RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 ARVCFO00192 962 aa17.58■□□□□ 0.4
TRAF4-212ENST00000498540 CTAGE5O15320 804 aa17.58■□□□□ 0.4
TRAF4-212ENST00000498540 SMARCA5O60264 1052 aaPredicted RBP17.58■□□□□ 0.4
TRAF4-212ENST00000498540 ACRP10323 421 aa17.58■□□□□ 0.4
TRAF4-212ENST00000498540 FAM126BQ8IXS8 530 aa17.58■□□□□ 0.4
TRAF4-212ENST00000498540 ANKRD35Q8N283 1001 aa17.58■□□□□ 0.4
TRAF4-212ENST00000498540 VTI1AQ96AJ9 217 aa17.58■□□□□ 0.4
TRAF4-212ENST00000498540 KATNBL1Q9H079 304 aa17.58■□□□□ 0.4
TRAF4-212ENST00000498540 EPB41L4AQ9HCS5 686 aaPredicted RBP17.58■□□□□ 0.4
TRAF4-212ENST00000498540 CTDP1Q9Y5B0 961 aaPredicted RBP17.58■□□□□ 0.4
TRAF4-212ENST00000498540 PRDM1O75626 825 aa17.57■□□□□ 0.4
TRAF4-212ENST00000498540 GNASQ5JWF2 1037 aa17.57■□□□□ 0.4
TRAF4-212ENST00000498540 GIMAP6Q6P9H5 292 aa17.57■□□□□ 0.4
TRAF4-212ENST00000498540 CCDC129Q6ZRS4 1044 aa17.57■□□□□ 0.4
TRAF4-212ENST00000498540 ZNF365Q70YC5 407 aa17.57■□□□□ 0.4
TRAF4-212ENST00000498540 CCDC144CPQ8IYA2 1237 aa17.57■□□□□ 0.4
TRAF4-212ENST00000498540 LRRC47Q8N1G4 583 aaKnown RBP17.57■□□□□ 0.4
TRAF4-212ENST00000498540 PPM1EQ8WY54 764 aa17.57■□□□□ 0.4
TRAF4-212ENST00000498540 OSBP2Q969R2 916 aa17.57■□□□□ 0.4
TRAF4-212ENST00000498540 CEP95Q96GE4 821 aa17.57■□□□□ 0.4
TRAF4-212ENST00000498540 LRRCC1Q9C099 1032 aa17.57■□□□□ 0.4
TRAF4-212ENST00000498540 PRDM12Q9H4Q4 367 aa17.57■□□□□ 0.4
TRAF4-212ENST00000498540 SPC25Q9HBM1 224 aa17.57■□□□□ 0.4
TRAF4-212ENST00000498540 HOMER2Q9NSB8 354 aa17.57■□□□□ 0.4
TRAF4-212ENST00000498540 MYO9BQ13459 2157 aa17.57■□□□□ 0.4
TRAF4-212ENST00000498540 BEX3Q00994 111 aa17.56■□□□□ 0.4
TRAF4-212ENST00000498540 CNTN2Q02246 1040 aa17.56■□□□□ 0.4
TRAF4-212ENST00000498540 CCDC174Q6PII3 467 aa17.56■□□□□ 0.4
TRAF4-212ENST00000498540 TMEM199Q8N511 208 aa17.56■□□□□ 0.4
TRAF4-212ENST00000498540 CHST13Q8NET6 341 aa17.56■□□□□ 0.4
TRAF4-212ENST00000498540 GAS2L1Q99501 681 aaPredicted RBP17.56■□□□□ 0.4
TRAF4-212ENST00000498540 FBXO40Q9UH90 709 aa17.56■□□□□ 0.4
TRAF4-212ENST00000498540 FEM1BQ9UK73 627 aa17.56■□□□□ 0.4
TRAF4-212ENST00000498540 ASTN1O14525 1302 aa17.55■□□□□ 0.4
TRAF4-212ENST00000498540 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.55■□□□□ 0.4
TRAF4-212ENST00000498540 CD4P01730 458 aa17.55■□□□□ 0.4
TRAF4-212ENST00000498540 CYP2C18P33260 490 aa17.55■□□□□ 0.4
TRAF4-212ENST00000498540 OAZ1P54368 228 aa17.55■□□□□ 0.4
TRAF4-212ENST00000498540 PSRC1Q6PGN9 363 aaPredicted RBP17.55■□□□□ 0.4
TRAF4-212ENST00000498540 KBTBD3Q8NAB2 608 aa17.55■□□□□ 0.4
TRAF4-212ENST00000498540 APPBP2Q92624 585 aa17.55■□□□□ 0.4
TRAF4-212ENST00000498540 MKL1Q969V6 931 aa17.55■□□□□ 0.4
TRAF4-212ENST00000498540 MTMR4Q9NYA4 1195 aa17.55■□□□□ 0.4
TRAF4-212ENST00000498540 UMODL1Q5DID0 1318 aa17.54■□□□□ 0.4
TRAF4-212ENST00000498540 TNFRSF10AO00220 468 aa17.54■□□□□ 0.4
TRAF4-212ENST00000498540 TLR3O15455 904 aaKnown RBP17.54■□□□□ 0.4
TRAF4-212ENST00000498540 GPAA1O43292 621 aa17.54■□□□□ 0.4
TRAF4-212ENST00000498540 PTGS1P23219 599 aa17.54■□□□□ 0.4
TRAF4-212ENST00000498540 TDO2P48775 406 aa17.54■□□□□ 0.4
TRAF4-212ENST00000498540 NKX3-2P78367 333 aa17.54■□□□□ 0.4
TRAF4-212ENST00000498540 TSHZ3Q63HK5 1081 aa17.54■□□□□ 0.4
TRAF4-212ENST00000498540 FAM133AQ8N9E0 248 aa17.54■□□□□ 0.4
TRAF4-212ENST00000498540 GMCL1P1Q8NEA9 526 aa17.54■□□□□ 0.4
TRAF4-212ENST00000498540 ECHDC1Q9NTX5 307 aa17.54■□□□□ 0.4
TRAF4-212ENST00000498540 CXXC1Q9P0U4 656 aaPredicted RBP17.54■□□□□ 0.4
TRAF4-212ENST00000498540 DDX49Q9Y6V7 483 aaKnown RBP17.54■□□□□ 0.4
TRAF4-212ENST00000498540 PLIN4Q96Q06 1357 aa17.53■□□□□ 0.4
TRAF4-212ENST00000498540 LCTP09848 1927 aa17.53■□□□□ 0.4
TRAF4-212ENST00000498540 M0R2C6 588 aa17.53■□□□□ 0.4
TRAF4-212ENST00000498540 TTLL1O95922 423 aa17.53■□□□□ 0.4
TRAF4-212ENST00000498540 BMP3P12645 472 aa17.53■□□□□ 0.4
TRAF4-212ENST00000498540 ADGRE1Q14246 886 aa17.53■□□□□ 0.4
TRAF4-212ENST00000498540 AKNAD1Q5T1N1 836 aa17.53■□□□□ 0.4
TRAF4-212ENST00000498540 SLFN13Q68D06 897 aa17.53■□□□□ 0.4
TRAF4-212ENST00000498540 CXCL17Q6UXB2 119 aa17.53■□□□□ 0.4
TRAF4-212ENST00000498540 ZNF444Q8N0Y2 327 aaPredicted RBP17.53■□□□□ 0.4
TRAF4-212ENST00000498540 HERVK_113Q902F9 699 aa17.53■□□□□ 0.4
TRAF4-212ENST00000498540 ACAD9Q9H845 621 aa17.53■□□□□ 0.4
TRAF4-212ENST00000498540 IL23AQ9NPF7 189 aa17.53■□□□□ 0.4
TRAF4-212ENST00000498540 A1CFQ9NQ94 594 aaKnown RBP17.53■□□□□ 0.4
TRAF4-212ENST00000498540 SYNPO2Q9UMS6 1093 aa17.53■□□□□ 0.4
TRAF4-212ENST00000498540 CHD7Q9P2D1 2997 aa17.53■□□□□ 0.4
TRAF4-212ENST00000498540 ZNF536O15090 1300 aa17.52■□□□□ 0.4
TRAF4-212ENST00000498540 SOWAHBA6NEL2 793 aa17.52■□□□□ 0.4
TRAF4-212ENST00000498540 TMEM232C9JQI7 657 aa17.52■□□□□ 0.4
TRAF4-212ENST00000498540 RNF113AO15541 343 aaKnown RBP17.52■□□□□ 0.4
TRAF4-212ENST00000498540 TNFAIP2Q03169 654 aa17.52■□□□□ 0.4
TRAF4-212ENST00000498540 NOL8Q76FK4 1167 aaKnown RBP17.52■□□□□ 0.4
TRAF4-212ENST00000498540 MIER1Q8N108 512 aa17.52■□□□□ 0.4
TRAF4-212ENST00000498540 SLC43A3Q8NBI5 491 aa17.52■□□□□ 0.4
TRAF4-212ENST00000498540 AGBL1Q96MI9 1066 aa17.52■□□□□ 0.4
TRAF4-212ENST00000498540 NKX2-4Q9H2Z4 354 aa17.52■□□□□ 0.4
TRAF4-212ENST00000498540 RNF146Q9NTX7 359 aa17.52■□□□□ 0.4
TRAF4-212ENST00000498540 THEGQ9P2T0 379 aa17.52■□□□□ 0.4
TRAF4-212ENST00000498540 GNEQ9Y223 722 aaKnown RBP17.52■□□□□ 0.4
TRAF4-212ENST00000498540 GRIN2DO15399 1336 aa17.51■□□□□ 0.39
TRAF4-212ENST00000498540 APPP05067 770 aa17.51■□□□□ 0.39
TRAF4-212ENST00000498540 STAT2P52630 851 aa17.51■□□□□ 0.39
TRAF4-212ENST00000498540 RAB30Q15771 203 aa17.51■□□□□ 0.39
TRAF4-212ENST00000498540 CCDC85BQ15834 202 aaPredicted RBP17.51■□□□□ 0.39
TRAF4-212ENST00000498540 TLK2Q86UE8 772 aa17.51■□□□□ 0.39
TRAF4-212ENST00000498540 ATXN2LQ8WWM7 1075 aaKnown RBP17.51■□□□□ 0.39
TRAF4-212ENST00000498540 CHMP4CQ96CF2 233 aa17.51■□□□□ 0.39
TRAF4-212ENST00000498540 HIPK3Q9H422 1215 aa17.51■□□□□ 0.39
TRAF4-212ENST00000498540 ZNF287Q9HBT7 754 aa17.51■□□□□ 0.39
TRAF4-212ENST00000498540 MSRAQ9UJ68 235 aa17.51■□□□□ 0.39
TRAF4-212ENST00000498540 ISY1Q9ULR0 285 aaKnown RBP17.51■□□□□ 0.39
TRAF4-212ENST00000498540 YBX2Q9Y2T7 364 aaKnown RBP17.51■□□□□ 0.39
TRAF4-212ENST00000498540 GNAT2P19087 354 aa17.5■□□□□ 0.39
TRAF4-212ENST00000498540 COL9A1P20849 921 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms