RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 UBE2SQ16763 222 aa34.98■■■■□ 3.19
CTCF-203ENST00000566078 KRT25Q7Z3Z0 450 aa34.98■■■■□ 3.19
CTCF-203ENST00000566078 TMEM260Q9NX78 707 aa34.98■■■■□ 3.19
CTCF-203ENST00000566078 RCOR1Q9UKL0 485 aa34.98■■■■□ 3.19
CTCF-203ENST00000566078 ZNF536O15090 1300 aa34.97■■■■□ 3.19
CTCF-203ENST00000566078 GADD45BO75293 160 aaPredicted RBP34.97■■■■□ 3.19
CTCF-203ENST00000566078 YEATS4O95619 227 aa34.97■■■■□ 3.19
CTCF-203ENST00000566078 ICAM1P05362 532 aa34.97■■■■□ 3.19
CTCF-203ENST00000566078 DSG3P32926 999 aa34.97■■■■□ 3.19
CTCF-203ENST00000566078 COG2Q14746 738 aa34.97■■■■□ 3.19
CTCF-203ENST00000566078 JAKMIP3Q5VZ66 844 aa34.97■■■■□ 3.19
CTCF-203ENST00000566078 ZBED4O75132 1171 aa34.96■■■■□ 3.19
CTCF-203ENST00000566078 FDX1P10109 184 aa34.96■■■■□ 3.19
CTCF-203ENST00000566078 LINC00301Q8NCQ3 95 aa34.96■■■■□ 3.19
CTCF-203ENST00000566078 WNK4Q96J92 1243 aa34.96■■■■□ 3.19
CTCF-203ENST00000566078 CCPG1Q9ULG6 757 aa34.96■■■■□ 3.19
CTCF-203ENST00000566078 ABCB11O95342 1321 aa34.96■■■■□ 3.19
CTCF-203ENST00000566078 VWA5AO00534 786 aa34.95■■■■□ 3.19
CTCF-203ENST00000566078 AGBL1Q96MI9 1066 aa34.95■■■■□ 3.19
CTCF-203ENST00000566078 CLK2P49760 499 aaKnown RBP34.95■■■■□ 3.18
CTCF-203ENST00000566078 PCDHB6Q9Y5E3 794 aa34.95■■■■□ 3.18
CTCF-203ENST00000566078 MYPNQ86TC9 1320 aa34.94■■■■□ 3.18
CTCF-203ENST00000566078 KIF3CO14782 793 aa34.94■■■■□ 3.18
CTCF-203ENST00000566078 TRAPPC10P48553 1259 aa34.94■■■■□ 3.18
CTCF-203ENST00000566078 SNAPC2Q13487 334 aa34.94■■■■□ 3.18
CTCF-203ENST00000566078 NONOQ15233 471 aaKnown RBP eCLIP34.94■■■■□ 3.18
CTCF-203ENST00000566078 TPRNQ4KMQ1 711 aa34.94■■■■□ 3.18
CTCF-203ENST00000566078 CPXCR1Q8N123 301 aa34.94■■■■□ 3.18
CTCF-203ENST00000566078 RAVER2Q9HCJ3 691 aaKnown RBP34.94■■■■□ 3.18
CTCF-203ENST00000566078 INF2Q27J81 1249 aa34.93■■■■□ 3.18
CTCF-203ENST00000566078 TTC38Q5R3I4 469 aa34.93■■■■□ 3.18
CTCF-203ENST00000566078 MRPL11Q9Y3B7 192 aaKnown RBP34.93■■■■□ 3.18
CTCF-203ENST00000566078 OPLAHO14841 1288 aa34.92■■■■□ 3.18
CTCF-203ENST00000566078 TRAK2O60296 914 aa34.92■■■■□ 3.18
CTCF-203ENST00000566078 UBE2HP62256 183 aa34.92■■■■□ 3.18
CTCF-203ENST00000566078 MOGSQ13724 837 aa34.92■■■■□ 3.18
CTCF-203ENST00000566078 USP17L6PQ6QN14 398 aa34.92■■■■□ 3.18
CTCF-203ENST00000566078 FASTKD5Q7L8L6 764 aaKnown RBP34.92■■■■□ 3.18
CTCF-203ENST00000566078 KCNG4Q8TDN1 519 aa34.92■■■■□ 3.18
CTCF-203ENST00000566078 ADAMTS5Q9UNA0 930 aa34.92■■■■□ 3.18
CTCF-203ENST00000566078 AGTPBP1Q9UPW5 1226 aa34.92■■■■□ 3.18
CTCF-203ENST00000566078 SPDYE16A6NNV3 312 aaPredicted RBP34.92■■■■□ 3.18
CTCF-203ENST00000566078 SPTLC2O15270 562 aa34.92■■■■□ 3.18
CTCF-203ENST00000566078 SLC39A14Q15043 492 aa34.92■■■■□ 3.18
CTCF-203ENST00000566078 PTPAQ15257 358 aa34.92■■■■□ 3.18
CTCF-203ENST00000566078 PGBD1Q96JS3 809 aa34.92■■■■□ 3.18
CTCF-203ENST00000566078 HOXC10Q9NYD6 342 aa34.92■■■■□ 3.18
CTCF-203ENST00000566078 PASKQ96RG2 1323 aa34.91■■■■□ 3.18
CTCF-203ENST00000566078 WNT7AO00755 349 aa34.91■■■■□ 3.18
CTCF-203ENST00000566078 HOXA7P31268 230 aaPredicted RBP34.91■■■■□ 3.18
CTCF-203ENST00000566078 DDX49Q9Y6V7 483 aaKnown RBP34.91■■■■□ 3.18
CTCF-203ENST00000566078 MEIS2O14770 477 aa34.9■■■■□ 3.18
CTCF-203ENST00000566078 HUNKP57058 714 aa34.9■■■■□ 3.18
CTCF-203ENST00000566078 SKOR2Q2VWA4 1001 aaPredicted RBP34.9■■■■□ 3.18
CTCF-203ENST00000566078 REPS2Q8NFH8 660 aa34.9■■■■□ 3.18
CTCF-203ENST00000566078 EIF4ENIF1Q9NRA8 985 aaKnown RBP34.9■■■■□ 3.18
CTCF-203ENST00000566078 PNMA2Q9UL42 364 aa34.9■■■■□ 3.18
CTCF-203ENST00000566078 CEP131Q9UPN4 1083 aa34.9■■■■□ 3.18
CTCF-203ENST00000566078 ME1P48163 572 aa34.89■■■■□ 3.18
CTCF-203ENST00000566078 MKRN3Q13064 507 aaKnown RBP34.89■■■■□ 3.18
CTCF-203ENST00000566078 GPT2Q8TD30 523 aa34.89■■■■□ 3.18
CTCF-203ENST00000566078 IRX3P78415 501 aaPredicted RBP34.88■■■■□ 3.17
CTCF-203ENST00000566078 SMC1BQ8NDV3 1235 aa34.88■■■■□ 3.17
CTCF-203ENST00000566078 GOLGA6L4A6NEF3 574 aa34.88■■■■□ 3.17
CTCF-203ENST00000566078 ALAS1P13196 640 aa34.88■■■■□ 3.17
CTCF-203ENST00000566078 ZNF174Q15697 407 aa34.88■■■■□ 3.17
CTCF-203ENST00000566078 TBCKQ8TEA7 893 aa34.88■■■■□ 3.17
CTCF-203ENST00000566078 MBD3O95983 291 aa34.87■■■■□ 3.17
CTCF-203ENST00000566078 OAZ1P54368 228 aa34.87■■■■□ 3.17
CTCF-203ENST00000566078 AP3B2Q13367 1082 aa34.87■■■■□ 3.17
CTCF-203ENST00000566078 PIK3CDO00329 1044 aa34.86■■■■□ 3.17
CTCF-203ENST00000566078 MARCKSP29966 332 aaPredicted RBP34.86■■■■□ 3.17
CTCF-203ENST00000566078 GTF2A2P52657 109 aa34.86■■■■□ 3.17
CTCF-203ENST00000566078 PABPC4Q13310 644 aaKnown RBP eCLIP34.86■■■■□ 3.17
CTCF-203ENST00000566078 SPRYD7Q5W111 196 aa34.86■■■■□ 3.17
CTCF-203ENST00000566078 NEK8Q86SG6 692 aa34.86■■■■□ 3.17
CTCF-203ENST00000566078 PCDHA7Q9UN72 937 aa34.86■■■■□ 3.17
CTCF-203ENST00000566078 CFBP00751 764 aa34.85■■■■□ 3.17
CTCF-203ENST00000566078 ZBTB48P10074 688 aaPredicted RBP34.85■■■■□ 3.17
CTCF-203ENST00000566078 HOXA13P31271 388 aaPredicted RBP34.85■■■■□ 3.17
CTCF-203ENST00000566078 TMEM132BQ14DG7 1078 aa34.85■■■■□ 3.17
CTCF-203ENST00000566078 KLHL40Q2TBA0 621 aa34.85■■■■□ 3.17
CTCF-203ENST00000566078 MCTP2Q6DN12 878 aa34.85■■■■□ 3.17
CTCF-203ENST00000566078 GPAT2Q6NUI2 795 aa34.85■■■■□ 3.17
CTCF-203ENST00000566078 TEX2Q8IWB9 1127 aa34.85■■■■□ 3.17
CTCF-203ENST00000566078 JMYQ8N9B5 988 aa34.85■■■■□ 3.17
CTCF-203ENST00000566078 ANO3Q9BYT9 981 aa34.85■■■■□ 3.17
CTCF-203ENST00000566078 ASCC2Q9H1I8 757 aaPredicted RBP34.85■■■■□ 3.17
CTCF-203ENST00000566078 HOMER2Q9NSB8 354 aa34.85■■■■□ 3.17
CTCF-203ENST00000566078 ZNF214Q9UL59 606 aaPredicted RBP34.85■■■■□ 3.17
CTCF-203ENST00000566078 PPP6R2O75170 966 aa34.84■■■■□ 3.17
CTCF-203ENST00000566078 BMP15O95972 392 aa34.84■■■■□ 3.17
CTCF-203ENST00000566078 CETPP11597 493 aa34.84■■■■□ 3.17
CTCF-203ENST00000566078 MCM7P33993 719 aa34.84■■■■□ 3.17
CTCF-203ENST00000566078 SNRNP48Q6IEG0 339 aaKnown RBP34.84■■■■□ 3.17
CTCF-203ENST00000566078 GCOM1H8Y6P7 765 aaPredicted RBP34.84■■■■□ 3.17
CTCF-203ENST00000566078 POLR2MP0CAP2 368 aa34.84■■■■□ 3.17
CTCF-203ENST00000566078 CLEC4DQ8WXI8 215 aa34.84■■■■□ 3.17
CTCF-203ENST00000566078 P2RX7Q99572 595 aaKnown RBP34.84■■■■□ 3.17
CTCF-203ENST00000566078 SPDYE3A6NKU9 549 aa34.83■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms