RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 KIF18AQ8NI77 898 aa10.74□□□□□ -0.69
CUX1-206ENST00000437600 TNFRSF25Q93038 417 aa10.74□□□□□ -0.69
CUX1-206ENST00000437600 BRMS1Q9HCU9 246 aa10.74□□□□□ -0.69
CUX1-206ENST00000437600 GDAQ9Y2T3 454 aa10.74□□□□□ -0.69
CUX1-206ENST00000437600 ECM29Q5VYK3 1845 aa10.73□□□□□ -0.69
CUX1-206ENST00000437600 NEMFO60524 1076 aa10.73□□□□□ -0.69
CUX1-206ENST00000437600 PFKFB3Q16875 520 aaPredicted RBP10.73□□□□□ -0.69
CUX1-206ENST00000437600 VPS16Q9H269 839 aa10.73□□□□□ -0.69
CUX1-206ENST00000437600 IMPACTQ9P2X3 320 aa10.73□□□□□ -0.69
CUX1-206ENST00000437600 PAXBP1Q9Y5B6 917 aa10.73□□□□□ -0.69
CUX1-206ENST00000437600 FRMPD2Q68DX3 1309 aaPredicted RBP10.73□□□□□ -0.69
CUX1-206ENST00000437600 MPHOSPH10O00566 681 aaKnown RBP10.73□□□□□ -0.69
CUX1-206ENST00000437600 SLFN14P0C7P3 912 aa10.73□□□□□ -0.69
CUX1-206ENST00000437600 PCP11498 1178 aaKnown RBP10.73□□□□□ -0.69
CUX1-206ENST00000437600 RRAGBQ5VZM2 374 aa10.73□□□□□ -0.69
CUX1-206ENST00000437600 CDC42EP5Q6NZY7 148 aa10.73□□□□□ -0.69
CUX1-206ENST00000437600 ZSCAN29Q8IWY8 852 aaPredicted RBP10.73□□□□□ -0.69
CUX1-206ENST00000437600 GJA10Q969M2 543 aa10.73□□□□□ -0.69
CUX1-206ENST00000437600 RBM28Q9NW13 759 aaKnown RBP10.73□□□□□ -0.69
CUX1-206ENST00000437600 MAD2L2Q9UI95 211 aa10.73□□□□□ -0.69
CUX1-206ENST00000437600 HOOK1Q9UJC3 728 aaKnown RBP10.73□□□□□ -0.69
CUX1-206ENST00000437600 GAKO14976 1311 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 MYH6P13533 1939 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 TRIM49BA6NDI0 452 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 DDAH1O94760 285 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 ABL1P00519 1130 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 AKR1B1P15121 316 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 WWC2Q6AWC2 1192 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 MTA3Q9BTC8 594 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 ZSWIM4Q9H7M6 989 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 CTNND2Q9UQB3 1225 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 CD2APQ9Y5K6 639 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 FER1L6Q2WGJ9 1857 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 SOWAHDA6NJG2 315 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 KLRF2D3W0D1 207 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 RNF225M0QZC1 329 aaPredicted RBP10.72□□□□□ -0.69
CUX1-206ENST00000437600 URI1O94763 535 aaPredicted RBP10.72□□□□□ -0.69
CUX1-206ENST00000437600 TFRCP02786 760 aaKnown RBP10.72□□□□□ -0.69
CUX1-206ENST00000437600 LETM2Q2VYF4 491 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 APOBEC3HQ6NTF7 200 aaKnown RBP10.72□□□□□ -0.69
CUX1-206ENST00000437600 BLIDQ8IZY5 108 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 MLKLQ8NB16 471 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 HPS3Q969F9 1004 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 TEKT1Q969V4 418 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 SYT17Q9BSW7 474 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 TAOK3Q9H2K8 898 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 LZTFL1Q9NQ48 299 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 RNF216Q9NWF9 866 aaPredicted RBP10.72□□□□□ -0.69
CUX1-206ENST00000437600 CENPFP49454 3210 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 CDK5RAP2Q96SN8 1893 aa10.72□□□□□ -0.69
CUX1-206ENST00000437600 PSMD14O00487 310 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 CALM1P0DP23 149 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 CALM2P0DP24 149 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 CALM3P0DP25 149 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 CRKP46108 304 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 RBL2Q08999 1139 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 JAKMIP3Q5VZ66 844 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 C16orf86Q6ZW13 317 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 SLF2Q8IX21 1173 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 TC2NQ8N9U0 490 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 ZNF579Q8NAF0 562 aaKnown RBP10.71□□□□□ -0.69
CUX1-206ENST00000437600 BAG1Q99933 345 aaPredicted RBP10.71□□□□□ -0.69
CUX1-206ENST00000437600 BIN2Q9UBW5 565 aaPredicted RBP10.71□□□□□ -0.69
CUX1-206ENST00000437600 CCDC194A0A1B0GVG4 234 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 PPP1R3GB7ZBB8 358 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 PLCG2P16885 1265 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 ZNF18P17022 549 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 DACT2Q5SW24 774 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 ARHGAP27Q6ZUM4 889 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 PODNQ7Z5L7 613 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 DGKHQ86XP1 1220 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 RTKN2Q8IZC4 609 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 CCDC150Q8NCX0 1101 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 LRRC15Q8TF66 581 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 WDR24Q96S15 920 aa10.71□□□□□ -0.69
CUX1-206ENST00000437600 NID2Q14112 1375 aa10.71□□□□□ -0.7
CUX1-206ENST00000437600 USP17L5A8MUK1 530 aa10.71□□□□□ -0.7
CUX1-206ENST00000437600 ATP2C1P98194 919 aaPredicted RBP10.71□□□□□ -0.7
CUX1-206ENST00000437600 NT5DC1Q5TFE4 455 aa10.71□□□□□ -0.7
CUX1-206ENST00000437600 SPECC1LQ69YQ0 1117 aa10.71□□□□□ -0.7
CUX1-206ENST00000437600 ENOX1Q8TC92 643 aaKnown RBP10.71□□□□□ -0.7
CUX1-206ENST00000437600 ANKRD7Q92527 254 aa10.71□□□□□ -0.7
CUX1-206ENST00000437600 FAM163AQ96GL9 167 aaPredicted RBP10.71□□□□□ -0.7
CUX1-206ENST00000437600 TMEM260Q9NX78 707 aa10.71□□□□□ -0.7
CUX1-206ENST00000437600 NKRFO15226 690 aaKnown RBP eCLIP10.7□□□□□ -0.76e-7■■■□□ 16.5
CUX1-206ENST00000437600 KIF5BP33176 963 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 PMS1P54277 932 aaKnown RBP10.7□□□□□ -0.7
CUX1-206ENST00000437600 PPP2R5BQ15173 497 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 TMEM139Q8IV31 216 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 REXO1L1PQ8IX06 675 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 COA7Q96BR5 231 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 GTPBP4Q9BZE4 634 aaKnown RBP10.7□□□□□ -0.7
CUX1-206ENST00000437600 TDRD3Q9H7E2 651 aaKnown RBP10.7□□□□□ -0.7
CUX1-206ENST00000437600 PCDHA6Q9UN73 950 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 PCDHA8Q9Y5H6 950 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 VGLL3A8MV65 326 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 CBFA2T2O43439 604 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 CASP14P31944 242 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 RCAN1P53805 252 aa10.7□□□□□ -0.7
CUX1-206ENST00000437600 NR1I3Q14994 352 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 109.1 ms