RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 PDLIM7Q9NR12 457 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 IL17RBQ9NRM6 502 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 RNF146Q9NTX7 359 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 TACC3Q9Y6A5 838 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 SYNGAP1Q96PV0 1343 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 PLIN4Q96Q06 1357 aa15.37■□□□□ 0.05
CPSF1-204ENST00000529288 ADAMTS4O75173 837 aa15.37■□□□□ 0.05
CPSF1-204ENST00000529288 C6orf222P0C671 652 aaPredicted RBP15.37■□□□□ 0.05
CPSF1-204ENST00000529288 FDX1P10109 184 aa15.37■□□□□ 0.05
CPSF1-204ENST00000529288 ACLYP53396 1101 aa15.37■□□□□ 0.05
CPSF1-204ENST00000529288 HAND2P61296 217 aa15.37■□□□□ 0.05
CPSF1-204ENST00000529288 IRX5P78411 483 aaPredicted RBP15.37■□□□□ 0.05
CPSF1-204ENST00000529288 NMIQ13287 307 aaPredicted RBP15.37■□□□□ 0.05
CPSF1-204ENST00000529288 SNX17Q15036 470 aa15.37■□□□□ 0.05
CPSF1-204ENST00000529288 SHHQ15465 462 aa15.37■□□□□ 0.05
CPSF1-204ENST00000529288 KCNA10Q16322 511 aa15.37■□□□□ 0.05
CPSF1-204ENST00000529288 GPR153Q6NV75 609 aa15.37■□□□□ 0.05
CPSF1-204ENST00000529288 MAMDC4Q6UXC1 1216 aa15.37■□□□□ 0.05
CPSF1-204ENST00000529288 ARMCX2Q7L311 632 aa15.37■□□□□ 0.05
CPSF1-204ENST00000529288 TRERF1Q96PN7 1200 aa15.37■□□□□ 0.05
CPSF1-204ENST00000529288 RWDD1Q9H446 243 aaPredicted RBP15.37■□□□□ 0.05
CPSF1-204ENST00000529288 SPC25Q9HBM1 224 aa15.37■□□□□ 0.05
CPSF1-204ENST00000529288 FRMPD3Q5JV73 1810 aa15.37■□□□□ 0.05
CPSF1-204ENST00000529288 SYNRGQ9UMZ2 1314 aa15.37■□□□□ 0.05
CPSF1-204ENST00000529288 COL11A1P12107 1806 aaPredicted RBP15.36■□□□□ 0.05
CPSF1-204ENST00000529288 MYADML2A6NDP7 307 aa15.36■□□□□ 0.05
CPSF1-204ENST00000529288 FGAP02671 866 aa15.36■□□□□ 0.05
CPSF1-204ENST00000529288 CLTBP09497 229 aa15.36■□□□□ 0.05
CPSF1-204ENST00000529288 CCDC144BQ3MJ40 725 aa15.36■□□□□ 0.05
CPSF1-204ENST00000529288 C9orf50Q5SZB4 431 aa15.36■□□□□ 0.05
CPSF1-204ENST00000529288 ZNF467Q7Z7K2 595 aaPredicted RBP15.36■□□□□ 0.05
CPSF1-204ENST00000529288 CCDC144CPQ8IYA2 1237 aa15.36■□□□□ 0.05
CPSF1-204ENST00000529288 NUP133Q8WUM0 1156 aa15.36■□□□□ 0.05
CPSF1-204ENST00000529288 ABHD16BQ9H3Z7 469 aa15.36■□□□□ 0.05
CPSF1-204ENST00000529288 GPCPD1Q9NPB8 672 aa15.36■□□□□ 0.05
CPSF1-204ENST00000529288 TMEM39AQ9NV64 488 aa15.36■□□□□ 0.05
CPSF1-204ENST00000529288 ANAPC4Q9UJX5 808 aa15.36■□□□□ 0.05
CPSF1-204ENST00000529288 PRR12Q9ULL5 1215 aa15.36■□□□□ 0.05
CPSF1-204ENST00000529288 DNAH12Q6ZR08 3092 aa15.36■□□□□ 0.05
CPSF1-204ENST00000529288 FRMPD2Q68DX3 1309 aaPredicted RBP15.36■□□□□ 0.05
CPSF1-204ENST00000529288 GREB1LQ9C091 1923 aaPredicted RBP15.35■□□□□ 0.05
CPSF1-204ENST00000529288 DUSP11O75319 330 aaKnown RBP15.35■□□□□ 0.05
CPSF1-204ENST00000529288 RAG1P15918 1043 aa15.35■□□□□ 0.05
CPSF1-204ENST00000529288 SLC16A2P36021 539 aa15.35■□□□□ 0.05
CPSF1-204ENST00000529288 ALX1Q15699 326 aa15.35■□□□□ 0.05
CPSF1-204ENST00000529288 TTBK2Q6IQ55 1244 aa15.35■□□□□ 0.05
CPSF1-204ENST00000529288 NSMFQ6X4W1 530 aa15.35■□□□□ 0.05
CPSF1-204ENST00000529288 ZNF589Q86UQ0 364 aaPredicted RBP15.35■□□□□ 0.05
CPSF1-204ENST00000529288 FGD4Q96M96 766 aa15.35■□□□□ 0.05
CPSF1-204ENST00000529288 TSEN34Q9BSV6 310 aaKnown RBP15.35■□□□□ 0.05
CPSF1-204ENST00000529288 A1CFQ9NQ94 594 aaKnown RBP15.35■□□□□ 0.05
CPSF1-204ENST00000529288 MTMR10Q9NXD2 777 aa15.35■□□□□ 0.05
CPSF1-204ENST00000529288 CCPG1Q9ULG6 757 aa15.35■□□□□ 0.05
CPSF1-204ENST00000529288 ZNF536O15090 1300 aa15.35■□□□□ 0.05
CPSF1-204ENST00000529288 PARP14Q460N5 1801 aa15.34■□□□□ 0.05
CPSF1-204ENST00000529288 SOWAHBA6NEL2 793 aa15.34■□□□□ 0.05
CPSF1-204ENST00000529288 MOXD2PA6NHM9 499 aa15.34■□□□□ 0.05
CPSF1-204ENST00000529288 DCDC2CA8MYV0 355 aa15.34■□□□□ 0.05
CPSF1-204ENST00000529288 ORC4O43929 436 aa15.34■□□□□ 0.05
CPSF1-204ENST00000529288 HSPD1P10809 573 aaKnown RBP15.34■□□□□ 0.05
CPSF1-204ENST00000529288 TKFCQ3LXA3 575 aa15.34■□□□□ 0.05
CPSF1-204ENST00000529288 MUM1L1Q5H9M0 696 aa15.34■□□□□ 0.05
CPSF1-204ENST00000529288 GNASQ5JWF2 1037 aa15.34■□□□□ 0.05
CPSF1-204ENST00000529288 C1orf53Q5VUE5 145 aa15.34■□□□□ 0.05
CPSF1-204ENST00000529288 EEPD1Q7L9B9 569 aa15.34■□□□□ 0.05
CPSF1-204ENST00000529288 KLHDC9Q8NEP7 349 aa15.34■□□□□ 0.05
CPSF1-204ENST00000529288 DCAF4Q8WV16 495 aa15.34■□□□□ 0.05
CPSF1-204ENST00000529288 GLT1D1Q96MS3 346 aa15.34■□□□□ 0.05
CPSF1-204ENST00000529288 DDX49Q9Y6V7 483 aaKnown RBP15.34■□□□□ 0.05
CPSF1-204ENST00000529288 ASB14A6NK59 587 aa15.33■□□□□ 0.04
CPSF1-204ENST00000529288 ADCY6O43306 1168 aa15.33■□□□□ 0.04
CPSF1-204ENST00000529288 PLA2G6O60733 806 aa15.33■□□□□ 0.04
CPSF1-204ENST00000529288 ASGR1P07306 291 aa15.33■□□□□ 0.04
CPSF1-204ENST00000529288 TOP1P11387 765 aaKnown RBP15.33■□□□□ 0.04
CPSF1-204ENST00000529288 ITGB8P26012 769 aa15.33■□□□□ 0.04
CPSF1-204ENST00000529288 BEX3Q00994 111 aa15.33■□□□□ 0.04
CPSF1-204ENST00000529288 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.33■□□□□ 0.04
CPSF1-204ENST00000529288 FAM133AQ8N9E0 248 aa15.33■□□□□ 0.04
CPSF1-204ENST00000529288 PCSK9Q8NBP7 692 aaKnown RBP15.33■□□□□ 0.04
CPSF1-204ENST00000529288 TMEM47Q9BQJ4 181 aa15.33■□□□□ 0.04
CPSF1-204ENST00000529288 CCDC171Q6TFL3 1326 aa15.33■□□□□ 0.04
CPSF1-204ENST00000529288 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.32■□□□□ 0.04
CPSF1-204ENST00000529288 IGHDP01880 384 aa15.32■□□□□ 0.04
CPSF1-204ENST00000529288 SDSP20132 328 aa15.32■□□□□ 0.04
CPSF1-204ENST00000529288 TNFAIP2Q03169 654 aa15.32■□□□□ 0.04
CPSF1-204ENST00000529288 FAAP100Q0VG06 881 aa15.32■□□□□ 0.04
CPSF1-204ENST00000529288 ZNF697Q5TEC3 545 aa15.32■□□□□ 0.04
CPSF1-204ENST00000529288 SYDE2Q5VT97 1194 aa15.32■□□□□ 0.04
CPSF1-204ENST00000529288 MFSD6Q6ZSS7 791 aa15.32■□□□□ 0.04
CPSF1-204ENST00000529288 CHD1LQ86WJ1 897 aa15.32■□□□□ 0.04
CPSF1-204ENST00000529288 EXOC6Q8TAG9 804 aa15.32■□□□□ 0.04
CPSF1-204ENST00000529288 PURBQ96QR8 312 aaKnown RBP15.32■□□□□ 0.04
CPSF1-204ENST00000529288 STXBP5LQ9Y2K9 1186 aa15.32■□□□□ 0.04
CPSF1-204ENST00000529288 LAMA3Q16787 3333 aa15.32■□□□□ 0.04
CPSF1-204ENST00000529288 ZNFX1Q9P2E3 1918 aaKnown RBP15.31■□□□□ 0.04
CPSF1-204ENST00000529288 KIAA0355O15063 1070 aa15.31■□□□□ 0.04
CPSF1-204ENST00000529288 DYNC1LI2O43237 492 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-204ENST00000529288 EPHB4P54760 987 aa15.31■□□□□ 0.04
CPSF1-204ENST00000529288 MFAP1P55081 439 aaKnown RBP15.31■□□□□ 0.04
CPSF1-204ENST00000529288 GJA9P57773 515 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 166.1 ms