RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 IQCF2Q8IXL9 164 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 ZSCAN10Q96SZ4 725 aaPredicted RBP11.62□□□□□ -0.55
LIG1-220ENST00000601091 TUBB2BQ9BVA1 445 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 ABCC12Q96J65 1359 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 PXDNQ92626 1479 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 ARHGAP23Q9P227 1491 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 A0A0G2JLW4 131 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 EFCAB8A8MWE9 144 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 ERCC5P28715 1186 aaPredicted RBP11.61□□□□□ -0.55
LIG1-220ENST00000601091 LMAN1P49257 510 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 KRT83P78385 493 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 GSTO1P78417 241 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 RNF26Q9BY78 433 aaPredicted RBP11.61□□□□□ -0.55
LIG1-220ENST00000601091 NACA2Q9H009 215 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 GUCA1BQ9UMX6 200 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 ERVV-1B6SEH8 477 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 USP17L12C9JPN9 530 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 USP17L21D6R901 530 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 CTIFO43310 598 aaKnown RBP11.61□□□□□ -0.55
LIG1-220ENST00000601091 PRKAB2O43741 272 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 NF2P35240 595 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 PLCD1P51178 756 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 NR5A1Q13285 461 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 PDCD2Q16342 344 aaPredicted RBP11.61□□□□□ -0.55
LIG1-220ENST00000601091 SPATA1Q5VX52 437 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 RESP18Q5W5W9 173 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 VSTM4Q8IW00 320 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 ENOX1Q8TC92 643 aaKnown RBP11.61□□□□□ -0.55
LIG1-220ENST00000601091 SMCR8Q8TEV9 937 aaPredicted RBP11.61□□□□□ -0.55
LIG1-220ENST00000601091 TSG101Q99816 390 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 MAPK8IP1Q9UQF2 711 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 ANKRD65E5RJM6 399 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 PHACTR2O75167 634 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 CHMP4BP1P59074 171 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 IFT88Q13099 833 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 PAK1Q13153 545 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 TRIM14Q14142 442 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 RSPH1Q8WYR4 309 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 ANKRD2Q9GZV1 360 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 CSRNP2Q9H175 543 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 JADE2Q9NQC1 790 aa11.61□□□□□ -0.55
LIG1-220ENST00000601091 HMGB1P1B2RPK0 211 aaPredicted RBP11.6□□□□□ -0.55
LIG1-220ENST00000601091 KRT86O43790 486 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 HIBADHP31937 336 aaKnown RBP11.6□□□□□ -0.55
LIG1-220ENST00000601091 PAFAH1B1P43034 410 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 MAGEA8P43361 318 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 ASIC1P78348 528 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 RASGRF1Q13972 1273 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 CRACR2BQ8N4Y2 399 aaPredicted RBP11.6□□□□□ -0.55
LIG1-220ENST00000601091 GPR161Q8N6U8 529 aaKnown RBP11.6□□□□□ -0.55
LIG1-220ENST00000601091 DESI2Q9BSY9 194 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 NYXQ9GZU5 481 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 MAN1B1Q9UKM7 699 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 KIF28PB7ZC32 967 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 CDC27P30260 824 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 KRT9P35527 623 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 TPTE2Q6XPS3 522 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 SLF2Q8IX21 1173 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 CCDC26Q8TAB7 109 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 CDCA7Q9BWT1 371 aaPredicted RBP11.6□□□□□ -0.55
LIG1-220ENST00000601091 CDHR2Q9BYE9 1310 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 GYG1P46976 350 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 NAPAP54920 295 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 CHRNDQ07001 517 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 ALX1Q15699 326 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 CYP26C1Q6V0L0 522 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 LCORLQ8N3X6 602 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 TMCO5AQ8N6Q1 288 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 AGXT2Q9BYV1 514 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 AKAP12Q02952 1782 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 PHLPP2Q6ZVD8 1323 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 AKR1B10O60218 316 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 PTPREP23469 700 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 CKAP4Q07065 602 aaKnown RBP11.6□□□□□ -0.55
LIG1-220ENST00000601091 C11orf91Q3C1V1 193 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 GSDMAQ96QA5 445 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 SEC31BQ9NQW1 1179 aa11.6□□□□□ -0.55
LIG1-220ENST00000601091 AATFQ9NY61 560 aaKnown RBP eCLIP11.6□□□□□ -0.55
LIG1-220ENST00000601091 SRPRBQ9Y5M8 271 aaKnown RBP11.6□□□□□ -0.55
LIG1-220ENST00000601091 RHOXF2BP0C7M4 288 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 PSMC1P62191 440 aaKnown RBP11.59□□□□□ -0.55
LIG1-220ENST00000601091 SGMS1Q86VZ5 419 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 C1orf131Q8NDD1 294 aaKnown RBP11.59□□□□□ -0.55
LIG1-220ENST00000601091 CCDC51Q96ER9 411 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 PLIN2Q99541 437 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 DUSP9Q99956 384 aaKnown RBP11.59□□□□□ -0.55
LIG1-220ENST00000601091 RHOXF2Q9BQY4 288 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 PLA2G12BQ9BX93 195 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 INCENPQ9NQS7 918 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 PCDHB6Q9Y5E3 794 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 BICDL2A1A5D9 508 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 CCZ1BP86790 482 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 CCZ1P86791 482 aaPredicted RBP11.59□□□□□ -0.55
LIG1-220ENST00000601091 SNX1Q13596 522 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 SHC4Q6S5L8 630 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 BRINP3Q76B58 766 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 NAPGQ99747 312 aaPredicted RBP11.59□□□□□ -0.55
LIG1-220ENST00000601091 BLZF1Q9H2G9 400 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 LY9Q9HBG7 655 aa11.59□□□□□ -0.55
LIG1-220ENST00000601091 C6orf50Q9HD87 102 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms