RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 FEZ2Q9UHY8 353 aaPredicted RBP14.26□□□□□ -0.13
SHMT1-205ENST00000395684 LCMT1Q9UIC8 334 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 SAR1BQ9Y6B6 198 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 TAF1P21675 1872 aa14.25□□□□□ -0.13
SHMT1-205ENST00000395684 RCCD1A6NED2 376 aa14.25□□□□□ -0.13
SHMT1-205ENST00000395684 RHOBTB3O94955 611 aa14.25□□□□□ -0.13
SHMT1-205ENST00000395684 ADAMTS2O95450 1211 aa14.25□□□□□ -0.13
SHMT1-205ENST00000395684 KLK7P49862 253 aa14.25□□□□□ -0.13
SHMT1-205ENST00000395684 SF3B3Q15393 1217 aaKnown RBP14.25□□□□□ -0.13
SHMT1-205ENST00000395684 SLC35G1Q2M3R5 365 aa14.25□□□□□ -0.13
SHMT1-205ENST00000395684 PAPD7Q5XG87 772 aaKnown RBP14.25□□□□□ -0.13
SHMT1-205ENST00000395684 RASSF8Q8NHQ8 419 aa14.25□□□□□ -0.13
SHMT1-205ENST00000395684 DUSP9Q99956 384 aaKnown RBP14.25□□□□□ -0.13
SHMT1-205ENST00000395684 TTYH3Q9C0H2 523 aa14.25□□□□□ -0.13
SHMT1-205ENST00000395684 LACRTQ9GZZ8 138 aa14.25□□□□□ -0.13
SHMT1-205ENST00000395684 ATP8A2Q9NTI2 1148 aa14.25□□□□□ -0.13
SHMT1-205ENST00000395684 PCDHA6Q9UN73 950 aa14.25□□□□□ -0.13
SHMT1-205ENST00000395684 PCDHA8Q9Y5H6 950 aa14.25□□□□□ -0.13
SHMT1-205ENST00000395684 MEA1Q16626 185 aa14.25□□□□□ -0.13
SHMT1-205ENST00000395684 INF2Q27J81 1249 aa14.25□□□□□ -0.13
SHMT1-205ENST00000395684 SH3GLB2Q9NR46 395 aa14.25□□□□□ -0.13
SHMT1-205ENST00000395684 MYH13Q9UKX3 1938 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 A0A1B0GUL6 1792 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 CCDC194A0A1B0GVG4 234 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 USP17L8P0C7I0 530 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 SRGNP10124 158 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 UBA7P41226 1012 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 DNM2P50570 870 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 TFAP4Q01664 338 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 TSR1Q2NL82 804 aaKnown RBP14.24□□□□□ -0.13
SHMT1-205ENST00000395684 SBK1Q52WX2 424 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 FAM71BQ8TC56 605 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 TUBGCP2Q9BSJ2 902 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 KAT14Q9H8E8 782 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 TFCP2L1Q9NZI6 479 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 ARPP21Q9UBL0 812 aaPredicted RBP14.24□□□□□ -0.13
SHMT1-205ENST00000395684 COL22A1Q8NFW1 1626 aaPredicted RBP14.24□□□□□ -0.13
SHMT1-205ENST00000395684 MYH14Q7Z406 1995 aaKnown RBP14.24□□□□□ -0.13
SHMT1-205ENST00000395684 PSMA7O14818 248 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 NKRFO15226 690 aaKnown RBP eCLIP14.24□□□□□ -0.13
SHMT1-205ENST00000395684 PNMA1Q8ND90 353 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 CAPZA3Q96KX2 299 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 CCSER1Q9C0I3 900 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 MCM9Q9NXL9 1143 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 JAG2Q9Y219 1238 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 DUSP10Q9Y6W6 482 aa14.24□□□□□ -0.13
SHMT1-205ENST00000395684 CYTH3O43739 400 aa14.23□□□□□ -0.13
SHMT1-205ENST00000395684 HSP90B2PQ58FF3 399 aa14.23□□□□□ -0.13
SHMT1-205ENST00000395684 ZNF662Q6ZS27 426 aa14.23□□□□□ -0.13
SHMT1-205ENST00000395684 CSGALNACT2Q8N6G5 542 aa14.23□□□□□ -0.13
SHMT1-205ENST00000395684 MAGEC2Q9UBF1 373 aaPredicted RBP14.23□□□□□ -0.13
SHMT1-205ENST00000395684 MAD2L2Q9UI95 211 aa14.23□□□□□ -0.13
SHMT1-205ENST00000395684 DOT1LQ8TEK3 1739 aa14.23□□□□□ -0.13
SHMT1-205ENST00000395684 KRT83P78385 493 aa14.23□□□□□ -0.13
SHMT1-205ENST00000395684 STIM1Q13586 685 aa14.23□□□□□ -0.13
SHMT1-205ENST00000395684 FOXR1Q6PIV2 292 aa14.23□□□□□ -0.13
SHMT1-205ENST00000395684 JAKMIP2Q96AA8 810 aa14.23□□□□□ -0.13
SHMT1-205ENST00000395684 NHEJ1Q9H9Q4 299 aaPredicted RBP14.23□□□□□ -0.13
SHMT1-205ENST00000395684 EXOC1Q9NV70 894 aa14.23□□□□□ -0.13
SHMT1-205ENST00000395684 CWC15Q9P013 229 aaKnown RBP14.23□□□□□ -0.13
SHMT1-205ENST00000395684 ZNF185O15231 689 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 ZMYND10O75800 440 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 SYF2O95926 243 aaKnown RBP14.22□□□□□ -0.13
SHMT1-205ENST00000395684 MYL1P05976 194 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 TRIM21P19474 475 aaKnown RBP14.22□□□□□ -0.13
SHMT1-205ENST00000395684 ANKRD40Q6AI12 368 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 LEKR1Q6ZMV7 388 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 KIAA1328Q86T90 577 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 DGKHQ86XP1 1220 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 DYNLL2Q96FJ2 89 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 LAMB2P55268 1798 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 SCN7AQ01118 1682 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 PDE2AO00408 941 aaPredicted RBP14.22□□□□□ -0.13
SHMT1-205ENST00000395684 TRIM66O15016 1216 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 KRT86O43790 486 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 GTF2E1P29083 439 aaPredicted RBP14.22□□□□□ -0.13
SHMT1-205ENST00000395684 CYP27A1Q02318 531 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 TBC1D8BQ0IIM8 1120 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 STK4Q13043 487 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 DHTKD1Q96HY7 919 aaPredicted RBP14.22□□□□□ -0.13
SHMT1-205ENST00000395684 MED4Q9NPJ6 270 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 ZNF652Q9Y2D9 606 aa14.22□□□□□ -0.13
SHMT1-205ENST00000395684 FLT1P17948 1338 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 USP17L3A6NCW0 530 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 USP17L4A6NCW7 530 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 MYO1CO00159 1063 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 HIBADHP31937 336 aaKnown RBP14.21□□□□□ -0.13
SHMT1-205ENST00000395684 SLC20A2Q08357 652 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 GRM4Q14833 912 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 BICDL1Q6ZP65 573 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 USP17L1Q7RTZ2 530 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 HEATR3Q7Z4Q2 680 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 GDAP1L1Q96MZ0 367 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 FAM204AQ9H8W3 233 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 VIPAS39Q9H9C1 493 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 ZC3H4Q9UPT8 1303 aaKnown RBP14.21□□□□□ -0.13
SHMT1-205ENST00000395684 EIF3CLB5ME19 914 aaKnown RBP14.21□□□□□ -0.13
SHMT1-205ENST00000395684 PLCG1P19174 1290 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 CYLC1P35663 651 aaPredicted RBP14.21□□□□□ -0.13
SHMT1-205ENST00000395684 AARSP49588 968 aaKnown RBP eCLIP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms