RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 CTAGE1Q96RT6 745 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 LONRF2Q1L5Z9 754 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 FILIP1LQ4L180 1135 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 CT47A1Q5JQC4 288 aaPredicted RBP14.11□□□□□ -0.15
RNF4-222ENST00000541204 SRGAP1Q7Z6B7 1085 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 FERMT2Q96AC1 680 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 CALCOCO1Q9P1Z2 691 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 ZNF219Q9P2Y4 722 aaPredicted RBP14.11□□□□□ -0.15
RNF4-222ENST00000541204 CCDC88AQ3V6T2 1871 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 KIAA1551Q9HCM1 1747 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 ABL1P00519 1130 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 TFRCP02786 760 aaKnown RBP14.11□□□□□ -0.15
RNF4-222ENST00000541204 HNRNPH2P55795 449 aaKnown RBP14.11□□□□□ -0.15
RNF4-222ENST00000541204 RHBDL3P58872 404 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 WWC2Q6AWC2 1192 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 C15orf52Q6ZUT6 534 aaKnown RBP14.11□□□□□ -0.15
RNF4-222ENST00000541204 CLEC10AQ8IUN9 316 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 BLIDQ8IZY5 108 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 ACRBPQ8NEB7 543 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 ZBTB22O15209 634 aa14.1□□□□□ -0.15
RNF4-222ENST00000541204 SLURP2P0DP57 97 aa14.1□□□□□ -0.15
RNF4-222ENST00000541204 GYS2P54840 703 aa14.1□□□□□ -0.15
RNF4-222ENST00000541204 GRM4Q14833 912 aa14.1□□□□□ -0.15
RNF4-222ENST00000541204 IL17AQ16552 155 aa14.1□□□□□ -0.15
RNF4-222ENST00000541204 ZBTB9Q96C00 473 aa14.1□□□□□ -0.15
RNF4-222ENST00000541204 KLRF2D3W0D1 207 aa14.1□□□□□ -0.15
RNF4-222ENST00000541204 KIF4BQ2VIQ3 1234 aa14.1□□□□□ -0.15
RNF4-222ENST00000541204 COL23A1Q86Y22 540 aaPredicted RBP14.1□□□□□ -0.15
RNF4-222ENST00000541204 CNGA4Q8IV77 575 aa14.1□□□□□ -0.15
RNF4-222ENST00000541204 CEP95Q96GE4 821 aa14.1□□□□□ -0.15
RNF4-222ENST00000541204 ANKZF1Q9H8Y5 726 aa14.1□□□□□ -0.15
RNF4-222ENST00000541204 CDC23Q9UJX2 597 aa14.1□□□□□ -0.15
RNF4-222ENST00000541204 DAGLAQ9Y4D2 1042 aa14.1□□□□□ -0.15
RNF4-222ENST00000541204 CCDC151A5D8V7 595 aa14.09□□□□□ -0.15
RNF4-222ENST00000541204 G3V3G9 751 aa14.09□□□□□ -0.15
RNF4-222ENST00000541204 HOXA10P31260 410 aaPredicted RBP14.09□□□□□ -0.15
RNF4-222ENST00000541204 KRT31Q15323 416 aa14.09□□□□□ -0.15
RNF4-222ENST00000541204 DCAF8Q5TAQ9 597 aa14.09□□□□□ -0.15
RNF4-222ENST00000541204 ZC3H12CQ9C0D7 883 aaKnown RBP14.09□□□□□ -0.15
RNF4-222ENST00000541204 UBA5Q9GZZ9 404 aa14.09□□□□□ -0.15
RNF4-222ENST00000541204 VPS16Q9H269 839 aa14.09□□□□□ -0.15
RNF4-222ENST00000541204 RNF225M0QZC1 329 aaPredicted RBP14.09□□□□□ -0.15
RNF4-222ENST00000541204 APBA3O96018 575 aa14.09□□□□□ -0.15
RNF4-222ENST00000541204 ATP2C1P98194 919 aaPredicted RBP14.09□□□□□ -0.15
RNF4-222ENST00000541204 INF2Q27J81 1249 aa14.09□□□□□ -0.15
RNF4-222ENST00000541204 JAKMIP3Q5VZ66 844 aa14.09□□□□□ -0.15
RNF4-222ENST00000541204 RRAGBQ5VZM2 374 aa14.09□□□□□ -0.15
RNF4-222ENST00000541204 SLC35F6Q8N357 371 aa14.09□□□□□ -0.15
RNF4-222ENST00000541204 CRAMP1Q96RY5 1269 aa14.09□□□□□ -0.15
RNF4-222ENST00000541204 PLIN2Q99541 437 aa14.09□□□□□ -0.15
RNF4-222ENST00000541204 PODXL2Q9NZ53 605 aa14.09□□□□□ -0.15
RNF4-222ENST00000541204 CCDC194A0A1B0GVG4 234 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 N4BP3O15049 544 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 ERVK-24P63145 666 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 TMED8Q6PL24 325 aaPredicted RBP14.08□□□□□ -0.16
RNF4-222ENST00000541204 C16orf86Q6ZW13 317 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 CERS5Q8N5B7 392 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 CEP112Q8N8E3 955 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 PCDHA4Q9UN74 947 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 TTF2Q9UNY4 1162 aaKnown RBP14.08□□□□□ -0.16
RNF4-222ENST00000541204 FRMPD2Q68DX3 1309 aaPredicted RBP14.08□□□□□ -0.16
RNF4-222ENST00000541204 MYH8P13535 1937 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 LAMB1P07942 1786 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 UBR3Q6ZT12 1888 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 CTAGE9A4FU28 777 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 PP2D1A8MPX8 630 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 BMP15O95972 392 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 MMP10P09238 476 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 BRD3Q15059 726 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 E2F4Q16254 413 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 ZNF622Q969S3 477 aaKnown RBP eCLIP14.08□□□□□ -0.16
RNF4-222ENST00000541204 PNKPQ96T60 521 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 MTRQ99707 1265 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 ZNF287Q9HBT7 754 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 KCNQ5Q9NR82 932 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 ABHD10Q9NUJ1 306 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 ROBO3Q96MS0 1386 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 MAST2Q6P0Q8 1798 aa14.08□□□□□ -0.16
RNF4-222ENST00000541204 H3BQF6 201 aa14.07□□□□□ -0.16
RNF4-222ENST00000541204 CALML3P27482 149 aa14.07□□□□□ -0.16
RNF4-222ENST00000541204 DPP8Q6V1X1 898 aaPredicted RBP14.07□□□□□ -0.16
RNF4-222ENST00000541204 LRRC47Q8N1G4 583 aaKnown RBP14.07□□□□□ -0.16
RNF4-222ENST00000541204 RASSF8Q8NHQ8 419 aa14.07□□□□□ -0.16
RNF4-222ENST00000541204 NUP88Q99567 741 aaPredicted RBP14.07□□□□□ -0.16
RNF4-222ENST00000541204 TAB2Q9NYJ8 693 aa14.07□□□□□ -0.16
RNF4-222ENST00000541204 MAPK8IP1Q9UQF2 711 aa14.07□□□□□ -0.16
RNF4-222ENST00000541204 ITIH6Q6UXX5 1313 aa14.07□□□□□ -0.16
RNF4-222ENST00000541204 USP17L5A8MUK1 530 aa14.07□□□□□ -0.16
RNF4-222ENST00000541204 PARP1P09874 1014 aaKnown RBP14.07□□□□□ -0.16
RNF4-222ENST00000541204 SRGNP10124 158 aa14.07□□□□□ -0.16
RNF4-222ENST00000541204 PLCG2P16885 1265 aa14.07□□□□□ -0.16
RNF4-222ENST00000541204 SP8Q8IXZ3 490 aa14.07□□□□□ -0.16
RNF4-222ENST00000541204 IQUBQ8NA54 791 aa14.07□□□□□ -0.16
RNF4-222ENST00000541204 TBC1D22AQ8WUA7 517 aa14.07□□□□□ -0.16
RNF4-222ENST00000541204 CCDC51Q96ER9 411 aa14.07□□□□□ -0.16
RNF4-222ENST00000541204 DDX4Q9NQI0 724 aaKnown RBP14.07□□□□□ -0.16
RNF4-222ENST00000541204 PCDHA6Q9UN73 950 aa14.07□□□□□ -0.16
RNF4-222ENST00000541204 ATP6V0A2Q9Y487 856 aa14.07□□□□□ -0.16
RNF4-222ENST00000541204 PCDHA8Q9Y5H6 950 aa14.07□□□□□ -0.16
RNF4-222ENST00000541204 MAP2K7O14733 419 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms