RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 GNAQP50148 359 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 NAPAP54920 295 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 MCM6Q14566 821 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 PDXDC2PQ6P474 469 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 SLF2Q8IX21 1173 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 ANKS1AQ92625 1134 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 DBNDD1Q9H9R9 158 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 LIMA1Q9UHB6 759 aaKnown RBP14.06□□□□□ -0.16
RNF4-222ENST00000541204 PALM3A6NDB9 673 aaPredicted RBP14.06□□□□□ -0.16
RNF4-222ENST00000541204 STXBP3O00186 592 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 RAD21O60216 631 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 RHOXF2BP0C7M4 288 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 FECHP22830 423 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 COPB1P53618 953 aaKnown RBP14.06□□□□□ -0.16
RNF4-222ENST00000541204 ATP2B2Q01814 1243 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 BEND6Q5SZJ8 279 aaPredicted RBP14.06□□□□□ -0.16
RNF4-222ENST00000541204 TMTC1Q8IUR5 882 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 TXLNBQ8N3L3 684 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 SNED1Q8TER0 1413 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 TRERF1Q96PN7 1200 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 RHOXF2Q9BQY4 288 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 TMEM60Q9H2L4 133 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 SUGCTQ9HAC7 445 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 TCP11L1Q9NUJ3 509 aa14.06□□□□□ -0.16
RNF4-222ENST00000541204 CACNB3P54284 484 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 PAK1Q13153 545 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 TCP11X2Q5H9J9 407 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 NEDD1Q8NHV4 660 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 NELFBQ8WX92 580 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 PIGSQ96S52 555 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 SLF1Q9BQI6 1058 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 USP40Q9NVE5 1235 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 BARHL2Q9NY43 387 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 RWDD2AQ9UIY3 292 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 LRRC10BA6NIK2 292 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 KCNJ18B7U540 433 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 KCNJ12Q14500 433 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 CCDC178Q5BJE1 867 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 NAPGQ99747 312 aaPredicted RBP14.05□□□□□ -0.16
RNF4-222ENST00000541204 ADAM21Q9UKJ8 722 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 GDAQ9Y2T3 454 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 PCDHAC2Q9Y5I4 1007 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 DLEC1Q9Y238 1755 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 GAKO14976 1311 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 AKR1B1P15121 316 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 KRT9P35527 623 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 ARHGAP25P42331 645 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 IRX5P78411 483 aaPredicted RBP14.05□□□□□ -0.16
RNF4-222ENST00000541204 GPS2Q13227 327 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 CYP26C1Q6V0L0 522 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 NLGN1Q8N2Q7 840 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 MSANTD4Q8NCY6 345 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 HNRNPLLQ8WVV9 542 aaKnown RBP14.05□□□□□ -0.16
RNF4-222ENST00000541204 COA1Q9GZY4 146 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 PDE11AQ9HCR9 933 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 ABCB6Q9NP58 842 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 RAB21Q9UL25 225 aa14.05□□□□□ -0.16
RNF4-222ENST00000541204 KLRG2A4D1S0 409 aaPredicted RBP14.04□□□□□ -0.16
RNF4-222ENST00000541204 MPHOSPH10O00566 681 aaKnown RBP14.04□□□□□ -0.16
RNF4-222ENST00000541204 GTPBP6O43824 516 aaPredicted RBP14.04□□□□□ -0.16
RNF4-222ENST00000541204 TRAPPC10P48553 1259 aa14.04□□□□□ -0.16
RNF4-222ENST00000541204 LETM2Q2VYF4 491 aa14.04□□□□□ -0.16
RNF4-222ENST00000541204 CHP1Q99653 195 aa14.04□□□□□ -0.16
RNF4-222ENST00000541204 GPCPD1Q9NPB8 672 aa14.04□□□□□ -0.16
RNF4-222ENST00000541204 SMCO2A6NFE2 343 aa14.04□□□□□ -0.16
RNF4-222ENST00000541204 FAM196BA6NMK8 535 aa14.04□□□□□ -0.16
RNF4-222ENST00000541204 TCP10Q12799 353 aa14.04□□□□□ -0.16
RNF4-222ENST00000541204 ZNF658Q5TYW1 1059 aaPredicted RBP14.04□□□□□ -0.16
RNF4-222ENST00000541204 C4orf32Q8N8J7 132 aa14.04□□□□□ -0.16
RNF4-222ENST00000541204 FAM163AQ96GL9 167 aaPredicted RBP14.04□□□□□ -0.16
RNF4-222ENST00000541204 SH3GLB2Q9NR46 395 aa14.04□□□□□ -0.16
RNF4-222ENST00000541204 BIN2Q9UBW5 565 aaPredicted RBP14.04□□□□□ -0.16
RNF4-222ENST00000541204 SEC63Q9UGP8 760 aaKnown RBP14.04□□□□□ -0.16
RNF4-222ENST00000541204 POTEB2H3BUK9 544 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 RPN1P04843 607 aaKnown RBP14.03□□□□□ -0.16
RNF4-222ENST00000541204 NPR1P16066 1061 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 PRCPP42785 496 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 VSNL1P62760 191 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 UBXN1Q04323 297 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 TUBB2AQ13885 445 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 DTHD1Q6ZMT9 781 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 HDXQ7Z353 690 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 KIAA0825Q8IV33 1275 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 ANKRD20A12PQ8NF67 263 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 CCDC148Q8NFR7 591 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 RRP36Q96EU6 259 aaKnown RBP14.03□□□□□ -0.16
RNF4-222ENST00000541204 TUBB2BQ9BVA1 445 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 TMX4Q9H1E5 349 aaPredicted RBP14.03□□□□□ -0.16
RNF4-222ENST00000541204 TRIM10Q9UDY6 481 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 NAV1Q8NEY1 1877 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 CTAGE15A4D2H0 777 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 TRIM49BA6NDI0 452 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 CCNT1O60563 726 aaKnown RBP14.03□□□□□ -0.16
RNF4-222ENST00000541204 CTAGE8P0CG41 777 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 STAT6P42226 847 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 RBM5P52756 815 aaKnown RBP eCLIP14.03□□□□□ -0.16
RNF4-222ENST00000541204 SPAG1Q07617 926 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 NFIAQ12857 509 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 NCAPH2Q6IBW4 605 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 CTAGE6Q86UF2 777 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms