RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 SENP2Q9HC62 589 aa18.57■□□□□ 0.56
UPF3A-208ENST00000484246 RAVER2Q9HCJ3 691 aaKnown RBP18.57■□□□□ 0.56
UPF3A-208ENST00000484246 GPCPD1Q9NPB8 672 aa18.57■□□□□ 0.56
UPF3A-208ENST00000484246 RIPK3Q9Y572 518 aa18.57■□□□□ 0.56
UPF3A-208ENST00000484246 PLXNB2O15031 1838 aa18.57■□□□□ 0.56
UPF3A-208ENST00000484246 PALM3A6NDB9 673 aaPredicted RBP18.56■□□□□ 0.56
UPF3A-208ENST00000484246 ELNP15502 786 aa18.56■□□□□ 0.56
UPF3A-208ENST00000484246 CYP2B6P20813 491 aa18.56■□□□□ 0.56
UPF3A-208ENST00000484246 SLC16A2P36021 539 aa18.56■□□□□ 0.56
UPF3A-208ENST00000484246 EXOSC10Q01780 885 aaKnown RBP18.56■□□□□ 0.56
UPF3A-208ENST00000484246 ADCK5Q3MIX3 580 aa18.56■□□□□ 0.56
UPF3A-208ENST00000484246 MAP3K21Q5TCX8 1036 aa18.56■□□□□ 0.56
UPF3A-208ENST00000484246 DHX32Q7L7V1 743 aaKnown RBP18.56■□□□□ 0.56
UPF3A-208ENST00000484246 TRIB2Q92519 343 aa18.56■□□□□ 0.56
UPF3A-208ENST00000484246 DIS3Q9Y2L1 958 aaKnown RBP18.56■□□□□ 0.56
UPF3A-208ENST00000484246 SNX14Q9Y5W7 946 aa18.56■□□□□ 0.56
UPF3A-208ENST00000484246 INHAP05111 366 aa18.55■□□□□ 0.56
UPF3A-208ENST00000484246 UBXN2AP68543 259 aa18.55■□□□□ 0.56
UPF3A-208ENST00000484246 MLLT1Q03111 559 aaPredicted RBP18.55■□□□□ 0.56
UPF3A-208ENST00000484246 CATIPQ7Z7H3 387 aa18.55■□□□□ 0.56
UPF3A-208ENST00000484246 CPXCR1Q8N123 301 aa18.55■□□□□ 0.56
UPF3A-208ENST00000484246 FBXL16Q8N461 479 aa18.55■□□□□ 0.56
UPF3A-208ENST00000484246 CHMP4CQ96CF2 233 aa18.55■□□□□ 0.56
UPF3A-208ENST00000484246 MMP19Q99542 508 aa18.55■□□□□ 0.56
UPF3A-208ENST00000484246 SLC5A4Q9NY91 659 aa18.55■□□□□ 0.56
UPF3A-208ENST00000484246 MAD2L2Q9UI95 211 aa18.55■□□□□ 0.56
UPF3A-208ENST00000484246 DNAJC25-GNG10A0A024R161 153 aa18.54■□□□□ 0.56
UPF3A-208ENST00000484246 GOLGA8HP0CJ92 632 aa18.54■□□□□ 0.56
UPF3A-208ENST00000484246 KCTD2Q14681 263 aa18.54■□□□□ 0.56
UPF3A-208ENST00000484246 OLFML2BQ68BL8 750 aa18.54■□□□□ 0.56
UPF3A-208ENST00000484246 ZNF654Q8IZM8 581 aa18.54■□□□□ 0.56
UPF3A-208ENST00000484246 MTMR8Q96EF0 704 aa18.54■□□□□ 0.56
UPF3A-208ENST00000484246 ACAD9Q9H845 621 aa18.54■□□□□ 0.56
UPF3A-208ENST00000484246 GPHNQ9NQX3 736 aaPredicted RBP18.54■□□□□ 0.56
UPF3A-208ENST00000484246 COBLO75128 1261 aa18.53■□□□□ 0.56
UPF3A-208ENST00000484246 RCAN1P53805 252 aa18.53■□□□□ 0.56
UPF3A-208ENST00000484246 NPLOC4Q8TAT6 608 aa18.53■□□□□ 0.56
UPF3A-208ENST00000484246 IL17RAQ96F46 866 aa18.53■□□□□ 0.56
UPF3A-208ENST00000484246 AGBL1Q96MI9 1066 aa18.53■□□□□ 0.56
UPF3A-208ENST00000484246 MAF1Q9H063 256 aa18.53■□□□□ 0.56
UPF3A-208ENST00000484246 RNF146Q9NTX7 359 aa18.53■□□□□ 0.56
UPF3A-208ENST00000484246 CCPG1Q9ULG6 757 aa18.53■□□□□ 0.56
UPF3A-208ENST00000484246 COL11A1P12107 1806 aaPredicted RBP18.52■□□□□ 0.56
UPF3A-208ENST00000484246 CALM1P0DP23 149 aa18.52■□□□□ 0.56
UPF3A-208ENST00000484246 CALM2P0DP24 149 aa18.52■□□□□ 0.56
UPF3A-208ENST00000484246 CALM3P0DP25 149 aa18.52■□□□□ 0.56
UPF3A-208ENST00000484246 CAPN2P17655 700 aa18.52■□□□□ 0.56
UPF3A-208ENST00000484246 PSMA5P28066 241 aa18.52■□□□□ 0.56
UPF3A-208ENST00000484246 ZNF792Q3KQV3 632 aa18.52■□□□□ 0.56
UPF3A-208ENST00000484246 CCDC174Q6PII3 467 aa18.52■□□□□ 0.56
UPF3A-208ENST00000484246 DPP9Q86TI2 863 aa18.52■□□□□ 0.56
UPF3A-208ENST00000484246 ADGRF4Q8IZF3 695 aa18.52■□□□□ 0.56
UPF3A-208ENST00000484246 STAG2Q8N3U4 1231 aa18.52■□□□□ 0.56
UPF3A-208ENST00000484246 JAKMIP1Q96N16 626 aaKnown RBP18.52■□□□□ 0.56
UPF3A-208ENST00000484246 AGXT2Q9BYV1 514 aa18.52■□□□□ 0.56
UPF3A-208ENST00000484246 TM6SF1Q9BZW5 370 aa18.52■□□□□ 0.56
UPF3A-208ENST00000484246 UBA5Q9GZZ9 404 aa18.52■□□□□ 0.56
UPF3A-208ENST00000484246 PAK6Q9NQU5 681 aaPredicted RBP18.52■□□□□ 0.56
UPF3A-208ENST00000484246 CCDC69A6NI79 296 aa18.51■□□□□ 0.55
UPF3A-208ENST00000484246 KLRF2D3W0D1 207 aa18.51■□□□□ 0.55
UPF3A-208ENST00000484246 SMARCA1P28370 1054 aa18.51■□□□□ 0.55
UPF3A-208ENST00000484246 KIF5BP33176 963 aa18.51■□□□□ 0.55
UPF3A-208ENST00000484246 SNAP25P60880 206 aa18.51■□□□□ 0.55
UPF3A-208ENST00000484246 MTFR1Q15390 333 aa18.51■□□□□ 0.55
UPF3A-208ENST00000484246 CDC37Q16543 378 aaPredicted RBP18.51■□□□□ 0.55
UPF3A-208ENST00000484246 CCL14Q16627 93 aa18.51■□□□□ 0.55
UPF3A-208ENST00000484246 BLOC1S2Q6QNY1 142 aa18.51■□□□□ 0.55
UPF3A-208ENST00000484246 ZNF467Q7Z7K2 595 aaPredicted RBP18.51■□□□□ 0.55
UPF3A-208ENST00000484246 MSL3Q8N5Y2 521 aaKnown RBP18.51■□□□□ 0.55
UPF3A-208ENST00000484246 MAML3Q96JK9 1138 aa18.51■□□□□ 0.55
UPF3A-208ENST00000484246 RIOX1Q9H6W3 641 aa18.51■□□□□ 0.55
UPF3A-208ENST00000484246 JMJD4Q9H9V9 463 aa18.51■□□□□ 0.55
UPF3A-208ENST00000484246 FLRT1Q9NZU1 646 aa18.51■□□□□ 0.55
UPF3A-208ENST00000484246 PFASO15067 1338 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 GJB1P08034 283 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 ALAS1P13196 640 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 CCL5P13501 91 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 RPS6KB1P23443 525 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 RGS19P49795 217 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 GNAQP50148 359 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 ANAPC15P60006 121 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 SLC35G1Q2M3R5 365 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 MFSD14CQ5VZR4 134 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 CTCFLQ8NI51 663 aaPredicted RBP18.5■□□□□ 0.55
UPF3A-208ENST00000484246 TRERF1Q96PN7 1200 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 LZTS2Q9BRK4 669 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 SPZ1Q9BXG8 430 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 LRRC2Q9BYS8 371 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 CPVLQ9H3G5 476 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 A1CFQ9NQ94 594 aaKnown RBP18.5■□□□□ 0.55
UPF3A-208ENST00000484246 BIN2Q9UBW5 565 aaPredicted RBP18.5■□□□□ 0.55
UPF3A-208ENST00000484246 NRBP1Q9UHY1 535 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 SLC12A7Q9Y666 1083 aa18.5■□□□□ 0.55
UPF3A-208ENST00000484246 RBBP6Q7Z6E9 1792 aaKnown RBP18.5■□□□□ 0.55
UPF3A-208ENST00000484246 RPTORQ8N122 1335 aa18.49■□□□□ 0.55
UPF3A-208ENST00000484246 PRKAR2AP13861 404 aaKnown RBP18.49■□□□□ 0.55
UPF3A-208ENST00000484246 QRICH1Q2TAL8 776 aa18.49■□□□□ 0.55
UPF3A-208ENST00000484246 APOA5Q6Q788 366 aa18.49■□□□□ 0.55
UPF3A-208ENST00000484246 NFXL1Q6ZNB6 911 aa18.49■□□□□ 0.55
UPF3A-208ENST00000484246 FAM133AQ8N9E0 248 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms