE1 867 aa16.56■□□□□ 0.24
SNHG1-213ENST00000540725 IQCA1Q86XH1 822 aa16.56■□□□□ 0.24
SNHG1-213ENST00000540725 PNMA1Q8ND90 353 aa16.56■□□□□ 0.24
SNHG1-213ENST00000540725 DNERQ8NFT8 737 aa16.56■□□□□ 0.24
SNHG1-213ENST00000540725 EXOC6Q8TAG9 804 aa16.56■□□□□ 0.24
SNHG1-213ENST00000540725 MPHOSPH6Q99547 160 aaKnown RBP16.56■□□□□ 0.24
SNHG1-213ENST00000540725 PBX4Q9BYU1 374 aa16.56■□□□□ 0.24
SNHG1-213ENST00000540725 UBA5Q9GZZ9 404 aa16.56■□□□□ 0.24
SNHG1-213ENST00000540725 CPVLQ9H3G5 476 aa16.56■□□□□ 0.24
SNHG1-213ENST00000540725 ZNF576Q9H609 170 aa16.56■□□□□ 0.24
SNHG1-213ENST00000540725 HIP1O00291 1037 aa16.55■□□□□ 0.24
SNHG1-213ENST00000540725 EDNRBP24530 442 aa16.55■□□□□ 0.24
SNHG1-213ENST00000540725 PBX2P40425 430 aa16.55■□□□□ 0.24
SNHG1-213ENST00000540725 CPT1AP50416 773 aa16.55■□□□□ 0.24
SNHG1-213ENST00000540725 CCL23P55773 120 aa16.55■□□□□ 0.24
SNHG1-213ENST00000540725 PURAQ00577 322 aaKnown RBP16.55■□□□□ 0.24
SNHG1-213ENST00000540725 TRIP12Q14669 1992 aaPredicted RBP16.55■□□□□ 0.24
SNHG1-213ENST00000540725 PPP2R5BQ15173 497 aa16.55■□□□□ 0.24
SNHG1-213ENST00000540725 OR6J1Q8NGC5 347 aa16.55■□□□□ 0.24
SNHG1-213ENST00000540725 HERVK_113Q902F9 699 aa16.55■□□□□ 0.24
SNHG1-213ENST00000540725 WNT8AQ9H1J5 351 aa16.55■□□□□ 0.24
SNHG1-213ENST00000540725 ALDH8A1Q9H2A2 487 aaPredicted RBP16.55■□□□□ 0.24
SNHG1-213ENST00000540725 CHD7Q9P2D1 2997 aa16.54■□□□□ 0.24
SNHG1-213ENST00000540725 B4E1Z4 1266 aa16.54■□□□□ 0.24
SNHG1-213ENST00000540725 FGBP02675 491 aa16.54■□□□□ 0.24
SNHG1-213ENST00000540725 MYL3P08590 195 aa16.54■□□□□ 0.24
SNHG1-213ENST00000540725 CDC37Q16543 378 aaPredicted RBP16.54■□□□□ 0.24
SNHG1-213ENST00000540725 SCFD2Q8WU76 684 aa16.54■□□□□ 0.24
SNHG1-213ENST00000540725 DSCC1Q9BVC3 393 aa16.54■□□□□ 0.24
SNHG1-213ENST00000540725 MTIF3Q9H2K0 278 aaKnown RBP16.54■□□□□ 0.24
SNHG1-213ENST00000540725 KAT14Q9H8E8 782 aa16.54■□□□□ 0.24
SNHG1-213ENST00000540725 CXXC1Q9P0U4 656 aaPredicted RBP16.54■□□□□ 0.24
SNHG1-213ENST00000540725 BAZ2BQ9UIF8 2168 aaKnown RBP16.54■□□□□ 0.24
SNHG1-213ENST00000540725 RAD50Q92878 1312 aa16.53■□□□□ 0.24
SNHG1-213ENST00000540725 MYH7BA7E2Y1 1941 aa16.53■□□□□ 0.24
SNHG1-213ENST00000540725 B4DLN1 442 aa16.53■□□□□ 0.24
SNHG1-213ENST00000540725 NKRFO15226 690 aaKnown RBP eCLIP16.53■□□□□ 0.24
SNHG1-213ENST00000540725 MRPL12P52815 198 aaKnown RBP16.53■□□□□ 0.24
SNHG1-213ENST00000540725 IMMTQ16891 758 aaKnown RBP16.53■□□□□ 0.24
SNHG1-213ENST00000540725 BRDTQ58F21 947 aaPredicted RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms