RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.74□□□□□ -0.21
LDLR-212ENST00000560467 ALDH8A1Q9H2A2 487 aaPredicted RBP13.74□□□□□ -0.21
LDLR-212ENST00000560467 KANSL2Q9H9L4 492 aa13.74□□□□□ -0.21
LDLR-212ENST00000560467 GOPCQ9HD26 462 aa13.74□□□□□ -0.21
LDLR-212ENST00000560467 SH2B1Q9NRF2 756 aaPredicted RBP13.74□□□□□ -0.21
LDLR-212ENST00000560467 SYNRGQ9UMZ2 1314 aa13.73□□□□□ -0.21
LDLR-212ENST00000560467 MYH7P12883 1935 aa13.73□□□□□ -0.21
LDLR-212ENST00000560467 MYADML2A6NDP7 307 aa13.73□□□□□ -0.21
LDLR-212ENST00000560467 TSPY2A6NKD2 308 aa13.73□□□□□ -0.21
LDLR-212ENST00000560467 ORC4O43929 436 aa13.73□□□□□ -0.21
LDLR-212ENST00000560467 KDM4AO75164 1064 aa13.73□□□□□ -0.21
LDLR-212ENST00000560467 RAG1P15918 1043 aa13.73□□□□□ -0.21
LDLR-212ENST00000560467 FPGSQ05932 587 aa13.73□□□□□ -0.21
LDLR-212ENST00000560467 TMEM39AQ9NV64 488 aa13.73□□□□□ -0.21
LDLR-212ENST00000560467 NAP1L2Q9ULW6 460 aaPredicted RBP13.73□□□□□ -0.21
LDLR-212ENST00000560467 CNPY2Q9Y2B0 182 aa13.73□□□□□ -0.21
LDLR-212ENST00000560467 DIS3Q9Y2L1 958 aaKnown RBP13.73□□□□□ -0.21
LDLR-212ENST00000560467 B4E1Z4 1266 aa13.72□□□□□ -0.21
LDLR-212ENST00000560467 IFIT3O14879 490 aaKnown RBP13.72□□□□□ -0.21
LDLR-212ENST00000560467 DHX16O60231 1041 aaKnown RBP13.72□□□□□ -0.21
LDLR-212ENST00000560467 TSPY3P0CV98 308 aa13.72□□□□□ -0.21
LDLR-212ENST00000560467 TSPY8P0CW00 308 aa13.72□□□□□ -0.21
LDLR-212ENST00000560467 ACLYP53396 1101 aa13.72□□□□□ -0.21
LDLR-212ENST00000560467 IRX5P78411 483 aaPredicted RBP13.72□□□□□ -0.21
LDLR-212ENST00000560467 FAAP100Q0VG06 881 aa13.72□□□□□ -0.21
LDLR-212ENST00000560467 TMEM67Q5HYA8 995 aa13.72□□□□□ -0.21
LDLR-212ENST00000560467 SNRNP48Q6IEG0 339 aaKnown RBP13.72□□□□□ -0.21
LDLR-212ENST00000560467 Q6ZUG5 572 aa13.72□□□□□ -0.21
LDLR-212ENST00000560467 TBC1D10CQ8IV04 446 aa13.72□□□□□ -0.21
LDLR-212ENST00000560467 USP38Q8NB14 1042 aa13.72□□□□□ -0.21
LDLR-212ENST00000560467 SLF1Q9BQI6 1058 aa13.72□□□□□ -0.21
LDLR-212ENST00000560467 STARD7Q9NQZ5 370 aa13.72□□□□□ -0.21
LDLR-212ENST00000560467 ZHX1Q9UKY1 873 aaPredicted RBP13.72□□□□□ -0.21
LDLR-212ENST00000560467 RIPK3Q9Y572 518 aa13.72□□□□□ -0.21
LDLR-212ENST00000560467 CCDC69A6NI79 296 aa13.71□□□□□ -0.21
LDLR-212ENST00000560467 SNAI1O95863 264 aaPredicted RBP13.71□□□□□ -0.21
LDLR-212ENST00000560467 NDUFB10O96000 172 aa13.71□□□□□ -0.21
LDLR-212ENST00000560467 CPA1P15085 419 aa13.71□□□□□ -0.21
LDLR-212ENST00000560467 COPB2P35606 906 aa13.71□□□□□ -0.21
LDLR-212ENST00000560467 AK2P54819 239 aa13.71□□□□□ -0.21
LDLR-212ENST00000560467 GRIN2CQ14957 1233 aa13.71□□□□□ -0.21
LDLR-212ENST00000560467 STOX1Q6ZVD7 989 aa13.71□□□□□ -0.21
LDLR-212ENST00000560467 ANKRD33Q7Z3H0 272 aa13.71□□□□□ -0.21
LDLR-212ENST00000560467 KLHDC9Q8NEP7 349 aa13.71□□□□□ -0.21
LDLR-212ENST00000560467 TEX13BQ9BXU2 312 aa13.71□□□□□ -0.21
LDLR-212ENST00000560467 ZSWIM5Q9P217 1185 aa13.71□□□□□ -0.21
LDLR-212ENST00000560467 TMEM265A0A087WTH1 108 aa13.7□□□□□ -0.22
LDLR-212ENST00000560467 DCDC2CA8MYV0 355 aa13.7□□□□□ -0.22
LDLR-212ENST00000560467 ADCY6O43306 1168 aa13.7□□□□□ -0.22
LDLR-212ENST00000560467 PRDM1O75626 825 aa13.7□□□□□ -0.22
LDLR-212ENST00000560467 FGRP09769 529 aa13.7□□□□□ -0.22
LDLR-212ENST00000560467 RASA1P20936 1047 aa13.7□□□□□ -0.22
LDLR-212ENST00000560467 DNAJB2P25686 324 aa13.7□□□□□ -0.22
LDLR-212ENST00000560467 SLC4A3P48751 1232 aa13.7□□□□□ -0.22
LDLR-212ENST00000560467 TFAP4Q01664 338 aa13.7□□□□□ -0.22
LDLR-212ENST00000560467 EXOSC10Q01780 885 aaKnown RBP13.7□□□□□ -0.22
LDLR-212ENST00000560467 WTAPQ15007 396 aa13.7□□□□□ -0.22
LDLR-212ENST00000560467 KCNA10Q16322 511 aa13.7□□□□□ -0.22
LDLR-212ENST00000560467 CCSAPQ6IQ19 270 aaPredicted RBP13.7□□□□□ -0.22
LDLR-212ENST00000560467 CPLX2Q6PUV4 134 aaKnown RBP13.7□□□□□ -0.22
LDLR-212ENST00000560467 NOL8Q76FK4 1167 aaKnown RBP13.7□□□□□ -0.22
LDLR-212ENST00000560467 MB21D2Q8IYB1 491 aaPredicted RBP13.7□□□□□ -0.22
LDLR-212ENST00000560467 BRF1Q92994 677 aa13.7□□□□□ -0.22
LDLR-212ENST00000560467 TOX2Q96NM4 488 aa13.7□□□□□ -0.22
LDLR-212ENST00000560467 TSEN34Q9BSV6 310 aaKnown RBP13.7□□□□□ -0.22
LDLR-212ENST00000560467 TBX21Q9UL17 535 aa13.7□□□□□ -0.22
LDLR-212ENST00000560467 FAM184BQ9ULE4 1060 aa13.7□□□□□ -0.22
LDLR-212ENST00000560467 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.7□□□□□ -0.22
LDLR-212ENST00000560467 SYNGAP1Q96PV0 1343 aa13.69□□□□□ -0.22
LDLR-212ENST00000560467 DNAJC25-GNG10A0A024R161 153 aa13.69□□□□□ -0.22
LDLR-212ENST00000560467 LIFRP42702 1097 aa13.69□□□□□ -0.22
LDLR-212ENST00000560467 CHST3Q7LGC8 479 aa13.69□□□□□ -0.22
LDLR-212ENST00000560467 CATIPQ7Z7H3 387 aa13.69□□□□□ -0.22
LDLR-212ENST00000560467 CPXCR1Q8N123 301 aa13.69□□□□□ -0.22
LDLR-212ENST00000560467 FBXL16Q8N461 479 aa13.69□□□□□ -0.22
LDLR-212ENST00000560467 MSL3Q8N5Y2 521 aaKnown RBP13.69□□□□□ -0.22
LDLR-212ENST00000560467 NUP133Q8WUM0 1156 aa13.69□□□□□ -0.22
LDLR-212ENST00000560467 DDX11Q96FC9 970 aa13.69□□□□□ -0.22
LDLR-212ENST00000560467 FGD4Q96M96 766 aa13.69□□□□□ -0.22
LDLR-212ENST00000560467 TTC14Q96N46 770 aa13.69□□□□□ -0.22
LDLR-212ENST00000560467 ZSCAN10Q96SZ4 725 aaPredicted RBP13.69□□□□□ -0.22
LDLR-212ENST00000560467 SLKQ9H2G2 1235 aaPredicted RBP13.69□□□□□ -0.22
LDLR-212ENST00000560467 SLC12A7Q9Y666 1083 aa13.69□□□□□ -0.22
LDLR-212ENST00000560467 TAF6LQ9Y6J9 622 aa13.69□□□□□ -0.22
LDLR-212ENST00000560467 NEDD4P46934 1319 aa13.68□□□□□ -0.22
LDLR-212ENST00000560467 CCDC196A0A1B0GTZ2 297 aa13.68□□□□□ -0.22
LDLR-212ENST00000560467 MOXD2PA6NHM9 499 aa13.68□□□□□ -0.22
LDLR-212ENST00000560467 F5H6K3 240 aa13.68□□□□□ -0.22
LDLR-212ENST00000560467 TIMP1P01033 207 aa13.68□□□□□ -0.22
LDLR-212ENST00000560467 CALM1P0DP23 149 aa13.68□□□□□ -0.22
LDLR-212ENST00000560467 CALM2P0DP24 149 aa13.68□□□□□ -0.22
LDLR-212ENST00000560467 CALM3P0DP25 149 aa13.68□□□□□ -0.22
LDLR-212ENST00000560467 KLRC3Q07444 240 aa13.68□□□□□ -0.22
LDLR-212ENST00000560467 IFIT1BQ5T764 474 aaKnown RBP13.68□□□□□ -0.22
LDLR-212ENST00000560467 MAMDC4Q6UXC1 1216 aa13.68□□□□□ -0.22
LDLR-212ENST00000560467 TIFAQ96CG3 184 aa13.68□□□□□ -0.22
LDLR-212ENST00000560467 TCEANC2Q96MN5 208 aa13.68□□□□□ -0.22
LDLR-212ENST00000560467 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.68□□□□□ -0.224e-7■■□□□ 12.3
LDLR-212ENST00000560467 RAVER2Q9HCJ3 691 aaKnown RBP13.68□□□□□ -0.22
LDLR-212ENST00000560467 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms