RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C ECM30Q06673 1274 aa2.16□□□□□ -2.06
RTR1YER139C SDH5Q08230 162 aa2.16□□□□□ -2.06
RTR1YER139C HEM15P16622 393 aa2.15□□□□□ -2.07
RTR1YER139C VPS27P40343 622 aaKnown RBP2.15□□□□□ -2.07
RTR1YER139C YMR027WQ04371 470 aa2.15□□□□□ -2.07
RTR1YER139C YKL133CP36066 463 aa2.14□□□□□ -2.07
RTR1YER139C DIA4P38705 446 aaPredicted RBP2.14□□□□□ -2.07
RTR1YER139C NPR3P38742 1146 aa2.14□□□□□ -2.07
RTR1YER139C ELO1P39540 310 aa2.14□□□□□ -2.07
RTR1YER139C IME4P41833 600 aa2.14□□□□□ -2.07
RTR1YER139C ALT2P52892 507 aa2.14□□□□□ -2.07
RTR1YER139C DUG3P53871 357 aa2.14□□□□□ -2.07
RTR1YER139C REG1Q00816 1014 aa2.14□□□□□ -2.07
RTR1YER139C MLC2Q06580 163 aa2.14□□□□□ -2.07
RTR1YER139C ESA1Q08649 445 aa2.14□□□□□ -2.07
RTR1YER139C NYV1Q12255 253 aa2.14□□□□□ -2.07
RTR1YER139C CHS1P08004 1131 aa2.13□□□□□ -2.07
RTR1YER139C ERG8P24521 451 aa2.13□□□□□ -2.07
RTR1YER139C SGF29P25554 259 aa2.13□□□□□ -2.07
RTR1YER139C MRPL36P36531 177 aa2.13□□□□□ -2.07
RTR1YER139C HIS6P40545 261 aa2.13□□□□□ -2.07
RTR1YER139C IST3P40565 148 aaPredicted RBP2.13□□□□□ -2.07
RTR1YER139C YFL067WP43537 175 aa2.13□□□□□ -2.07
RTR1YER139C TAN1P53072 289 aaPredicted RBP2.13□□□□□ -2.07
RTR1YER139C ERG26P53199 349 aaKnown RBP2.13□□□□□ -2.07
RTR1YER139C BUD32P53323 261 aa2.13□□□□□ -2.07
RTR1YER139C SLD5Q03406 294 aa2.13□□□□□ -2.07
RTR1YER139C RTT109Q07794 436 aa2.13□□□□□ -2.07
RTR1YER139C PSK2Q08217 1101 aa2.13□□□□□ -2.07
RTR1YER139C GAL1P04385 528 aa2.12□□□□□ -2.07
RTR1YER139C HIP1P06775 603 aa2.12□□□□□ -2.07
RTR1YER139C PAH1P32567 862 aa2.12□□□□□ -2.07
RTR1YER139C MTR2P34232 184 aaKnown RBP2.12□□□□□ -2.07
RTR1YER139C HCS1P34243 683 aa2.12□□□□□ -2.07
RTR1YER139C TMA108P40462 946 aa2.12□□□□□ -2.07
RTR1YER139C MET14Q02196 202 aa2.12□□□□□ -2.07
RTR1YER139C IRC15Q02733 499 aa2.12□□□□□ -2.07
RTR1YER139C VPS74Q06385 345 aa2.12□□□□□ -2.07
RTR1YER139C YBR085C-AO43137 85 aa2.11□□□□□ -2.07
RTR1YER139C PEP5P12868 1029 aa2.11□□□□□ -2.07
RTR1YER139C YEF3P16521 1044 aaKnown RBP2.11□□□□□ -2.07
RTR1YER139C CPR4P25334 318 aa2.11□□□□□ -2.07
RTR1YER139C MID2P36027 376 aa2.11□□□□□ -2.07
RTR1YER139C PSD1P39006 500 aa2.11□□□□□ -2.07
RTR1YER139C BUR6P40096 142 aa2.11□□□□□ -2.07
RTR1YER139C PSF2P40359 213 aa2.11□□□□□ -2.07
RTR1YER139C SHR3Q02774 210 aa2.11□□□□□ -2.07
RTR1YER139C TSR1Q07381 788 aaKnown RBP2.11□□□□□ -2.07
RTR1YER139C TEN1Q07921 160 aa2.11□□□□□ -2.07
RTR1YER139C YCR007CP25354 239 aa2.1□□□□□ -2.07
RTR1YER139C PTP2P29461 750 aa2.1□□□□□ -2.07
RTR1YER139C GWT1P47026 490 aa2.1□□□□□ -2.07
RTR1YER139C RPS7BP48164 190 aaKnown RBP2.1□□□□□ -2.07
RTR1YER139C WTM1Q12363 437 aaKnown RBP2.1□□□□□ -2.07
RTR1YER139C ATP4P05626 244 aa2.09□□□□□ -2.07
RTR1YER139C YCL049CP25577 312 aa2.09□□□□□ -2.07
RTR1YER139C YKL100CP34248 587 aa2.09□□□□□ -2.07
RTR1YER139C PIM1P36775 1133 aa2.09□□□□□ -2.07
RTR1YER139C PIR3Q03180 325 aa2.09□□□□□ -2.07
RTR1YER139C LEU9Q12166 604 aaKnown RBP2.09□□□□□ -2.07
RTR1YER139C BI3Q9ZZW7 517 aa2.09□□□□□ -2.07
RTR1YER139C PET123P17558 318 aa2.08□□□□□ -2.08
RTR1YER139C YJR154WP47181 346 aa2.08□□□□□ -2.08
RTR1YER139C TOF1P53840 1238 aa2.08□□□□□ -2.08
RTR1YER139C INA17Q02888 182 aa2.08□□□□□ -2.08
RTR1YER139C IVY1Q04934 453 aa2.08□□□□□ -2.08
RTR1YER139C YKL023WP36103 277 aaKnown RBP2.07□□□□□ -2.08
RTR1YER139C KTR3P38130 404 aaPredicted RBP2.07□□□□□ -2.08
RTR1YER139C IFA38P38286 347 aa2.07□□□□□ -2.08
RTR1YER139C YHL041WP38730 149 aa2.07□□□□□ -2.08
RTR1YER139C YJR008WP47085 338 aa2.07□□□□□ -2.08
RTR1YER139C DIA3P52290 468 aa2.07□□□□□ -2.08
RTR1YER139C ARC35P53731 342 aaKnown RBP2.07□□□□□ -2.08
RTR1YER139C CAF40P53829 373 aa2.07□□□□□ -2.08
RTR1YER139C THP3Q12049 470 aaKnown RBP2.07□□□□□ -2.08
RTR1YER139C LSP1Q12230 341 aaKnown RBP2.07□□□□□ -2.08
RTR1YER139C PHO81P17442 1178 aa2.06□□□□□ -2.08
RTR1YER139C BUD5P25300 642 aaPredicted RBP2.06□□□□□ -2.08
RTR1YER139C ELP2P42935 788 aa2.06□□□□□ -2.08
RTR1YER139C VPS4P52917 437 aa2.06□□□□□ -2.08
RTR1YER139C RAD16P31244 790 aa2.05□□□□□ -2.08
RTR1YER139C SDH3P33421 198 aa2.05□□□□□ -2.08
RTR1YER139C DRN1P53255 507 aaKnown RBP2.05□□□□□ -2.08
RTR1YER139C PAP2P53632 584 aaKnown RBP2.05□□□□□ -2.08
RTR1YER139C HRI1Q05905 244 aaKnown RBP2.05□□□□□ -2.08
RTR1YER139C SKG3Q06315 1026 aa2.05□□□□□ -2.08
RTR1YER139C ETT1Q08421 412 aaKnown RBP2.05□□□□□ -2.08
RTR1YER139C YBL111CQ3E7Y5 667 aa2.05□□□□□ -2.08
RTR1YER139C NUC1P08466 329 aa2.04□□□□□ -2.08
RTR1YER139C HSP26P15992 214 aaKnown RBP RIP-Chip data2.04□□□□□ -2.08not detected
RTR1YER139C APA1P16550 321 aaKnown RBP2.04□□□□□ -2.08
RTR1YER139C PWP1P21304 576 aaKnown RBP2.04□□□□□ -2.08
RTR1YER139C PDB1P32473 366 aaKnown RBP2.04□□□□□ -2.08
RTR1YER139C YKL097CP34245 136 aa2.04□□□□□ -2.08
RTR1YER139C ACA1P39970 489 aa2.04□□□□□ -2.08
RTR1YER139C DSD1P53095 428 aa2.04□□□□□ -2.08
RTR1YER139C IOC4Q04213 475 aa2.04□□□□□ -2.08
RTR1YER139C TFC6Q06339 672 aa2.04□□□□□ -2.08
RTR1YER139C NUS1Q12063 375 aa2.04□□□□□ -2.08
RTR1YER139C EXO70P19658 623 aa2.03□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 109.1 ms