RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 NEDD9Q14511 834 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 PTGISQ16647 500 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 ANKRD40Q6AI12 368 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 SPATA5Q8NB90 893 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 TRIM58Q8NG06 486 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 PLAAQ9Y263 795 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 AFDNP55196 1824 aaKnown RBP15.93■□□□□ 0.14
SDC1-201ENST00000254351 CHUKO15111 745 aa15.93■□□□□ 0.14
SDC1-201ENST00000254351 CLNS1AP54105 237 aaKnown RBP15.93■□□□□ 0.14
SDC1-201ENST00000254351 EHHADHQ08426 723 aa15.93■□□□□ 0.14
SDC1-201ENST00000254351 UBE3CQ15386 1083 aa15.93■□□□□ 0.14
SDC1-201ENST00000254351 ADSSL1Q8N142 457 aa15.93■□□□□ 0.14
SDC1-201ENST00000254351 ZNF507Q8TCN5 953 aa15.93■□□□□ 0.14
SDC1-201ENST00000254351 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.93■□□□□ 0.14
SDC1-201ENST00000254351 MTMR8Q96EF0 704 aa15.93■□□□□ 0.14
SDC1-201ENST00000254351 PHF20Q9BVI0 1012 aa15.93■□□□□ 0.14
SDC1-201ENST00000254351 NACAP1Q9BZK3 213 aa15.93■□□□□ 0.14
SDC1-201ENST00000254351 C4AP0C0L4 1744 aa15.93■□□□□ 0.14
SDC1-201ENST00000254351 C4BP0C0L5 1744 aa15.93■□□□□ 0.14
SDC1-201ENST00000254351 ENAHQ8N8S7 591 aaPredicted RBP15.93■□□□□ 0.14
SDC1-201ENST00000254351 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.93■□□□□ 0.14
SDC1-201ENST00000254351 CNNM2Q9H8M5 875 aa15.93■□□□□ 0.14
SDC1-201ENST00000254351 VEZTQ9HBM0 779 aa15.93■□□□□ 0.14
SDC1-201ENST00000254351 SLC39A2Q9NP94 309 aa15.93■□□□□ 0.14
SDC1-201ENST00000254351 SMIM23A6NLE4 172 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 PHF20L1A8MW92 1017 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 PCCAP05165 728 aaPredicted RBP15.92■□□□□ 0.14
SDC1-201ENST00000254351 SLC1A4P43007 532 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 DNM2P50570 870 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 ALS2CR12Q96Q35 445 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 DDX20Q9UHI6 824 aaKnown RBP15.92■□□□□ 0.14
SDC1-201ENST00000254351 RIPOR2Q9Y4F9 1068 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 TCRBV5S4A2TA0A5A2 114 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 UBA7P41226 1012 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 PDE4DQ08499 809 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 STK4Q13043 487 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 MICALCLQ6ZW33 695 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 BAIAP2L1Q9UHR4 511 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 GGT7Q9UJ14 662 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 HYOU1Q9Y4L1 999 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 C5P01031 1676 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 COL5A2P05997 1499 aaPredicted RBP15.92■□□□□ 0.14
SDC1-201ENST00000254351 DNM1LO00429 736 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 PEX19P40855 299 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 MMGT1Q8N4V1 131 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 TRIM31Q9BZY9 425 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 SH2D4AQ9H788 454 aa15.92■□□□□ 0.14
SDC1-201ENST00000254351 WTIPA6NIX2 430 aaPredicted RBP15.91■□□□□ 0.14
SDC1-201ENST00000254351 LRRC53A6NM62 1247 aa15.91■□□□□ 0.14
SDC1-201ENST00000254351 DCDC2CA8MYV0 355 aa15.91■□□□□ 0.14
SDC1-201ENST00000254351 MDH1P40925 334 aaKnown RBP15.91■□□□□ 0.14
SDC1-201ENST00000254351 ASIC1P78348 528 aa15.91■□□□□ 0.14
SDC1-201ENST00000254351 ZBED6P86452 979 aa15.91■□□□□ 0.14
SDC1-201ENST00000254351 CATIPQ7Z7H3 387 aa15.91■□□□□ 0.14
SDC1-201ENST00000254351 CYFIP2Q96F07 1278 aa15.91■□□□□ 0.14
SDC1-201ENST00000254351 RMND1Q9NWS8 449 aa15.91■□□□□ 0.14
SDC1-201ENST00000254351 ANKRD18BA2A2Z9 1011 aa15.91■□□□□ 0.14
SDC1-201ENST00000254351 GOLGA6L10A6NI86 522 aa15.91■□□□□ 0.14
SDC1-201ENST00000254351 FSBPO95073 299 aa15.91■□□□□ 0.14
SDC1-201ENST00000254351 GBP2P32456 591 aaPredicted RBP15.91■□□□□ 0.14
SDC1-201ENST00000254351 ATP2C1P98194 919 aaPredicted RBP15.91■□□□□ 0.14
SDC1-201ENST00000254351 EMBQ6PCB8 327 aa15.91■□□□□ 0.14
SDC1-201ENST00000254351 UBLCP1Q8WVY7 318 aaPredicted RBP15.91■□□□□ 0.14
SDC1-201ENST00000254351 CASKIN2Q8WXE0 1202 aa15.91■□□□□ 0.14
SDC1-201ENST00000254351 AP1M1Q9BXS5 423 aa15.91■□□□□ 0.14
SDC1-201ENST00000254351 TRMT112Q9UI30 125 aaKnown RBP15.91■□□□□ 0.14
SDC1-201ENST00000254351 ANO9A1A5B4 782 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 SRGNP10124 158 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 ALS2CLQ60I27 953 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 CACNA2D4Q7Z3S7 1137 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 ADGRA1Q86SQ6 560 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 IFT20Q8IY31 132 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 MDM1Q8TC05 714 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 VCPKMTQ9H867 229 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 PDS5AQ29RF7 1337 aaKnown RBP15.9■□□□□ 0.14
SDC1-201ENST00000254351 WDR17Q8IZU2 1322 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 PDE8BO95263 885 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 CYP7A1P22680 504 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 SNCBQ16143 134 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 NAIF1Q69YI7 327 aaPredicted RBP15.9■□□□□ 0.14
SDC1-201ENST00000254351 CYB5D1Q6P9G0 228 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 DYMQ7RTS9 669 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 TLR10Q9BXR5 811 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 TMEM60Q9H2L4 133 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 CLGNO14967 610 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 ACCSLQ4AC99 568 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 PNMA8AQ86V59 439 aaPredicted RBP15.9■□□□□ 0.14
SDC1-201ENST00000254351 SRBD1Q8N5C6 995 aaKnown RBP15.9■□□□□ 0.14
SDC1-201ENST00000254351 LRRC15Q8TF66 581 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 THOC1Q96FV9 657 aaKnown RBP15.9■□□□□ 0.14
SDC1-201ENST00000254351 DUSP9Q99956 384 aaKnown RBP15.9■□□□□ 0.14
SDC1-201ENST00000254351 RNF26Q9BY78 433 aaPredicted RBP15.9■□□□□ 0.14
SDC1-201ENST00000254351 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.9■□□□□ 0.14
SDC1-201ENST00000254351 JAG2Q9Y219 1238 aa15.9■□□□□ 0.14
SDC1-201ENST00000254351 KAT6BQ8WYB5 2073 aa15.89■□□□□ 0.13
SDC1-201ENST00000254351 PALMO75781 387 aa15.89■□□□□ 0.13
SDC1-201ENST00000254351 DYNLL1P63167 89 aaKnown RBP15.89■□□□□ 0.13
SDC1-201ENST00000254351 SKOR1P84550 965 aa15.89■□□□□ 0.13
SDC1-201ENST00000254351 INF2Q27J81 1249 aa15.89■□□□□ 0.13
SDC1-201ENST00000254351 PARP9Q8IXQ6 854 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 262 ms