RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ARMC9Q7Z3E5 817 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 ABCA6Q8N139 1617 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 SMC1BQ8NDV3 1235 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 ATG3Q9NT62 314 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 CTTNBP2NLQ9P2B4 639 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 TNKSO95271 1327 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 NDC80O14777 642 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 OPHN1O60890 802 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 MYCNP04198 464 aaPredicted RBP12.67□□□□□ -0.38
VPS39-201ENST00000318006 CYP21A2P08686 494 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 DNM2P50570 870 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 KIFAP3Q92845 792 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 FAM207AQ9NSI2 230 aaPredicted RBP12.67□□□□□ -0.38
VPS39-201ENST00000318006 CCDC169A6NNP5 214 aa12.66□□□□□ -0.38
VPS39-201ENST00000318006 PFDN1O60925 122 aa12.66□□□□□ -0.38
VPS39-201ENST00000318006 MAP3K21Q5TCX8 1036 aa12.66□□□□□ -0.38
VPS39-201ENST00000318006 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.66□□□□□ -0.38
VPS39-201ENST00000318006 HEG1Q9ULI3 1381 aa12.66□□□□□ -0.38
VPS39-201ENST00000318006 IKBKBO14920 756 aa12.66□□□□□ -0.38
VPS39-201ENST00000318006 SUN1O94901 812 aa12.66□□□□□ -0.38
VPS39-201ENST00000318006 ALDH1B1P30837 517 aa12.66□□□□□ -0.38
VPS39-201ENST00000318006 RAD51AP2Q09MP3 1159 aa12.66□□□□□ -0.38
VPS39-201ENST00000318006 ZKSCAN8Q15776 578 aaPredicted RBP12.66□□□□□ -0.38
VPS39-201ENST00000318006 SPATA1Q5VX52 437 aa12.66□□□□□ -0.38
VPS39-201ENST00000318006 SNX29Q8TEQ0 813 aa12.66□□□□□ -0.38
VPS39-201ENST00000318006 VCX3AQ9NNX9 186 aa12.66□□□□□ -0.38
VPS39-201ENST00000318006 BCAP29Q9UHQ4 241 aa12.66□□□□□ -0.38
VPS39-201ENST00000318006 ADAM21Q9UKJ8 722 aa12.66□□□□□ -0.38
VPS39-201ENST00000318006 GLI2P10070 1586 aa12.66□□□□□ -0.38
VPS39-201ENST00000318006 ADGRB3O60242 1522 aa12.66□□□□□ -0.38
VPS39-201ENST00000318006 PTPN12Q05209 780 aaKnown RBP12.66□□□□□ -0.38
VPS39-201ENST00000318006 ZNF589Q86UQ0 364 aaPredicted RBP12.66□□□□□ -0.38
VPS39-201ENST00000318006 REXO1Q8N1G1 1221 aaKnown RBP12.66□□□□□ -0.38
VPS39-201ENST00000318006 TCP11Q8WWU5 503 aa12.66□□□□□ -0.38
VPS39-201ENST00000318006 DDX27Q96GQ7 796 aaKnown RBP12.66□□□□□ -0.38
VPS39-201ENST00000318006 KRIT1O00522 736 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 GTF2IP78347 998 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 CASP8Q14790 479 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 MSANTD4Q8NCY6 345 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 PDLIM2Q96JY6 352 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 AMFRQ9UKV5 643 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 KCNK3O14649 394 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 NDUFA8P51970 172 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 SCRN1Q12765 414 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 MORC3Q14149 939 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 MED23Q9ULK4 1368 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 BACH1O14867 736 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 GAS8O95995 478 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 ARL1P40616 181 aaPredicted RBP12.65□□□□□ -0.38
VPS39-201ENST00000318006 COG7P83436 770 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 GUCY2DQ02846 1103 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 GMNNO75496 209 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 TRPC3Q13507 836 aa12.65□□□□□ -0.38
VPS39-201ENST00000318006 C11orf57Q6ZUT1 292 aaPredicted RBP12.65□□□□□ -0.38
VPS39-201ENST00000318006 CMTR1Q8N1G2 835 aaKnown RBP12.65□□□□□ -0.38
VPS39-201ENST00000318006 MORC2Q9Y6X9 1032 aaPredicted RBP12.65□□□□□ -0.38
VPS39-201ENST00000318006 CALUO43852 315 aaPredicted RBP12.64□□□□□ -0.39
VPS39-201ENST00000318006 CALCRLQ16602 461 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 LGSNQ5TDP6 509 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 USPL1Q5W0Q7 1092 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 LARGE2Q8N3Y3 721 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 SUPT20HQ8NEM7 779 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 MAIP1Q8WWC4 291 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 STAMQ92783 540 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 BLZF1Q9H2G9 400 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 EIF3CLB5ME19 914 aaKnown RBP12.64□□□□□ -0.39
VPS39-201ENST00000318006 CHUKO15111 745 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 ATP2B4P23634 1241 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 GUCY2CP25092 1073 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 SESN3P58005 492 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 TCP10Q12799 353 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 EIF3CQ99613 913 aaKnown RBP12.64□□□□□ -0.39
VPS39-201ENST00000318006 PKD2L1Q9P0L9 805 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 SASH1O94885 1247 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 CABP7Q86V35 215 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 GPIHBP1Q8IV16 184 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 P3H4Q92791 437 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 Q9H521 79 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 NLRC4Q9NPP4 1024 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 KIDINS220Q9ULH0 1771 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 LMTK2Q8IWU2 1503 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 ALKQ9UM73 1620 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 H7C1D1 291 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 CHMP2AO43633 222 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 HSP90AA5PQ58FG0 334 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 USP40Q9NVE5 1235 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 FAF1Q9UNN5 650 aaPredicted RBP12.64□□□□□ -0.39
VPS39-201ENST00000318006 DIP2CQ9Y2E4 1556 aa12.64□□□□□ -0.39
VPS39-201ENST00000318006 PABPN1LA6NDY0 278 aaKnown RBP12.63□□□□□ -0.39
VPS39-201ENST00000318006 PCP11498 1178 aaKnown RBP12.63□□□□□ -0.39
VPS39-201ENST00000318006 SP4Q02446 784 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 PSMD6Q15008 389 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 NLRP10Q86W26 655 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 PNMA1Q8ND90 353 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 GSDMBQ8TAX9 411 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 INTS9Q9NV88 658 aaKnown RBP12.63□□□□□ -0.39
VPS39-201ENST00000318006 STK24Q9Y6E0 443 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 SMCO2A6NFE2 343 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 EVI5O60447 810 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 TEKT1Q969V4 418 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms