RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 KIAA1210Q9ULL0 1709 aa7.55□□□□□ -1.2
UPF3A-205ENST00000479712 ERVK-7P63135 1459 aa7.55□□□□□ -1.2
UPF3A-205ENST00000479712 ADGRB2O60241 1585 aa7.54□□□□□ -1.2
UPF3A-205ENST00000479712 FMN1Q68DA7 1419 aa7.54□□□□□ -1.2
UPF3A-205ENST00000479712 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.54□□□□□ -1.2
UPF3A-205ENST00000479712 ESYT3A0FGR9 886 aa7.54□□□□□ -1.2
UPF3A-205ENST00000479712 KIF3BO15066 747 aa7.54□□□□□ -1.2
UPF3A-205ENST00000479712 GAS2O43903 313 aaKnown RBP7.54□□□□□ -1.2
UPF3A-205ENST00000479712 SUSD5O60279 629 aa7.54□□□□□ -1.2
UPF3A-205ENST00000479712 DIAPH1O60610 1272 aaKnown RBP7.54□□□□□ -1.2
UPF3A-205ENST00000479712 GLB1P16278 677 aa7.54□□□□□ -1.2
UPF3A-205ENST00000479712 RAB6AP20340 208 aa7.54□□□□□ -1.2
UPF3A-205ENST00000479712 PREPP48147 710 aa7.54□□□□□ -1.2
UPF3A-205ENST00000479712 PMS1P54277 932 aaKnown RBP7.54□□□□□ -1.2
UPF3A-205ENST00000479712 ARMCX6Q7L4S7 300 aa7.54□□□□□ -1.2
UPF3A-205ENST00000479712 HOMER1Q86YM7 354 aa7.54□□□□□ -1.2
UPF3A-205ENST00000479712 BEND7Q8N7W2 519 aaPredicted RBP7.54□□□□□ -1.2
UPF3A-205ENST00000479712 BAHD1Q8TBE0 780 aaPredicted RBP7.54□□□□□ -1.2
UPF3A-205ENST00000479712 XAGE3Q8WTP9 111 aa7.54□□□□□ -1.2
UPF3A-205ENST00000479712 THAP3Q8WTV1 239 aaPredicted RBP7.54□□□□□ -1.2
UPF3A-205ENST00000479712 APPBP2Q92624 585 aa7.54□□□□□ -1.2
UPF3A-205ENST00000479712 LENG1Q96BZ8 264 aaPredicted RBP7.54□□□□□ -1.2
UPF3A-205ENST00000479712 FAM86C1Q9NVL1 165 aa7.54□□□□□ -1.2
UPF3A-205ENST00000479712 SUCOQ9UBS9 1254 aaKnown RBP7.54□□□□□ -1.2
UPF3A-205ENST00000479712 PCOLCE2Q9UKZ9 415 aa7.54□□□□□ -1.2
UPF3A-205ENST00000479712 CHD2O14647 1828 aaKnown RBP7.54□□□□□ -1.2
UPF3A-205ENST00000479712 CASZ1Q86V15 1759 aa7.54□□□□□ -1.2
UPF3A-205ENST00000479712 CNTNAP5Q8WYK1 1306 aa7.53□□□□□ -1.2
UPF3A-205ENST00000479712 CLEC3AO75596 197 aa7.53□□□□□ -1.2
UPF3A-205ENST00000479712 LRIG2O94898 1065 aa7.53□□□□□ -1.2
UPF3A-205ENST00000479712 APBA3O96018 575 aa7.53□□□□□ -1.2
UPF3A-205ENST00000479712 USP11P51784 963 aa7.53□□□□□ -1.2
UPF3A-205ENST00000479712 TDRD10Q5VZ19 366 aaKnown RBP7.53□□□□□ -1.2
UPF3A-205ENST00000479712 PPFIBP1Q86W92 1011 aa7.53□□□□□ -1.2
UPF3A-205ENST00000479712 MFSD2AQ8NA29 543 aa7.53□□□□□ -1.2
UPF3A-205ENST00000479712 EPN3Q9H201 632 aa7.53□□□□□ -1.2
UPF3A-205ENST00000479712 ACSS3Q9H6R3 686 aa7.53□□□□□ -1.2
UPF3A-205ENST00000479712 TMEM260Q9NX78 707 aa7.53□□□□□ -1.2
UPF3A-205ENST00000479712 TMEM2Q9UHN6 1383 aa7.53□□□□□ -1.2
UPF3A-205ENST00000479712 MST1RQ04912 1400 aa7.52□□□□□ -1.2
UPF3A-205ENST00000479712 SLC10A6Q3KNW5 377 aa7.52□□□□□ -1.21
UPF3A-205ENST00000479712 PLEKHG4Q58EX7 1191 aa7.52□□□□□ -1.21
UPF3A-205ENST00000479712 Q6ZS46 218 aa7.52□□□□□ -1.21
UPF3A-205ENST00000479712 NACC1Q96RE7 527 aa7.52□□□□□ -1.21
UPF3A-205ENST00000479712 YIPF2Q9BWQ6 316 aa7.52□□□□□ -1.21
UPF3A-205ENST00000479712 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.52□□□□□ -1.21
UPF3A-205ENST00000479712 LEMD3Q9Y2U8 911 aa7.52□□□□□ -1.21
UPF3A-205ENST00000479712 DAGLAQ9Y4D2 1042 aa7.52□□□□□ -1.21
UPF3A-205ENST00000479712 C9orf172C9J069 976 aa7.51□□□□□ -1.21
UPF3A-205ENST00000479712 PPM1GO15355 546 aaPredicted RBP7.51□□□□□ -1.21
UPF3A-205ENST00000479712 TP53P04637 393 aaPredicted RBP7.51□□□□□ -1.21
UPF3A-205ENST00000479712 NAT2P11245 290 aa7.51□□□□□ -1.21
UPF3A-205ENST00000479712 NRG1Q02297 640 aaPredicted RBP7.51□□□□□ -1.21
UPF3A-205ENST00000479712 SQSTM1Q13501 440 aa7.51□□□□□ -1.21
UPF3A-205ENST00000479712 CDPF1Q6NVV7 123 aa7.51□□□□□ -1.21
UPF3A-205ENST00000479712 SMARCC1Q92922 1105 aaPredicted RBP7.51□□□□□ -1.21
UPF3A-205ENST00000479712 SCARF2Q96GP6 870 aaPredicted RBP7.51□□□□□ -1.21
UPF3A-205ENST00000479712 SPATA9Q9BWV2 254 aa7.51□□□□□ -1.21
UPF3A-205ENST00000479712 MYOM2P54296 1465 aa7.5□□□□□ -1.21
UPF3A-205ENST00000479712 PIK3C2BO00750 1634 aa7.5□□□□□ -1.21
UPF3A-205ENST00000479712 IQCA1LA6NCM1 817 aa7.5□□□□□ -1.21
UPF3A-205ENST00000479712 C9IYK1 514 aa7.5□□□□□ -1.21
UPF3A-205ENST00000479712 NOS3P29474 1203 aa7.5□□□□□ -1.21
UPF3A-205ENST00000479712 ZNF143P52747 638 aaPredicted RBP7.5□□□□□ -1.21
UPF3A-205ENST00000479712 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.5□□□□□ -1.21
UPF3A-205ENST00000479712 CCDC144CPQ8IYA2 1237 aa7.5□□□□□ -1.21
UPF3A-205ENST00000479712 LRRC47Q8N1G4 583 aaKnown RBP7.5□□□□□ -1.21
UPF3A-205ENST00000479712 PPP1R13LQ8WUF5 828 aa7.5□□□□□ -1.21
UPF3A-205ENST00000479712 ZNF512BQ96KM6 892 aaPredicted RBP7.5□□□□□ -1.21
UPF3A-205ENST00000479712 MIPEPQ99797 713 aa7.5□□□□□ -1.21
UPF3A-205ENST00000479712 HAUS7Q99871 368 aa7.5□□□□□ -1.21
UPF3A-205ENST00000479712 SLKQ9H2G2 1235 aaPredicted RBP7.5□□□□□ -1.21
UPF3A-205ENST00000479712 SEMA6CQ9H3T2 930 aa7.5□□□□□ -1.21
UPF3A-205ENST00000479712 LGR6Q9HBX8 967 aa7.5□□□□□ -1.21
UPF3A-205ENST00000479712 PTCH2Q9Y6C5 1203 aa7.5□□□□□ -1.21
UPF3A-205ENST00000479712 SLIT2O94813 1529 aa7.5□□□□□ -1.21
UPF3A-205ENST00000479712 NCOA3Q9Y6Q9 1424 aa7.5□□□□□ -1.21
UPF3A-205ENST00000479712 COL22A1Q8NFW1 1626 aaPredicted RBP7.49□□□□□ -1.21
UPF3A-205ENST00000479712 ANKRD34BA5PLL1 514 aa7.49□□□□□ -1.21
UPF3A-205ENST00000479712 AGRPO00253 132 aa7.49□□□□□ -1.21
UPF3A-205ENST00000479712 ADAM23O75077 832 aa7.49□□□□□ -1.21
UPF3A-205ENST00000479712 NFICP08651 508 aa7.49□□□□□ -1.21
UPF3A-205ENST00000479712 IREB2P48200 963 aaKnown RBP7.49□□□□□ -1.21
UPF3A-205ENST00000479712 SV2CQ496J9 727 aa7.49□□□□□ -1.21
UPF3A-205ENST00000479712 SGO2Q562F6 1265 aa7.49□□□□□ -1.21
UPF3A-205ENST00000479712 AXDND1Q5T1B0 1012 aaPredicted RBP7.49□□□□□ -1.21
UPF3A-205ENST00000479712 RNF187Q5TA31 235 aaPredicted RBP7.49□□□□□ -1.21
UPF3A-205ENST00000479712 HEATR6Q6AI08 1181 aaKnown RBP7.49□□□□□ -1.21
UPF3A-205ENST00000479712 LETMD1Q6P1Q0 360 aa7.49□□□□□ -1.21
UPF3A-205ENST00000479712 FBLIM1Q8WUP2 373 aa7.49□□□□□ -1.21
UPF3A-205ENST00000479712 WFDC12Q8WWY7 111 aa7.49□□□□□ -1.21
UPF3A-205ENST00000479712 FAM46AQ96IP4 442 aaKnown RBP7.49□□□□□ -1.21
UPF3A-205ENST00000479712 UBL7Q96S82 380 aaPredicted RBP7.49□□□□□ -1.21
UPF3A-205ENST00000479712 MKRN2Q9H000 416 aaKnown RBP7.49□□□□□ -1.21
UPF3A-205ENST00000479712 CWC22Q9HCG8 908 aaKnown RBP7.49□□□□□ -1.21
UPF3A-205ENST00000479712 CEP131Q9UPN4 1083 aa7.49□□□□□ -1.21
UPF3A-205ENST00000479712 PARD3Q8TEW0 1356 aa7.48□□□□□ -1.21
UPF3A-205ENST00000479712 PCNTO95613 3336 aa7.48□□□□□ -1.21
UPF3A-205ENST00000479712 EPHX1P07099 455 aa7.48□□□□□ -1.21
UPF3A-205ENST00000479712 COL8A1P27658 744 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms