RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SH3GL2Q99962 352 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 ODF2LQ9ULJ1 636 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 CAMTA1Q9Y6Y1 1673 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 COL16A1Q07092 1604 aaPredicted RBP15.98■□□□□ 0.15
SDC1-201ENST00000254351 EPHB6O15197 1021 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 FTCDO95954 541 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 CDC25CP30307 473 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 HAUS3Q68CZ6 603 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 AMOTL1Q8IY63 956 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 SALL4Q9UJQ4 1053 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 COL22A1Q8NFW1 1626 aaPredicted RBP15.98■□□□□ 0.15
SDC1-201ENST00000254351 EIF4E1BA6NMX2 242 aaKnown RBP15.98■□□□□ 0.15
SDC1-201ENST00000254351 NUTM2BA6NNL0 878 aaPredicted RBP15.98■□□□□ 0.15
SDC1-201ENST00000254351 LGALS16A8MUM7 142 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 NUTM2EB1AL46 878 aaPredicted RBP15.98■□□□□ 0.15
SDC1-201ENST00000254351 NR1D1P20393 614 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 FNTAP49354 379 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 HLFQ16534 295 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 ZNF658Q5TYW1 1059 aaPredicted RBP15.98■□□□□ 0.15
SDC1-201ENST00000254351 IQCEQ6IPM2 695 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 CHADLQ6NUI6 762 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 CCDC155Q8N6L0 562 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 KRT12Q99456 494 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 NOC4LQ9BVI4 516 aaKnown RBP15.98■□□□□ 0.15
SDC1-201ENST00000254351 PRDM11Q9NQV5 511 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 HAUS2Q9NVX0 235 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 CAPN11Q9UMQ6 739 aa15.98■□□□□ 0.15
SDC1-201ENST00000254351 GSG1L2A8MUP6 293 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 TACC1O75410 805 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 HEXIM1O94992 359 aaKnown RBP15.97■□□□□ 0.15
SDC1-201ENST00000254351 GFPT1Q06210 699 aaPredicted RBP15.97■□□□□ 0.15
SDC1-201ENST00000254351 TRIM14Q14142 442 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 DNAJC7Q99615 494 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 LRRC10BA6NIK2 292 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 CIAO1O76071 339 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 PAFAH1B1P43034 410 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 VAV2P52735 878 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 RPAINQ86UA6 219 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 EHBP1Q8NDI1 1231 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 CERKQ8TCT0 537 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 GOLPH3Q9H4A6 298 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 DONSONQ9NYP3 566 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 MYH10P35580 1976 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 EIF4A3P38919 411 aaKnown RBP15.97■□□□□ 0.15
SDC1-201ENST00000254351 EPHB4P54760 987 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 PKN1Q16512 942 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 TDRD12Q587J7 1177 aaKnown RBP15.97■□□□□ 0.15
SDC1-201ENST00000254351 GPKOWQ92917 476 aaPredicted RBP eCLIP15.97■□□□□ 0.15
SDC1-201ENST00000254351 KANSL2Q9H9L4 492 aa15.97■□□□□ 0.15
SDC1-201ENST00000254351 CCDC196A0A1B0GTZ2 297 aa15.96■□□□□ 0.15
SDC1-201ENST00000254351 RASSF10A6NK89 507 aa15.96■□□□□ 0.15
SDC1-201ENST00000254351 PDXDC2PQ6P474 469 aa15.96■□□□□ 0.15
SDC1-201ENST00000254351 RRAGAQ7L523 313 aa15.96■□□□□ 0.15
SDC1-201ENST00000254351 NLRP14Q86W24 1093 aa15.96■□□□□ 0.15
SDC1-201ENST00000254351 DDX42Q86XP3 938 aaKnown RBP eCLIP15.96■□□□□ 0.15
SDC1-201ENST00000254351 TTLL11Q8NHH1 800 aa15.96■□□□□ 0.15
SDC1-201ENST00000254351 SLC40A1Q9NP59 571 aa15.96■□□□□ 0.15
SDC1-201ENST00000254351 EXOC1Q9NV70 894 aa15.96■□□□□ 0.15
SDC1-201ENST00000254351 PCDHA13Q9Y5I0 950 aa15.96■□□□□ 0.15
SDC1-201ENST00000254351 LMO7Q8WWI1 1683 aa15.96■□□□□ 0.15
SDC1-201ENST00000254351 SEMA3EO15041 775 aa15.96■□□□□ 0.14
SDC1-201ENST00000254351 FCER1AP12319 257 aa15.96■□□□□ 0.14
SDC1-201ENST00000254351 FECHP22830 423 aa15.96■□□□□ 0.14
SDC1-201ENST00000254351 ELOA2Q8IYF1 753 aaPredicted RBP15.96■□□□□ 0.14
SDC1-201ENST00000254351 KRT23Q9C075 422 aa15.96■□□□□ 0.14
SDC1-201ENST00000254351 NLRC4Q9NPP4 1024 aa15.96■□□□□ 0.14
SDC1-201ENST00000254351 LRP2BPQ9P2M1 347 aa15.96■□□□□ 0.14
SDC1-201ENST00000254351 A0A0G2JS52 829 aa15.95■□□□□ 0.14
SDC1-201ENST00000254351 GTPBP6O43824 516 aaPredicted RBP15.95■□□□□ 0.14
SDC1-201ENST00000254351 TICAM2Q86XR7 235 aa15.95■□□□□ 0.14
SDC1-201ENST00000254351 RPGRIP1Q96KN7 1286 aa15.95■□□□□ 0.14
SDC1-201ENST00000254351 TANGO6Q9C0B7 1094 aa15.95■□□□□ 0.14
SDC1-201ENST00000254351 WDR19Q8NEZ3 1342 aa15.95■□□□□ 0.14
SDC1-201ENST00000254351 USO1O60763 962 aaKnown RBP15.95■□□□□ 0.14
SDC1-201ENST00000254351 ELF1P32519 619 aa15.95■□□□□ 0.14
SDC1-201ENST00000254351 NAA25Q14CX7 972 aa15.95■□□□□ 0.14
SDC1-201ENST00000254351 CCDC121Q6ZUS5 278 aa15.95■□□□□ 0.14
SDC1-201ENST00000254351 MYCBPAPQ8TBZ2 947 aa15.95■□□□□ 0.14
SDC1-201ENST00000254351 DCAF5Q96JK2 942 aa15.95■□□□□ 0.14
SDC1-201ENST00000254351 CNOT6LQ96LI5 555 aaKnown RBP15.95■□□□□ 0.14
SDC1-201ENST00000254351 STK36Q9NRP7 1315 aa15.95■□□□□ 0.14
SDC1-201ENST00000254351 MYH13Q9UKX3 1938 aa15.95■□□□□ 0.14
SDC1-201ENST00000254351 H7C1D1 291 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 PPP1R37O75864 691 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 IFIT1BQ5T764 474 aaKnown RBP15.94■□□□□ 0.14
SDC1-201ENST00000254351 FERMT2Q96AC1 680 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 UIMC1Q96RL1 719 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 EPN3Q9H201 632 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 MMP14P50281 582 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 KIF11P52732 1056 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 RASGRF1Q13972 1273 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 QPCTQ16769 361 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 FAM47AQ5JRC9 791 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 IQCA1Q86XH1 822 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 ARHGAP20Q9P2F6 1191 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 PSMA7O14818 248 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 HGSO14964 777 aaPredicted RBP15.94■□□□□ 0.14
SDC1-201ENST00000254351 MAGEA1P43355 309 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 BCAMP50895 628 aa15.94■□□□□ 0.14
SDC1-201ENST00000254351 MAP3K12Q12852 859 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms