RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 MAGEC2Q9UBF1 373 aaPredicted RBP16.03■□□□□ 0.16
SDC1-201ENST00000254351 LIMA1Q9UHB6 759 aaKnown RBP16.03■□□□□ 0.16
SDC1-201ENST00000254351 RPN1P04843 607 aaKnown RBP16.03■□□□□ 0.16
SDC1-201ENST00000254351 GUCY2DQ02846 1103 aa16.03■□□□□ 0.16
SDC1-201ENST00000254351 PAPD7Q5XG87 772 aaKnown RBP16.03■□□□□ 0.16
SDC1-201ENST00000254351 POTEDQ86YR6 584 aa16.03■□□□□ 0.16
SDC1-201ENST00000254351 C2CD5Q86YS7 1000 aa16.03■□□□□ 0.16
SDC1-201ENST00000254351 MSL3Q8N5Y2 521 aaKnown RBP16.03■□□□□ 0.16
SDC1-201ENST00000254351 AENQ8WTP8 325 aaKnown RBP16.03■□□□□ 0.16
SDC1-201ENST00000254351 GREM2Q9H772 168 aa16.03■□□□□ 0.16
SDC1-201ENST00000254351 GPR108Q9NPR9 543 aa16.03■□□□□ 0.16
SDC1-201ENST00000254351 ABCA3Q99758 1704 aa16.03■□□□□ 0.16
SDC1-201ENST00000254351 KRT2P35908 639 aa16.02■□□□□ 0.16
SDC1-201ENST00000254351 KRT83P78385 493 aa16.02■□□□□ 0.16
SDC1-201ENST00000254351 SPA17Q15506 151 aa16.02■□□□□ 0.16
SDC1-201ENST00000254351 TTC38Q5R3I4 469 aa16.02■□□□□ 0.16
SDC1-201ENST00000254351 AKNAD1Q5T1N1 836 aa16.02■□□□□ 0.16
SDC1-201ENST00000254351 RBM12Q9NTZ6 932 aaKnown RBP16.02■□□□□ 0.16
SDC1-201ENST00000254351 AATFQ9NY61 560 aaKnown RBP eCLIP16.02■□□□□ 0.16
SDC1-201ENST00000254351 PATL2C9JE40 543 aaKnown RBP16.02■□□□□ 0.15
SDC1-201ENST00000254351 C8orf74Q6P047 294 aa16.02■□□□□ 0.15
SDC1-201ENST00000254351 CREG2Q8IUH2 290 aa16.02■□□□□ 0.15
SDC1-201ENST00000254351 IFNL2Q8IZJ0 200 aa16.02■□□□□ 0.15
SDC1-201ENST00000254351 NOC3LQ8WTT2 800 aaKnown RBP16.02■□□□□ 0.15
SDC1-201ENST00000254351 EPB41L5Q9HCM4 733 aa16.02■□□□□ 0.15
SDC1-201ENST00000254351 COL18A1P39060 1754 aa16.02■□□□□ 0.15
SDC1-201ENST00000254351 NWD2Q9ULI1 1742 aa16.02■□□□□ 0.15
SDC1-201ENST00000254351 ZNF263O14978 683 aa16.01■□□□□ 0.15
SDC1-201ENST00000254351 MEFVO15553 781 aaPredicted RBP16.01■□□□□ 0.15
SDC1-201ENST00000254351 OPA1O60313 960 aa16.01■□□□□ 0.15
SDC1-201ENST00000254351 LSP1P33241 339 aa16.01■□□□□ 0.15
SDC1-201ENST00000254351 CYLC1P35663 651 aaPredicted RBP16.01■□□□□ 0.15
SDC1-201ENST00000254351 MTIF2P46199 727 aaKnown RBP16.01■□□□□ 0.15
SDC1-201ENST00000254351 GSCP56915 257 aaPredicted RBP16.01■□□□□ 0.15
SDC1-201ENST00000254351 PPP2R5AQ15172 486 aa16.01■□□□□ 0.15
SDC1-201ENST00000254351 NAA35Q5VZE5 725 aa16.01■□□□□ 0.15
SDC1-201ENST00000254351 OVOS2A0A0G2JMS6 1433 aa16.01■□□□□ 0.15
SDC1-201ENST00000254351 STAT6P42226 847 aa16.01■□□□□ 0.15
SDC1-201ENST00000254351 CFAP58Q5T655 872 aa16.01■□□□□ 0.15
SDC1-201ENST00000254351 SGMS1Q86VZ5 419 aa16.01■□□□□ 0.15
SDC1-201ENST00000254351 LCORLQ8N3X6 602 aa16.01■□□□□ 0.15
SDC1-201ENST00000254351 ZNF579Q8NAF0 562 aaKnown RBP16.01■□□□□ 0.15
SDC1-201ENST00000254351 ZKSCAN4Q969J2 545 aaPredicted RBP16.01■□□□□ 0.15
SDC1-201ENST00000254351 CCDC114Q96M63 670 aa16.01■□□□□ 0.15
SDC1-201ENST00000254351 IFIH1Q9BYX4 1025 aaKnown RBP16.01■□□□□ 0.15
SDC1-201ENST00000254351 RWDD2AQ9UIY3 292 aa16.01■□□□□ 0.15
SDC1-201ENST00000254351 GLI1P08151 1106 aa16.01■□□□□ 0.15
SDC1-201ENST00000254351 ITGA6P23229 1130 aa16.01■□□□□ 0.15
SDC1-201ENST00000254351 ARID5AQ03989 594 aa16.01■□□□□ 0.15
SDC1-201ENST00000254351 TBC1D31Q96DN5 1066 aa16.01■□□□□ 0.15
SDC1-201ENST00000254351 KDM6AO15550 1401 aaPredicted RBP16■□□□□ 0.15
SDC1-201ENST00000254351 ITIH6Q6UXX5 1313 aa16■□□□□ 0.15
SDC1-201ENST00000254351 TARSL2A2RTX5 802 aaKnown RBP16■□□□□ 0.15
SDC1-201ENST00000254351 AKR1B10O60218 316 aa16■□□□□ 0.15
SDC1-201ENST00000254351 CSGALNACT2Q8N6G5 542 aa16■□□□□ 0.15
SDC1-201ENST00000254351 PRPF38AQ8NAV1 312 aaKnown RBP16■□□□□ 0.15
SDC1-201ENST00000254351 GOLGA8KD6RF30 607 aa16■□□□□ 0.15
SDC1-201ENST00000254351 PPP1R12BO60237 982 aaPredicted RBP16■□□□□ 0.15
SDC1-201ENST00000254351 CDR1P51861 262 aa16■□□□□ 0.15
SDC1-201ENST00000254351 IL17AQ16552 155 aa16■□□□□ 0.15
SDC1-201ENST00000254351 SPRED3Q2MJR0 410 aa16■□□□□ 0.15
SDC1-201ENST00000254351 KLHL7Q8IXQ5 586 aa16■□□□□ 0.15
SDC1-201ENST00000254351 CNPY4Q8N129 248 aa16■□□□□ 0.15
SDC1-201ENST00000254351 TUBGCP2Q9BSJ2 902 aa16■□□□□ 0.15
SDC1-201ENST00000254351 MMRN2Q9H8L6 949 aa16■□□□□ 0.15
SDC1-201ENST00000254351 ABCF2Q9UG63 623 aa16■□□□□ 0.15
SDC1-201ENST00000254351 UBAP1LF5GYI3 381 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 CHRM1P11229 460 aaPredicted RBP15.99■□□□□ 0.15
SDC1-201ENST00000254351 TMOD1P28289 359 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 NF2P35240 595 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 HLTFQ14527 1009 aaKnown RBP eCLIP15.99■□□□□ 0.15
SDC1-201ENST00000254351 CCDC178Q5BJE1 867 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 ODF2Q5BJF6 829 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 SH3RF1Q7Z6J0 888 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 KLC4Q9NSK0 619 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 SNX12Q9UMY4 172 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 TNKSO95271 1327 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 RGPD5Q99666 1765 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 NMT2O60551 498 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 RASSF7Q02833 373 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 EVX2Q03828 476 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 SPAG1Q07617 926 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 CEP85LQ5SZL2 805 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 DNAAF5Q86Y56 855 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 CCDC13Q8IYE1 715 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 ZNF473Q8WTR7 871 aaKnown RBP15.99■□□□□ 0.15
SDC1-201ENST00000254351 OSBPL9Q96SU4 736 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 STIM2Q9P246 746 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 PHLPP1O60346 1717 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 GOLGA6L7A0A1B0GV03 622 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 ZNF233A6NK53 670 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 OPLAHO14841 1288 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 NEBLO76041 1014 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 XBP1P17861 261 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 PAX7P23759 505 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 LIFRP42702 1097 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 NLRP5P59047 1200 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 CCDC40Q4G0X9 1142 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 B4GALNT4Q76KP1 1039 aa15.99■□□□□ 0.15
SDC1-201ENST00000254351 CCT8L2Q96SF2 557 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 120.5 ms