RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 PRPF38AQ8NAV1 312 aaKnown RBP12.18□□□□□ -0.46
TRIM28-210ENST00000597618 FBXO40Q9UH90 709 aa12.18□□□□□ -0.46
TRIM28-210ENST00000597618 EXOC6BQ9Y2D4 811 aa12.18□□□□□ -0.46
TRIM28-210ENST00000597618 RIPK3Q9Y572 518 aa12.18□□□□□ -0.46
TRIM28-210ENST00000597618 CTDP1Q9Y5B0 961 aaPredicted RBP12.18□□□□□ -0.46
TRIM28-210ENST00000597618 PCDHA11Q9Y5I1 949 aa12.18□□□□□ -0.46
TRIM28-210ENST00000597618 SLC4A7Q9Y6M7 1214 aa12.18□□□□□ -0.46
TRIM28-210ENST00000597618 CYP2D7A0A087X1C5 515 aa12.17□□□□□ -0.46
TRIM28-210ENST00000597618 USP17L12C9JPN9 530 aa12.17□□□□□ -0.46
TRIM28-210ENST00000597618 USP17L21D6R901 530 aa12.17□□□□□ -0.46
TRIM28-210ENST00000597618 CTAGE5O15320 804 aa12.17□□□□□ -0.46
TRIM28-210ENST00000597618 GTPBP6O43824 516 aaPredicted RBP12.17□□□□□ -0.46
TRIM28-210ENST00000597618 ZBED4O75132 1171 aa12.17□□□□□ -0.46
TRIM28-210ENST00000597618 KCNQ1P51787 676 aa12.17□□□□□ -0.46
TRIM28-210ENST00000597618 CEP85Q6P2H3 762 aa12.17□□□□□ -0.46
TRIM28-210ENST00000597618 RPUSD2Q8IZ73 545 aaKnown RBP12.17□□□□□ -0.46
TRIM28-210ENST00000597618 SLC43A3Q8NBI5 491 aa12.17□□□□□ -0.46
TRIM28-210ENST00000597618 FGD4Q96M96 766 aa12.17□□□□□ -0.46
TRIM28-210ENST00000597618 NUP88Q99567 741 aaPredicted RBP12.17□□□□□ -0.46
TRIM28-210ENST00000597618 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.17□□□□□ -0.464e-10■■□□□ 14.2
TRIM28-210ENST00000597618 IL1RAPL2Q9NP60 686 aa12.17□□□□□ -0.46
TRIM28-210ENST00000597618 UMODL1Q5DID0 1318 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 ZBBXA8MT70 800 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 SMIM22K7EJ46 135 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 PFKMP08237 780 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 ATP2A2P16615 1042 aaKnown RBP12.16□□□□□ -0.46
TRIM28-210ENST00000597618 ADD2P35612 726 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 SLC4A3P48751 1232 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 RABGGTBP53611 331 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 CCL23P55773 120 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 BEX3Q00994 111 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 ITGA7Q13683 1181 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 CXCL17Q6UXB2 119 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 NOL8Q76FK4 1167 aaKnown RBP12.16□□□□□ -0.46
TRIM28-210ENST00000597618 CCDC144CPQ8IYA2 1237 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 CPXCR1Q8N123 301 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 CHST13Q8NET6 341 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 LRFN3Q9BTN0 628 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 NOC4LQ9BVI4 516 aaKnown RBP12.16□□□□□ -0.46
TRIM28-210ENST00000597618 KATNBL1Q9H079 304 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 COG5Q9UP83 839 aa12.16□□□□□ -0.46
TRIM28-210ENST00000597618 ZBED9Q6R2W3 1325 aa12.15□□□□□ -0.46
TRIM28-210ENST00000597618 F5H6K3 240 aa12.15□□□□□ -0.46
TRIM28-210ENST00000597618 ZEB2O60315 1214 aa12.15□□□□□ -0.46
TRIM28-210ENST00000597618 NDUFB10O96000 172 aa12.15□□□□□ -0.46
TRIM28-210ENST00000597618 MYOGP15173 224 aa12.15□□□□□ -0.46
TRIM28-210ENST00000597618 POU3F3P20264 500 aaPredicted RBP12.15□□□□□ -0.46
TRIM28-210ENST00000597618 OAZ1P54368 228 aa12.15□□□□□ -0.46
TRIM28-210ENST00000597618 TNFAIP2Q03169 654 aa12.15□□□□□ -0.46
TRIM28-210ENST00000597618 KLRC3Q07444 240 aa12.15□□□□□ -0.46
TRIM28-210ENST00000597618 FSCN1Q16658 493 aaKnown RBP12.15□□□□□ -0.46
TRIM28-210ENST00000597618 TMEM31Q5JXX7 168 aa12.15□□□□□ -0.46
TRIM28-210ENST00000597618 TLK2Q86UE8 772 aa12.15□□□□□ -0.46
TRIM28-210ENST00000597618 CLASRPQ8N2M8 674 aaKnown RBP12.15□□□□□ -0.46
TRIM28-210ENST00000597618 RHPN1Q8TCX5 695 aa12.15□□□□□ -0.46
TRIM28-210ENST00000597618 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.15□□□□□ -0.46
TRIM28-210ENST00000597618 WNT8AQ9H1J5 351 aa12.15□□□□□ -0.46
TRIM28-210ENST00000597618 SLC38A10Q9HBR0 1119 aa12.15□□□□□ -0.46
TRIM28-210ENST00000597618 RAVER2Q9HCJ3 691 aaKnown RBP12.15□□□□□ -0.46
TRIM28-210ENST00000597618 PAG1Q9NWQ8 432 aa12.15□□□□□ -0.46
TRIM28-210ENST00000597618 NYAP2Q9P242 653 aa12.15□□□□□ -0.46
TRIM28-210ENST00000597618 ARPP21Q9UBL0 812 aaPredicted RBP12.15□□□□□ -0.46
TRIM28-210ENST00000597618 B4GALT4O60513 344 aa12.14□□□□□ -0.47
TRIM28-210ENST00000597618 IFIT2P09913 472 aaKnown RBP12.14□□□□□ -0.47
TRIM28-210ENST00000597618 TMEM67Q5HYA8 995 aa12.14□□□□□ -0.47
TRIM28-210ENST00000597618 CTR9Q6PD62 1173 aa12.14□□□□□ -0.47
TRIM28-210ENST00000597618 KIFC2Q96AC6 838 aa12.14□□□□□ -0.47
TRIM28-210ENST00000597618 AP5M1Q9H0R1 490 aa12.14□□□□□ -0.47
TRIM28-210ENST00000597618 TRPV6Q9H1D0 765 aa12.14□□□□□ -0.47
TRIM28-210ENST00000597618 EPHX3Q9H6B9 360 aa12.14□□□□□ -0.47
TRIM28-210ENST00000597618 FEM1BQ9UK73 627 aa12.14□□□□□ -0.47
TRIM28-210ENST00000597618 GNEQ9Y223 722 aaKnown RBP12.14□□□□□ -0.47
TRIM28-210ENST00000597618 MTCH2Q9Y6C9 303 aa12.14□□□□□ -0.47
TRIM28-210ENST00000597618 SLC4A4Q9Y6R1 1079 aa12.14□□□□□ -0.47
TRIM28-210ENST00000597618 MUC6Q6W4X9 2439 aa12.13□□□□□ -0.47
TRIM28-210ENST00000597618 ASTN1O14525 1302 aa12.13□□□□□ -0.47
TRIM28-210ENST00000597618 PRRC2BQ5JSZ5 2229 aaKnown RBP12.13□□□□□ -0.47
TRIM28-210ENST00000597618 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.13□□□□□ -0.47
TRIM28-210ENST00000597618 ASB14A6NK59 587 aa12.13□□□□□ -0.47
TRIM28-210ENST00000597618 CA3P07451 260 aa12.13□□□□□ -0.47
TRIM28-210ENST00000597618 UBE3CQ15386 1083 aa12.13□□□□□ -0.47
TRIM28-210ENST00000597618 SLFNL1Q499Z3 407 aa12.13□□□□□ -0.47
TRIM28-210ENST00000597618 KIF1BPQ96EK5 621 aa12.13□□□□□ -0.47
TRIM28-210ENST00000597618 ACAD9Q9H845 621 aa12.13□□□□□ -0.47
TRIM28-210ENST00000597618 MKNK2Q9HBH9 465 aa12.13□□□□□ -0.47
TRIM28-210ENST00000597618 HOMER2Q9NSB8 354 aa12.13□□□□□ -0.47
TRIM28-210ENST00000597618 SYNPO2Q9UMS6 1093 aa12.13□□□□□ -0.47
TRIM28-210ENST00000597618 BAZ2AQ9UIF9 1905 aaKnown RBP12.13□□□□□ -0.47
TRIM28-210ENST00000597618 GRIN2DO15399 1336 aa12.12□□□□□ -0.47
TRIM28-210ENST00000597618 GBF1Q92538 1859 aa12.12□□□□□ -0.47
TRIM28-210ENST00000597618 GREB1LQ9C091 1923 aaPredicted RBP12.12□□□□□ -0.47
TRIM28-210ENST00000597618 FDX1P10109 184 aa12.12□□□□□ -0.47
TRIM28-210ENST00000597618 RLBP1P12271 317 aa12.12□□□□□ -0.47
TRIM28-210ENST00000597618 ACTN1P12814 892 aa12.12□□□□□ -0.47
TRIM28-210ENST00000597618 RASA1P20936 1047 aa12.12□□□□□ -0.47
TRIM28-210ENST00000597618 CNTN2Q02246 1040 aa12.12□□□□□ -0.47
TRIM28-210ENST00000597618 FAM133AQ8N9E0 248 aa12.12□□□□□ -0.47
TRIM28-210ENST00000597618 HLA-CQ95604 372 aa12.12□□□□□ -0.47
TRIM28-210ENST00000597618 SCLYQ96I15 445 aa12.12□□□□□ -0.47
TRIM28-210ENST00000597618 AGBL1Q96MI9 1066 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 165.3 ms