RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ZBTB17Q13105 803 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 OSBP2Q969R2 916 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 EPSTI1Q96J88 318 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 KRT12Q99456 494 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 MED14O60244 1454 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 SPATA31A3Q5VYP0 1347 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 CFBP00751 764 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 WDR44Q5JSH3 913 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 SARM1Q6SZW1 724 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 VSTM4Q8IW00 320 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 FLAD1Q8NFF5 587 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 SAAL1Q96ER3 474 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 LSM14BQ9BX40 385 aaKnown RBP12.6□□□□□ -0.39
VPS39-201ENST00000318006 CNOT10Q9H9A5 744 aaKnown RBP12.6□□□□□ -0.39
VPS39-201ENST00000318006 ANKRD65E5RJM6 399 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 IFNAR2P48551 515 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 GALNT17Q6IS24 598 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 PI16Q6UXB8 463 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 RUNDC3BQ96NL0 473 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 NT5C3AQ9H0P0 336 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 CLIC4Q9Y696 253 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 QRICH2Q9H0J4 1663 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 PPIP5K2O43314 1243 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 CTNND1O60716 968 aaKnown RBP12.59□□□□□ -0.39
VPS39-201ENST00000318006 PPFIA2O75334 1257 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 NR1D1P20393 614 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 NECTIN1Q15223 517 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 EPB41L5Q9HCM4 733 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 LEMD3Q9Y2U8 911 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 TACC3Q9Y6A5 838 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 GTPBP6O43824 516 aaPredicted RBP12.59□□□□□ -0.39
VPS39-201ENST00000318006 IGKV5-2P06315 115 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 BCRP11274 1271 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 POLE2P56282 527 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 RBL2Q08999 1139 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 U2AF1L4Q8WU68 220 aaKnown RBP12.59□□□□□ -0.39
VPS39-201ENST00000318006 TMOD4Q9NZQ9 345 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 CARMIL3Q8ND23 1372 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 SETBP1Q9Y6X0 1596 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 XDHP47989 1333 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 CPXCR1Q8N123 301 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 AFAP1L2Q8N4X5 818 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 NOP53Q9NZM5 478 aaKnown RBP12.59□□□□□ -0.39
VPS39-201ENST00000318006 RNF14Q9UBS8 474 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 RCOR1Q9UKL0 485 aa12.59□□□□□ -0.39
VPS39-201ENST00000318006 DKC1O60832 514 aaKnown RBP eCLIP12.58□□□□□ -0.4
VPS39-201ENST00000318006 SKIP12755 728 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 BRINP3Q76B58 766 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 FBXO41Q8TF61 875 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 CLIC6Q96NY7 704 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 FNBP1Q96RU3 617 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 TSC22D3Q99576 134 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 PUS7LQ9H0K6 701 aaKnown RBP12.58□□□□□ -0.4
VPS39-201ENST00000318006 AXIN2Q9Y2T1 843 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 STAT1P42224 750 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 RNASELQ05823 741 aaKnown RBP12.58□□□□□ -0.4
VPS39-201ENST00000318006 SLC39A14Q15043 492 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 FNBP4Q8N3X1 1017 aaPredicted RBP12.58□□□□□ -0.4
VPS39-201ENST00000318006 LRRC8CQ8TDW0 803 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 TYW1Q9NV66 732 aaKnown RBP12.58□□□□□ -0.4
VPS39-201ENST00000318006 IL9RQ01113 521 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 NBPF9Q3BBW0 867 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 UHMK1Q8TAS1 419 aaKnown RBP12.58□□□□□ -0.4
VPS39-201ENST00000318006 GRK7Q8WTQ7 553 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 HOOK2Q96ED9 719 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 RNF26Q9BY78 433 aaPredicted RBP12.58□□□□□ -0.4
VPS39-201ENST00000318006 THAP12O43422 761 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 BIRC3Q13489 604 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 NIM1KQ8IY84 436 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 UIMC1Q96RL1 719 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 POLR3EQ9NVU0 708 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 TBC1D7Q9P0N9 293 aa12.58□□□□□ -0.4
VPS39-201ENST00000318006 GOLGA8HP0CJ92 632 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 MYCLP12524 364 aaPredicted RBP12.57□□□□□ -0.4
VPS39-201ENST00000318006 EHHADHQ08426 723 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 NEK8Q86SG6 692 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 NELFCDQ8IXH7 590 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 TTLL11Q8NHH1 800 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 GPKOWQ92917 476 aaPredicted RBP eCLIP12.57□□□□□ -0.4
VPS39-201ENST00000318006 GSDMAQ96QA5 445 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 EXOC7Q9UPT5 735 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 HMGB1P1B2RPK0 211 aaPredicted RBP12.57□□□□□ -0.4
VPS39-201ENST00000318006 H2AFZP0C0S5 128 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 ERFEQ4G0M1 354 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 H2AFVQ71UI9 128 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 NLGN1Q8N2Q7 840 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 ANKRD13CQ8N6S4 541 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 CHURC1Q8WUH1 139 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 CLTCQ00610 1675 aaKnown RBP12.57□□□□□ -0.4
VPS39-201ENST00000318006 ZBED4O75132 1171 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 PPP6R2O75170 966 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 OR52Z1P0C646 297 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 EPHA10Q5JZY3 1008 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 EMBQ6PCB8 327 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 NSMFQ6X4W1 530 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 FOXP1Q9H334 677 aaPredicted RBP12.57□□□□□ -0.4
VPS39-201ENST00000318006 PSTPIP2Q9H939 334 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 TXLNGQ9NUQ3 528 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 KDM3AQ9Y4C1 1321 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 USP31Q70CQ4 1352 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms