RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 KMT5BQ4FZB7 885 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 TRIM65Q6PJ69 517 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 SPATA20Q8TB22 786 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 PIGSQ96S52 555 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 GPCPD1Q9NPB8 672 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 TAB2Q9NYJ8 693 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 SERPINB13Q9UIV8 391 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 TFR2Q9UP52 801 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 PPP2R2CQ9Y2T4 447 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 ZNF646O15015 1829 aaPredicted RBP10.69□□□□□ -0.7
CUX1-206ENST00000437600 MAST2Q6P0Q8 1798 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 DDTLA6NHG4 134 aaPredicted RBP10.69□□□□□ -0.7
CUX1-206ENST00000437600 CCNT1O60563 726 aaKnown RBP10.69□□□□□ -0.7
CUX1-206ENST00000437600 YBX3P16989 372 aaKnown RBP eCLIP10.69□□□□□ -0.73e-6■■■□□ 15.7
CUX1-206ENST00000437600 SLC16A2P36021 539 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 TECP42680 631 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 GNG11P61952 73 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 IGSF22Q8N9C0 903 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 IQUBQ8NA54 791 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 TMEM51Q9NW97 253 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 KCNG1Q9UIX4 513 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 GJA3Q9Y6H8 435 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 CLRN2A0PK11 232 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 EGFRP00533 1210 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 PRCPP42785 496 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 NAPAP54920 295 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 RBM26Q5T8P6 1007 aaKnown RBP10.69□□□□□ -0.7
CUX1-206ENST00000437600 SH3RF1Q7Z6J0 888 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 C4orf32Q8N8J7 132 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 NEDD1Q8NHV4 660 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 PSMD1Q99460 953 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 PCDHA4Q9UN74 947 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 NAV1Q8NEY1 1877 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 LAMB1P07942 1786 aa10.69□□□□□ -0.7
CUX1-206ENST00000437600 SMCO2A6NFE2 343 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 STAT6P42226 847 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 FXR1P51114 621 aaKnown RBP eCLIP10.68□□□□□ -0.7
CUX1-206ENST00000437600 ETF1P62495 437 aaKnown RBP10.68□□□□□ -0.7
CUX1-206ENST00000437600 CXCL9Q07325 125 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 E2F4Q16254 413 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 KANK3Q6NY19 840 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 FBXO38Q6PIJ6 1188 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 APTXQ7Z2E3 356 aaKnown RBP10.68□□□□□ -0.7
CUX1-206ENST00000437600 NIM1KQ8IY84 436 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 FERMT2Q96AC1 680 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 MYH1P12882 1939 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 SYNRGQ9UMZ2 1314 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 ROBO3Q96MS0 1386 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 N4BP3O15049 544 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 NRDCO43847 1150 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 KIF20AO95235 890 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 UBA7P41226 1012 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 GRM4Q14833 912 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 SPATA1Q5VX52 437 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 CC2D2BQ6DHV5 1058 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 PDXDC2PQ6P474 469 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 DTHD1Q6ZMT9 781 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 CARD6Q9BX69 1037 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 MRPL44Q9H9J2 332 aaKnown RBP10.68□□□□□ -0.7
CUX1-206ENST00000437600 ZNF287Q9HBT7 754 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 GDF11O95390 407 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 SLU7O95391 586 aaKnown RBP10.68□□□□□ -0.7
CUX1-206ENST00000437600 PARP1P09874 1014 aaKnown RBP10.68□□□□□ -0.7
CUX1-206ENST00000437600 TXKP42681 527 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 NAALADL2Q58DX5 795 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 STRIP1Q5VSL9 837 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 TTBK2Q6IQ55 1244 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 PRMT6Q96LA8 375 aaPredicted RBP10.68□□□□□ -0.7
CUX1-206ENST00000437600 DNAJC18Q9H819 358 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 ST7Q9NRC1 585 aa10.68□□□□□ -0.7
CUX1-206ENST00000437600 DDX60LQ5H9U9 1706 aaKnown RBP10.67□□□□□ -0.7
CUX1-206ENST00000437600 SHMT1P34896 483 aa10.67□□□□□ -0.7
CUX1-206ENST00000437600 RAD9BQ6WBX8 426 aa10.67□□□□□ -0.7
CUX1-206ENST00000437600 KCTD1Q719H9 257 aa10.67□□□□□ -0.7
CUX1-206ENST00000437600 SUPT20HQ8NEM7 779 aa10.67□□□□□ -0.7
CUX1-206ENST00000437600 NELFBQ8WX92 580 aa10.67□□□□□ -0.7
CUX1-206ENST00000437600 JDP2Q8WYK2 163 aa10.67□□□□□ -0.7
CUX1-206ENST00000437600 STXBP3O00186 592 aa10.67□□□□□ -0.7
CUX1-206ENST00000437600 RPN1P04843 607 aaKnown RBP10.67□□□□□ -0.7
CUX1-206ENST00000437600 SNAP25P60880 206 aa10.67□□□□□ -0.7
CUX1-206ENST00000437600 GABPAQ06546 454 aa10.67□□□□□ -0.7
CUX1-206ENST00000437600 TBX2Q13207 712 aaPredicted RBP10.67□□□□□ -0.7
CUX1-206ENST00000437600 KRT31Q15323 416 aa10.67□□□□□ -0.7
CUX1-206ENST00000437600 GSDMAQ96QA5 445 aa10.67□□□□□ -0.7
CUX1-206ENST00000437600 MTMR4Q9NYA4 1195 aa10.67□□□□□ -0.7
CUX1-206ENST00000437600 ADD3Q9UEY8 706 aaKnown RBP10.67□□□□□ -0.7
CUX1-206ENST00000437600 FAM198AQ9UFP1 575 aa10.67□□□□□ -0.7
CUX1-206ENST00000437600 PALM3A6NDB9 673 aaPredicted RBP10.66□□□□□ -0.7
CUX1-206ENST00000437600 TCP10L2B9ZVM9 353 aa10.66□□□□□ -0.7
CUX1-206ENST00000437600 SH3BP5LQ7L8J4 393 aa10.66□□□□□ -0.7
CUX1-206ENST00000437600 CDAN1Q8IWY9 1227 aa10.66□□□□□ -0.7
CUX1-206ENST00000437600 ACRBPQ8NEB7 543 aa10.66□□□□□ -0.7
CUX1-206ENST00000437600 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.66□□□□□ -0.7
CUX1-206ENST00000437600 DACH1Q9UI36 760 aa10.66□□□□□ -0.7
CUX1-206ENST00000437600 ZNRF3Q9ULT6 936 aa10.66□□□□□ -0.7
CUX1-206ENST00000437600 A0A1B0GTH6 734 aa10.66□□□□□ -0.7
CUX1-206ENST00000437600 PDHBP11177 359 aa10.66□□□□□ -0.7
CUX1-206ENST00000437600 FCER1AP12319 257 aa10.66□□□□□ -0.7
CUX1-206ENST00000437600 TAL1P17542 331 aaPredicted RBP10.66□□□□□ -0.7
CUX1-206ENST00000437600 ERCC5P28715 1186 aaPredicted RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms