RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 RRP15Q9Y3B9 282 aaKnown RBP11.59□□□□□ -0.55
LIG1-220ENST00000601091 PEAK1Q9H792 1746 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 RIMS1Q86UR5 1692 aaKnown RBP11.59□□□□□ -0.55
LIG1-220ENST00000601091 TNS3Q68CZ2 1445 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 NPM3O75607 178 aaKnown RBP11.59□□□□□ -0.55
LIG1-220ENST00000601091 PYGLP06737 847 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 LDHBP07195 334 aaKnown RBP11.59□□□□□ -0.55
LIG1-220ENST00000601091 CSF1RP07333 972 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 CASP7P55210 303 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 ANTXR2P58335 489 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 PTGDRQ13258 359 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 ARMC2Q8NEN0 867 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 SYMPKQ92797 1274 aaKnown RBP11.59□□□□□ -0.55
LIG1-220ENST00000601091 UTP6Q9NYH9 597 aaKnown RBP11.59□□□□□ -0.55
LIG1-220ENST00000601091 TAB2Q9NYJ8 693 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 SYNPO2Q9UMS6 1093 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 JAG2Q9Y219 1238 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 STK36Q9NRP7 1315 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 KCNA2P16389 499 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 GNA11P29992 359 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 KIF5AQ12840 1032 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 USP4Q13107 963 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 TDRD12Q587J7 1177 aaKnown RBP11.58□□□□□ -0.56
LIG1-220ENST00000601091 HDXQ7Z353 690 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 GRAMD1CQ8IYS0 662 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 CCDC42Q96M95 316 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 ALS2CR12Q96Q35 445 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 UBR1Q8IWV7 1749 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 NEDD4P46934 1319 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 PCP11498 1178 aaKnown RBP11.58□□□□□ -0.56
LIG1-220ENST00000601091 MYCLP1P12525 358 aaPredicted RBP11.58□□□□□ -0.56
LIG1-220ENST00000601091 VCAM1P19320 739 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 FAM47AQ5JRC9 791 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 CCDC122Q5T0U0 273 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 ARMCX5Q6P1M9 558 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 RPGRQ92834 1020 aaKnown RBP11.58□□□□□ -0.56
LIG1-220ENST00000601091 PMM1Q92871 262 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 SNAP23O00161 211 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 CLCN6P51797 869 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 TBC1D8BQ0IIM8 1120 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 CCDC65Q8IXS2 484 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 NELFBQ8WX92 580 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.58□□□□□ -0.56
LIG1-220ENST00000601091 SAMSN1Q9NSI8 373 aaKnown RBP11.58□□□□□ -0.56
LIG1-220ENST00000601091 CACNA1FO60840 1977 aa11.58□□□□□ -0.56
LIG1-220ENST00000601091 NRXN3Q9Y4C0 1643 aa11.57□□□□□ -0.56
LIG1-220ENST00000601091 SWAP70Q9UH65 585 aa11.57□□□□□ -0.56
LIG1-220ENST00000601091 HPS5Q9UPZ3 1129 aa11.57□□□□□ -0.56
LIG1-220ENST00000601091 KDM6AO15550 1401 aaPredicted RBP11.57□□□□□ -0.56
LIG1-220ENST00000601091 UBN2Q6ZU65 1347 aa11.57□□□□□ -0.56
LIG1-220ENST00000601091 UBE4AQ14139 1066 aa11.57□□□□□ -0.56
LIG1-220ENST00000601091 ELOA2Q8IYF1 753 aaPredicted RBP11.57□□□□□ -0.56
LIG1-220ENST00000601091 STAG1Q8WVM7 1258 aa11.57□□□□□ -0.56
LIG1-220ENST00000601091 BLOC1S6Q9UL45 172 aa11.57□□□□□ -0.56
LIG1-220ENST00000601091 CPDO75976 1380 aa11.57□□□□□ -0.56
LIG1-220ENST00000601091 KRT38O76015 456 aa11.57□□□□□ -0.56
LIG1-220ENST00000601091 SCG2P13521 617 aa11.57□□□□□ -0.56
LIG1-220ENST00000601091 TFAP4Q01664 338 aa11.57□□□□□ -0.56
LIG1-220ENST00000601091 CCDC40Q4G0X9 1142 aa11.57□□□□□ -0.56
LIG1-220ENST00000601091 ZNF579Q8NAF0 562 aaKnown RBP11.57□□□□□ -0.56
LIG1-220ENST00000601091 PPM1EQ8WY54 764 aa11.57□□□□□ -0.56
LIG1-220ENST00000601091 TFCP2L1Q9NZI6 479 aa11.57□□□□□ -0.56
LIG1-220ENST00000601091 SUN2Q9UH99 717 aa11.57□□□□□ -0.56
LIG1-220ENST00000601091 ZNF189O75820 626 aaPredicted RBP11.56□□□□□ -0.56
LIG1-220ENST00000601091 RPS8P62241 208 aaKnown RBP11.56□□□□□ -0.56
LIG1-220ENST00000601091 LETM2Q2VYF4 491 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 E4F1Q66K89 784 aaPredicted RBP11.56□□□□□ -0.56
LIG1-220ENST00000601091 LMBRD2Q68DH5 695 aaPredicted RBP11.56□□□□□ -0.56
LIG1-220ENST00000601091 RRP36Q96EU6 259 aaKnown RBP11.56□□□□□ -0.56
LIG1-220ENST00000601091 SLF1Q9BQI6 1058 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 MMRN2Q9H8L6 949 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 TACC1O75410 805 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 DDAH1O94760 285 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 RFC4P35249 363 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 PPP1R2P41236 205 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 GJA8P48165 433 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 SUSD4Q5VX71 490 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 CSGALNACT2Q8N6G5 542 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 IGDCC4Q8TDY8 1250 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 HINFPQ9BQA5 517 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 FRMD3A2A2Y4 597 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 C6orf229H3BNL8 230 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 KCNJ6P48051 423 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 RASA3Q14644 834 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 TEKT1Q969V4 418 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 ZNF512BQ96KM6 892 aaPredicted RBP11.56□□□□□ -0.56
LIG1-220ENST00000601091 RABEP2Q9H5N1 569 aa11.56□□□□□ -0.56
LIG1-220ENST00000601091 LOC102724428A0A0B4J2F2 783 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 GSG1L2A8MUP6 293 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 GTPBP6O43824 516 aaPredicted RBP11.55□□□□□ -0.56
LIG1-220ENST00000601091 CRKLP46109 303 aaKnown RBP11.55□□□□□ -0.56
LIG1-220ENST00000601091 SIK1P57059 783 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 ST5P78524 1137 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 MMS22LQ6ZRQ5 1243 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 RETREG2Q8NC44 543 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 OR8K1Q8NGG5 319 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 RABGGTAQ92696 567 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 ARPP21Q9UBL0 812 aaPredicted RBP11.55□□□□□ -0.56
LIG1-220ENST00000601091 TUBE1Q9UJT0 475 aa11.55□□□□□ -0.56
LIG1-220ENST00000601091 MORC2Q9Y6X9 1032 aaPredicted RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms