RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 DAGLBQ8NCG7 672 aa35.12■■■■□ 3.21
CTCF-203ENST00000566078 ZMYND12Q9H0C1 365 aa35.12■■■■□ 3.21
CTCF-203ENST00000566078 SLF1Q9BQI6 1058 aa35.11■■■■□ 3.21
CTCF-203ENST00000566078 C6orf50Q9HD87 102 aa35.11■■■■□ 3.21
CTCF-203ENST00000566078 SMCO2A6NFE2 343 aa35.1■■■■□ 3.21
CTCF-203ENST00000566078 ADAMTS3O15072 1205 aa35.1■■■■□ 3.21
CTCF-203ENST00000566078 SH3D19Q5HYK7 790 aa35.1■■■■□ 3.21
CTCF-203ENST00000566078 RANBP17Q9H2T7 1088 aaKnown RBP35.1■■■■□ 3.21
CTCF-203ENST00000566078 GBA2Q9HCG7 927 aaPredicted RBP35.1■■■■□ 3.21
CTCF-203ENST00000566078 CFAP45Q9UL16 551 aa35.1■■■■□ 3.21
CTCF-203ENST00000566078 ESYT2A0FGR8 921 aa35.1■■■■□ 3.21
CTCF-203ENST00000566078 CELF2O95319 508 aaKnown RBP35.1■■■■□ 3.21
CTCF-203ENST00000566078 ATL3Q6DD88 541 aa35.1■■■■□ 3.21
CTCF-203ENST00000566078 FBXO11Q86XK2 927 aa35.1■■■■□ 3.21
CTCF-203ENST00000566078 TNFRSF25Q93038 417 aa35.1■■■■□ 3.21
CTCF-203ENST00000566078 AMNQ9BXJ7 453 aa35.1■■■■□ 3.21
CTCF-203ENST00000566078 RBBP6Q7Z6E9 1792 aaKnown RBP35.1■■■■□ 3.21
CTCF-203ENST00000566078 FLOT1O75955 427 aa35.09■■■■□ 3.21
CTCF-203ENST00000566078 FKBP1BP68106 108 aa35.09■■■■□ 3.21
CTCF-203ENST00000566078 USP28Q96RU2 1077 aa35.09■■■■□ 3.21
CTCF-203ENST00000566078 FTOQ9C0B1 505 aaKnown RBP eCLIP35.09■■■■□ 3.21
CTCF-203ENST00000566078 PRPF40AO75400 957 aaKnown RBP35.08■■■■□ 3.21
CTCF-203ENST00000566078 GNA11P29992 359 aa35.08■■■■□ 3.21
CTCF-203ENST00000566078 PPIL2Q13356 520 aa35.08■■■■□ 3.21
CTCF-203ENST00000566078 OPTNQ96CV9 577 aa35.08■■■■□ 3.21
CTCF-203ENST00000566078 PCDHA1Q9Y5I3 950 aa35.08■■■■□ 3.21
CTCF-203ENST00000566078 IRF6O14896 467 aa35.07■■■■□ 3.21
CTCF-203ENST00000566078 PTMSP20962 102 aa35.07■■■■□ 3.21
CTCF-203ENST00000566078 ADCY7P51828 1080 aa35.07■■■■□ 3.21
CTCF-203ENST00000566078 CEBPZQ03701 1054 aaKnown RBP35.07■■■■□ 3.21
CTCF-203ENST00000566078 CSPP1Q1MSJ5 1256 aa35.07■■■■□ 3.21
CTCF-203ENST00000566078 CCDC174Q6PII3 467 aa35.07■■■■□ 3.21
CTCF-203ENST00000566078 PRPF38AQ8NAV1 312 aaKnown RBP35.07■■■■□ 3.21
CTCF-203ENST00000566078 TMEM87AQ8NBN3 555 aa35.07■■■■□ 3.21
CTCF-203ENST00000566078 SCAND2PQ9GZW5 306 aaPredicted RBP35.07■■■■□ 3.21
CTCF-203ENST00000566078 UNCXA6NJT0 531 aa35.06■■■■□ 3.2
CTCF-203ENST00000566078 USH1GQ495M9 461 aa35.06■■■■□ 3.2
CTCF-203ENST00000566078 GPBP1L1Q9HC44 474 aaPredicted RBP35.06■■■■□ 3.2
CTCF-203ENST00000566078 LMBRD1Q9NUN5 540 aa35.06■■■■□ 3.2
CTCF-203ENST00000566078 FAM205CA6NFA0 338 aa35.06■■■■□ 3.2
CTCF-203ENST00000566078 ITGBL1O95965 494 aaPredicted RBP35.06■■■■□ 3.2
CTCF-203ENST00000566078 EARS2Q5JPH6 523 aaKnown RBP35.06■■■■□ 3.2
CTCF-203ENST00000566078 C2orf69Q8N8R5 385 aa35.06■■■■□ 3.2
CTCF-203ENST00000566078 RASGRP4Q8TDF6 673 aa35.06■■■■□ 3.2
CTCF-203ENST00000566078 SPATA32Q96LK8 384 aa35.06■■■■□ 3.2
CTCF-203ENST00000566078 PPP1R9AQ9ULJ8 1098 aa35.06■■■■□ 3.2
CTCF-203ENST00000566078 M0R2N6 131 aa35.05■■■■□ 3.2
CTCF-203ENST00000566078 NOM1Q5C9Z4 860 aaKnown RBP35.05■■■■□ 3.2
CTCF-203ENST00000566078 BICD2Q8TD16 824 aa35.05■■■■□ 3.2
CTCF-203ENST00000566078 PCDHA6Q9UN73 950 aa35.05■■■■□ 3.2
CTCF-203ENST00000566078 PCDHA8Q9Y5H6 950 aa35.05■■■■□ 3.2
CTCF-203ENST00000566078 LEO1Q8WVC0 666 aaPredicted RBP35.04■■■■□ 3.2
CTCF-203ENST00000566078 A0A0G2JLL6 359 aaPredicted RBP35.03■■■■□ 3.2
CTCF-203ENST00000566078 CXCL11O14625 94 aa35.03■■■■□ 3.2
CTCF-203ENST00000566078 PRRT2Q7Z6L0 340 aaPredicted RBP35.03■■■■□ 3.2
CTCF-203ENST00000566078 SLC10A4Q96EP9 437 aa35.03■■■■□ 3.2
CTCF-203ENST00000566078 RIC8AQ9NPQ8 531 aa35.03■■■■□ 3.2
CTCF-203ENST00000566078 KCNH4Q9UQ05 1017 aa35.03■■■■□ 3.2
CTCF-203ENST00000566078 CLIC4Q9Y696 253 aa35.03■■■■□ 3.2
CTCF-203ENST00000566078 MYH7BA7E2Y1 1941 aa35.03■■■■□ 3.2
CTCF-203ENST00000566078 TAL1P17542 331 aaPredicted RBP35.03■■■■□ 3.2
CTCF-203ENST00000566078 RILPL1Q5EBL4 403 aa35.03■■■■□ 3.2
CTCF-203ENST00000566078 GADL1Q6ZQY3 521 aa35.03■■■■□ 3.2
CTCF-203ENST00000566078 PIK3AP1Q6ZUJ8 805 aa35.03■■■■□ 3.2
CTCF-203ENST00000566078 CUL5Q93034 780 aa35.03■■■■□ 3.2
CTCF-203ENST00000566078 RTEL1Q9NZ71 1219 aa35.03■■■■□ 3.2
CTCF-203ENST00000566078 TRAF1Q13077 416 aa35.02■■■■□ 3.2
CTCF-203ENST00000566078 REXO1Q8N1G1 1221 aaKnown RBP35.02■■■■□ 3.2
CTCF-203ENST00000566078 POLR3EQ9NVU0 708 aa35.02■■■■□ 3.2
CTCF-203ENST00000566078 A0A0G2JMZ2 1700 aa35.02■■■■□ 3.2
CTCF-203ENST00000566078 ELP1O95163 1332 aa35.01■■■■□ 3.2
CTCF-203ENST00000566078 TOB1P50616 345 aaPredicted RBP35.01■■■■□ 3.19
CTCF-203ENST00000566078 ANO1Q5XXA6 986 aa35.01■■■■□ 3.19
CTCF-203ENST00000566078 CATSPERGQ6ZRH7 1159 aa35.01■■■■□ 3.19
CTCF-203ENST00000566078 NOL7Q9UMY1 257 aaKnown RBP35.01■■■■□ 3.19
CTCF-203ENST00000566078 CCDC194A0A1B0GVG4 234 aa35■■■■□ 3.19
CTCF-203ENST00000566078 USP17L15C9J2P7 530 aa35■■■■□ 3.19
CTCF-203ENST00000566078 USP17L13C9JLJ4 530 aa35■■■■□ 3.19
CTCF-203ENST00000566078 USP17L11C9JVI0 530 aa35■■■■□ 3.19
CTCF-203ENST00000566078 USP17L18D6R9N7 530 aa35■■■■□ 3.19
CTCF-203ENST00000566078 USP17L22D6RA61 530 aa35■■■■□ 3.19
CTCF-203ENST00000566078 USP17L17D6RBQ6 530 aa35■■■■□ 3.19
CTCF-203ENST00000566078 USP17L19D6RCP7 530 aa35■■■■□ 3.19
CTCF-203ENST00000566078 USP17L20D6RJB6 530 aa35■■■■□ 3.19
CTCF-203ENST00000566078 USP17L24Q0WX57 530 aa35■■■■□ 3.19
CTCF-203ENST00000566078 TREML2Q5T2D2 321 aa35■■■■□ 3.19
CTCF-203ENST00000566078 PROCA1Q8NCQ7 364 aaPredicted RBP35■■■■□ 3.19
CTCF-203ENST00000566078 GJA5P36382 358 aa34.99■■■■□ 3.19
CTCF-203ENST00000566078 PSTPIP2Q9H939 334 aa34.99■■■■□ 3.19
CTCF-203ENST00000566078 SLC38A10Q9HBR0 1119 aa34.99■■■■□ 3.19
CTCF-203ENST00000566078 BIN2Q9UBW5 565 aaPredicted RBP34.99■■■■□ 3.19
CTCF-203ENST00000566078 NASPP49321 788 aaPredicted RBP34.99■■■■□ 3.19
CTCF-203ENST00000566078 MRPL12P52815 198 aaKnown RBP34.99■■■■□ 3.19
CTCF-203ENST00000566078 CST9Q5W186 159 aa34.99■■■■□ 3.19
CTCF-203ENST00000566078 ATG4CQ96DT6 458 aa34.99■■■■□ 3.19
CTCF-203ENST00000566078 GLT8D2Q9H1C3 349 aa34.99■■■■□ 3.19
CTCF-203ENST00000566078 CTDP1Q9Y5B0 961 aaPredicted RBP34.99■■■■□ 3.19
CTCF-203ENST00000566078 ATP2B1P20020 1258 aa34.98■■■■□ 3.19
CTCF-203ENST00000566078 STK38Q15208 465 aa34.98■■■■□ 3.19
CTCF-203ENST00000566078 SF3A1Q15459 793 aaKnown RBP34.98■■■■□ 3.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms