RNA–Protein interactions for RNA: ENST00000614526.1

LIG4-205, Transcript of DNA ligase 4, humanhuman

TSL 2 BASIC

Gene LIG4, Length 3,884 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-205ENST00000614526 PCDHA4Q9UN74 947 aa3.93□□□□□ -1.78
LIG4-205ENST00000614526 PCDHA8Q9Y5H6 950 aa3.93□□□□□ -1.78
LIG4-205ENST00000614526 PCDHA5Q9Y5H7 936 aa3.93□□□□□ -1.78
LIG4-205ENST00000614526 ROBO3Q96MS0 1386 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 SPDYE2BA6NHP3 402 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 CCNT1O60563 726 aaKnown RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 SPDYE6P0CI01 402 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 IL17AQ16552 155 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 STX1AQ16623 288 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 ABCB5Q2M3G0 1257 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 CCDC178Q5BJE1 867 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 SLFN13Q68D06 897 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 TMED8Q6PL24 325 aaPredicted RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 METTL16Q86W50 562 aaKnown RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 CREBRFQ8IUR6 639 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 ACER1Q8TDN7 264 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 ANKS1AQ92625 1134 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 TNFRSF25Q93038 417 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 TAOK3Q9H2K8 898 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 EIF4ENIF1Q9NRA8 985 aaKnown RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 BARHL2Q9NY43 387 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 ZNF70Q9UC06 446 aaPredicted RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 HDAC9Q9UKV0 1011 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 NID2Q14112 1375 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 TNS1Q9HBL0 1735 aaKnown RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 A0A1W2PRG0 241 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 USP17L15C9J2P7 530 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 USP17L13C9JLJ4 530 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 USP17L11C9JVI0 530 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 USP17L18D6R9N7 530 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 USP17L22D6RA61 530 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 USP17L17D6RBQ6 530 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 USP17L19D6RCP7 530 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 USP17L20D6RJB6 530 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 F5H6K3 240 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 NFKBIEO00221 500 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 CTAGE5O15320 804 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 LMOD1P29536 600 aaPredicted RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 TNNI2P48788 182 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 KLRC3Q07444 240 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 USP17L24Q0WX57 530 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 DGKZQ13574 1117 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 PRKG1Q13976 671 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 KLHL10Q6JEL2 608 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 USP17L6PQ6QN14 398 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 DLK2Q6UY11 383 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 KRBA2Q6ZNG9 492 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 RBM43Q6ZSC3 357 aaKnown RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 SIAH1Q8IUQ4 282 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 SMYD4Q8IYR2 804 aaPredicted RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 SLC16A10Q8TF71 515 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 CNKSR2Q8WXI2 1034 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 JMJD4Q9H9V9 463 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 ANO10Q9NW15 660 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 SWAP70Q9UH65 585 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 SRPRBQ9Y5M8 271 aaKnown RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 TMEM232C9JQI7 657 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 WNT10BO00744 389 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 PPP1R11O60927 126 aaPredicted RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 VIL1P09327 827 aaKnown RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 MSNP26038 577 aaKnown RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 CALML3P27482 149 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 ZNF543Q08ER8 600 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 KARSQ15046 597 aaKnown RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 CIAPIN1Q6FI81 312 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 FILIP1Q7Z7B0 1213 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 TRMT44Q8IYL2 757 aaKnown RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 CEP57L1Q8IYX8 460 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 TBCKQ8TEA7 893 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 PDLIM2Q96JY6 352 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 IDI2Q9BXS1 227 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 GLIS2Q9BZE0 524 aaPredicted RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 MTFR1LQ9H019 292 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 DHX36Q9H2U1 1008 aaKnown RBP3.92□□□□□ -1.78
LIG4-205ENST00000614526 CEP131Q9UPN4 1083 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 MAPK8IP1Q9UQF2 711 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 HPSEQ9Y251 543 aa3.92□□□□□ -1.78
LIG4-205ENST00000614526 KIAA1551Q9HCM1 1747 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 TECP42680 631 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 TXKP42681 527 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 PRELPP51888 382 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 STX17P56962 302 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 ARID5BQ14865 1188 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 IQCB1Q15051 598 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 UVSSAQ2YD98 709 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 DHX40Q8IX18 779 aaKnown RBP3.91□□□□□ -1.78
LIG4-205ENST00000614526 PSMD1Q99460 953 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 SPZ1Q9BXG8 430 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 KANSL2Q9H9L4 492 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 C6orf50Q9HD87 102 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.91□□□□□ -1.78
LIG4-205ENST00000614526 COL4A5P29400 1685 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 MYH1P12882 1939 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 C10orf71Q711Q0 1435 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 IGKV6D-41A0A0C4DH26 115 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 SMC2O95347 1197 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 TDP2O95551 362 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 NDUFB10O96000 172 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 ATP1A3P13637 1013 aa3.91□□□□□ -1.78
LIG4-205ENST00000614526 BMP6P22004 513 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms