RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 CCSAPQ6IQ19 270 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-204ENST00000529288 CWC27Q6UX04 472 aaKnown RBP15.31■□□□□ 0.04
CPSF1-204ENST00000529288 RNPC3Q96LT9 517 aaKnown RBP15.31■□□□□ 0.04
CPSF1-204ENST00000529288 ZKSCAN3Q9BRR0 538 aa15.31■□□□□ 0.04
CPSF1-204ENST00000529288 AP5M1Q9H0R1 490 aa15.31■□□□□ 0.04
CPSF1-204ENST00000529288 DIAPH3Q9NSV4 1193 aa15.31■□□□□ 0.04
CPSF1-204ENST00000529288 CYP39A1Q9NYL5 469 aa15.31■□□□□ 0.04
CPSF1-204ENST00000529288 MYH4Q9Y623 1939 aa15.31■□□□□ 0.04
CPSF1-204ENST00000529288 PTPDC1A2A3K4 754 aa15.3■□□□□ 0.04
CPSF1-204ENST00000529288 ZNF213O14771 459 aa15.3■□□□□ 0.04
CPSF1-204ENST00000529288 ICAM1P05362 532 aa15.3■□□□□ 0.04
CPSF1-204ENST00000529288 FGRP09769 529 aa15.3■□□□□ 0.04
CPSF1-204ENST00000529288 PTGS1P23219 599 aa15.3■□□□□ 0.04
CPSF1-204ENST00000529288 FPGSQ05932 587 aa15.3■□□□□ 0.04
CPSF1-204ENST00000529288 AAMPQ13685 434 aa15.3■□□□□ 0.04
CPSF1-204ENST00000529288 BAATQ14032 418 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-204ENST00000529288 AKNAD1Q5T1N1 836 aa15.3■□□□□ 0.04
CPSF1-204ENST00000529288 ANKRD33Q7Z3H0 272 aa15.3■□□□□ 0.04
CPSF1-204ENST00000529288 TBC1D10CQ8IV04 446 aa15.3■□□□□ 0.04
CPSF1-204ENST00000529288 PLEKHM2Q8IWE5 1019 aa15.3■□□□□ 0.04
CPSF1-204ENST00000529288 FBXO16Q8IX29 292 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-204ENST00000529288 SMC5Q8IY18 1101 aa15.3■□□□□ 0.04
CPSF1-204ENST00000529288 TOX2Q96NM4 488 aa15.3■□□□□ 0.04
CPSF1-204ENST00000529288 KATNBL1Q9H079 304 aa15.3■□□□□ 0.04
CPSF1-204ENST00000529288 RANBP17Q9H2T7 1088 aaKnown RBP15.3■□□□□ 0.04
CPSF1-204ENST00000529288 PDGFCQ9NRA1 345 aa15.3■□□□□ 0.04
CPSF1-204ENST00000529288 PLXNA1Q9UIW2 1896 aa15.29■□□□□ 0.04
CPSF1-204ENST00000529288 ELP1O95163 1332 aa15.29■□□□□ 0.04
CPSF1-204ENST00000529288 A0A0U1RQG5 324 aaPredicted RBP15.29■□□□□ 0.04
CPSF1-204ENST00000529288 ARVCFO00192 962 aa15.29■□□□□ 0.04
CPSF1-204ENST00000529288 DLL1O00548 723 aa15.29■□□□□ 0.04
CPSF1-204ENST00000529288 CALML3P27482 149 aa15.29■□□□□ 0.04
CPSF1-204ENST00000529288 CST5P28325 142 aaPredicted RBP15.29■□□□□ 0.04
CPSF1-204ENST00000529288 NOVP48745 357 aa15.29■□□□□ 0.04
CPSF1-204ENST00000529288 NUCB1Q02818 461 aa15.29■□□□□ 0.04
CPSF1-204ENST00000529288 CXCL17Q6UXB2 119 aa15.29■□□□□ 0.04
CPSF1-204ENST00000529288 KIAA1211Q6ZU35 1233 aa15.29■□□□□ 0.04
CPSF1-204ENST00000529288 TLK2Q86UE8 772 aa15.29■□□□□ 0.04
CPSF1-204ENST00000529288 PPP1R12CQ9BZL4 782 aa15.29■□□□□ 0.04
CPSF1-204ENST00000529288 UPF3AQ9H1J1 476 aaKnown RBP15.29■□□□□ 0.04
CPSF1-204ENST00000529288 RNF41Q9H4P4 317 aaPredicted RBP15.29■□□□□ 0.04
CPSF1-204ENST00000529288 TCP11L1Q9NUJ3 509 aa15.29■□□□□ 0.04
CPSF1-204ENST00000529288 SMCHD1A6NHR9 2005 aa15.28■□□□□ 0.04
CPSF1-204ENST00000529288 MROH7Q68CQ1 1323 aa15.28■□□□□ 0.04
CPSF1-204ENST00000529288 NFIBO00712 420 aa15.28■□□□□ 0.04
CPSF1-204ENST00000529288 TLR3O15455 904 aaKnown RBP15.28■□□□□ 0.04
CPSF1-204ENST00000529288 TIMP1P01033 207 aa15.28■□□□□ 0.04
CPSF1-204ENST00000529288 GOLGA8HP0CJ92 632 aa15.28■□□□□ 0.04
CPSF1-204ENST00000529288 PDHBP11177 359 aa15.28■□□□□ 0.04
CPSF1-204ENST00000529288 SMPD1P17405 629 aa15.28■□□□□ 0.04
CPSF1-204ENST00000529288 TMEM63BQ5T3F8 832 aa15.28■□□□□ 0.04
CPSF1-204ENST00000529288 FAM109BQ6ICB4 259 aaPredicted RBP15.28■□□□□ 0.04
CPSF1-204ENST00000529288 ESR2Q92731 530 aa15.28■□□□□ 0.04
CPSF1-204ENST00000529288 GUCD1Q96NT3 240 aa15.28■□□□□ 0.04
CPSF1-204ENST00000529288 ASTN1O14525 1302 aa15.27■□□□□ 0.04
CPSF1-204ENST00000529288 NEDD4P46934 1319 aa15.27■□□□□ 0.04
CPSF1-204ENST00000529288 ZEB2O60315 1214 aa15.27■□□□□ 0.04
CPSF1-204ENST00000529288 CDK7P50613 346 aa15.27■□□□□ 0.04
CPSF1-204ENST00000529288 FSCN1Q16658 493 aaKnown RBP15.27■□□□□ 0.04
CPSF1-204ENST00000529288 IQSEC1Q6DN90 963 aa15.27■□□□□ 0.04
CPSF1-204ENST00000529288 BTNL9Q6UXG8 535 aa15.27■□□□□ 0.04
CPSF1-204ENST00000529288 TICAM2Q86XR7 235 aa15.27■□□□□ 0.04
CPSF1-204ENST00000529288 TTC14Q96N46 770 aa15.27■□□□□ 0.04
CPSF1-204ENST00000529288 UBA5Q9GZZ9 404 aa15.27■□□□□ 0.04
CPSF1-204ENST00000529288 SEMA6BQ9H3T3 888 aa15.27■□□□□ 0.04
CPSF1-204ENST00000529288 ADD3Q9UEY8 706 aaKnown RBP15.27■□□□□ 0.04
CPSF1-204ENST00000529288 GNEQ9Y223 722 aaKnown RBP15.27■□□□□ 0.04
CPSF1-204ENST00000529288 ZMYM6O95789 1325 aa15.26■□□□□ 0.03
CPSF1-204ENST00000529288 CTAGE5O15320 804 aa15.26■□□□□ 0.03
CPSF1-204ENST00000529288 PCP11498 1178 aaKnown RBP15.26■□□□□ 0.03
CPSF1-204ENST00000529288 ALDH5A1P51649 535 aaPredicted RBP15.26■□□□□ 0.03
CPSF1-204ENST00000529288 SMAD3P84022 425 aaKnown RBP15.26■□□□□ 0.03
CPSF1-204ENST00000529288 ZNF543Q08ER8 600 aa15.26■□□□□ 0.03
CPSF1-204ENST00000529288 USH1GQ495M9 461 aa15.26■□□□□ 0.03
CPSF1-204ENST00000529288 TAPT1Q6NXT6 567 aa15.26■□□□□ 0.03
CPSF1-204ENST00000529288 SLC30A10Q6XR72 485 aa15.26■□□□□ 0.03
CPSF1-204ENST00000529288 RNF207Q6ZRF8 634 aa15.26■□□□□ 0.03
CPSF1-204ENST00000529288 CDX2Q99626 313 aaPredicted RBP15.26■□□□□ 0.03
CPSF1-204ENST00000529288 CPVLQ9H3G5 476 aa15.26■□□□□ 0.03
CPSF1-204ENST00000529288 KAT14Q9H8E8 782 aa15.26■□□□□ 0.03
CPSF1-204ENST00000529288 VTA1Q9NP79 307 aa15.26■□□□□ 0.03
CPSF1-204ENST00000529288 TBX21Q9UL17 535 aa15.26■□□□□ 0.03
CPSF1-204ENST00000529288 HIP1O00291 1037 aa15.25■□□□□ 0.03
CPSF1-204ENST00000529288 KDM4AO75164 1064 aa15.25■□□□□ 0.03
CPSF1-204ENST00000529288 ACRP10323 421 aa15.25■□□□□ 0.03
CPSF1-204ENST00000529288 PSMC6P62333 389 aa15.25■□□□□ 0.03
CPSF1-204ENST00000529288 ITGA7Q13683 1181 aa15.25■□□□□ 0.03
CPSF1-204ENST00000529288 MFSD5Q6N075 450 aa15.25■□□□□ 0.03
CPSF1-204ENST00000529288 IQCA1Q86XH1 822 aa15.25■□□□□ 0.03
CPSF1-204ENST00000529288 TMEM199Q8N511 208 aa15.25■□□□□ 0.03
CPSF1-204ENST00000529288 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.25■□□□□ 0.031e-8■□□□□ 9.4
CPSF1-204ENST00000529288 WDR11Q9BZH6 1224 aa15.25■□□□□ 0.03
CPSF1-204ENST00000529288 OSBPL3Q9H4L5 887 aa15.25■□□□□ 0.03
CPSF1-204ENST00000529288 LTBP2Q14767 1821 aa15.24■□□□□ 0.03
CPSF1-204ENST00000529288 B4E1Z4 1266 aa15.24■□□□□ 0.03
CPSF1-204ENST00000529288 DHX16O60231 1041 aaKnown RBP15.24■□□□□ 0.03
CPSF1-204ENST00000529288 CABYRO75952 493 aa15.24■□□□□ 0.03
CPSF1-204ENST00000529288 MYL3P08590 195 aa15.24■□□□□ 0.03
CPSF1-204ENST00000529288 CSF2RAP15509 400 aa15.24■□□□□ 0.03
CPSF1-204ENST00000529288 CYP2C18P33260 490 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms