RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 PDE6AP16499 860 aa12.24□□□□□ -0.45
TRIM28-210ENST00000597618 CDK7P50613 346 aa12.24□□□□□ -0.45
TRIM28-210ENST00000597618 MAMDC4Q6UXC1 1216 aa12.24□□□□□ -0.45
TRIM28-210ENST00000597618 ZNF365Q70YC5 407 aa12.24□□□□□ -0.45
TRIM28-210ENST00000597618 SDR42E1Q8WUS8 393 aa12.24□□□□□ -0.45
TRIM28-210ENST00000597618 CCDC17Q96LX7 622 aa12.24□□□□□ -0.45
TRIM28-210ENST00000597618 SLC28A3Q9HAS3 691 aa12.24□□□□□ -0.45
TRIM28-210ENST00000597618 SPC25Q9HBM1 224 aa12.24□□□□□ -0.45
TRIM28-210ENST00000597618 GOPCQ9HD26 462 aa12.24□□□□□ -0.45
TRIM28-210ENST00000597618 FBXO28Q9NVF7 368 aa12.24□□□□□ -0.45
TRIM28-210ENST00000597618 MYADML2A6NDP7 307 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 ZNF316A6NFI3 1004 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-210ENST00000597618 ARVCFO00192 962 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 SNAI1O95863 264 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-210ENST00000597618 ASGR1P07306 291 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 ACRP10323 421 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 CYP2D6P10635 497 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 ZNF467Q7Z7K2 595 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-210ENST00000597618 AACSQ86V21 672 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 FAM126BQ8IXS8 530 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 AMOTL1Q8IY63 956 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 TMEM57Q8N5G2 664 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 REPS2Q8NFH8 660 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 HERVK_113Q902F9 699 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 VTI1AQ96AJ9 217 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 DYNLL2Q96FJ2 89 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 TEX13BQ9BXU2 312 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 PPP1R12CQ9BZL4 782 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 NKX2-4Q9H2Z4 354 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 IL23AQ9NPF7 189 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 PIEZO1Q92508 2521 aa12.23□□□□□ -0.45
TRIM28-210ENST00000597618 REV3LO60673 3130 aa12.22□□□□□ -0.45
TRIM28-210ENST00000597618 MYO9BQ13459 2157 aa12.22□□□□□ -0.45
TRIM28-210ENST00000597618 ZNF532Q9HCE3 1301 aa12.22□□□□□ -0.45
TRIM28-210ENST00000597618 EEF2P13639 858 aaKnown RBP12.22□□□□□ -0.45
TRIM28-210ENST00000597618 HOXD11P31277 338 aaPredicted RBP12.22□□□□□ -0.45
TRIM28-210ENST00000597618 AAK1Q2M2I8 961 aa12.22□□□□□ -0.45
TRIM28-210ENST00000597618 ERC1Q8IUD2 1116 aa12.22□□□□□ -0.45
TRIM28-210ENST00000597618 LCORLQ8N3X6 602 aa12.22□□□□□ -0.45
TRIM28-210ENST00000597618 DDX11Q96FC9 970 aa12.22□□□□□ -0.45
TRIM28-210ENST00000597618 UPF3AQ9H1J1 476 aaKnown RBP12.22□□□□□ -0.45
TRIM28-210ENST00000597618 C1orf115Q9H7X2 142 aa12.22□□□□□ -0.45
TRIM28-210ENST00000597618 KANSL2Q9H9L4 492 aa12.22□□□□□ -0.45
TRIM28-210ENST00000597618 ATP8A2Q9NTI2 1148 aa12.22□□□□□ -0.45
TRIM28-210ENST00000597618 PARP14Q460N5 1801 aa12.22□□□□□ -0.45
TRIM28-210ENST00000597618 TRANK1O15050 2925 aa12.22□□□□□ -0.45
TRIM28-210ENST00000597618 PLXNA1Q9UIW2 1896 aa12.21□□□□□ -0.45
TRIM28-210ENST00000597618 DNAJC25-GNG10A0A024R161 153 aa12.21□□□□□ -0.45
TRIM28-210ENST00000597618 TCRBV5S4A2TA0A5A2 114 aa12.21□□□□□ -0.45
TRIM28-210ENST00000597618 RAD21O60216 631 aa12.21□□□□□ -0.45
TRIM28-210ENST00000597618 FGBP02675 491 aa12.21□□□□□ -0.45
TRIM28-210ENST00000597618 GJA9P57773 515 aa12.21□□□□□ -0.45
TRIM28-210ENST00000597618 ACVR2BQ13705 512 aa12.21□□□□□ -0.45
TRIM28-210ENST00000597618 GNASQ5JWF2 1037 aa12.21□□□□□ -0.45
TRIM28-210ENST00000597618 FAM83BQ5T0W9 1011 aa12.21□□□□□ -0.45
TRIM28-210ENST00000597618 SNRNP48Q6IEG0 339 aaKnown RBP12.21□□□□□ -0.45
TRIM28-210ENST00000597618 SLF1Q9BQI6 1058 aa12.21□□□□□ -0.45
TRIM28-210ENST00000597618 ABHD16BQ9H3Z7 469 aa12.21□□□□□ -0.45
TRIM28-210ENST00000597618 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.21□□□□□ -0.45
TRIM28-210ENST00000597618 YBX2Q9Y2T7 364 aaKnown RBP12.21□□□□□ -0.45
TRIM28-210ENST00000597618 HCN4Q9Y3Q4 1203 aa12.21□□□□□ -0.45
TRIM28-210ENST00000597618 ARIH1Q9Y4X5 557 aaPredicted RBP12.21□□□□□ -0.45
TRIM28-210ENST00000597618 ZNFX1Q9P2E3 1918 aaKnown RBP12.2□□□□□ -0.46
TRIM28-210ENST00000597618 BMP1P13497 986 aa12.2□□□□□ -0.46
TRIM28-210ENST00000597618 CYP2C18P33260 490 aa12.2□□□□□ -0.46
TRIM28-210ENST00000597618 CDK8P49336 464 aa12.2□□□□□ -0.46
TRIM28-210ENST00000597618 CCDC144BQ3MJ40 725 aa12.2□□□□□ -0.46
TRIM28-210ENST00000597618 ZKSCAN2Q63HK3 967 aa12.2□□□□□ -0.46
TRIM28-210ENST00000597618 PPP2R2DQ66LE6 453 aa12.2□□□□□ -0.46
TRIM28-210ENST00000597618 C16orf86Q6ZW13 317 aa12.2□□□□□ -0.46
TRIM28-210ENST00000597618 MICALL1Q8N3F8 863 aa12.2□□□□□ -0.46
TRIM28-210ENST00000597618 DDRGK1Q96HY6 314 aa12.2□□□□□ -0.46
TRIM28-210ENST00000597618 NECAB3Q96P71 396 aaPredicted RBP12.2□□□□□ -0.46
TRIM28-210ENST00000597618 HIPK3Q9H422 1215 aa12.2□□□□□ -0.46
TRIM28-210ENST00000597618 ARMT1Q9H993 441 aa12.2□□□□□ -0.46
TRIM28-210ENST00000597618 COL11A1P12107 1806 aaPredicted RBP12.2□□□□□ -0.46
TRIM28-210ENST00000597618 GOLIM4O00461 696 aa12.19□□□□□ -0.46
TRIM28-210ENST00000597618 ATP2A1O14983 1001 aa12.19□□□□□ -0.46
TRIM28-210ENST00000597618 ADCY6O43306 1168 aa12.19□□□□□ -0.46
TRIM28-210ENST00000597618 MBD4O95243 580 aa12.19□□□□□ -0.46
TRIM28-210ENST00000597618 CD4P01730 458 aa12.19□□□□□ -0.46
TRIM28-210ENST00000597618 IRX5P78411 483 aaPredicted RBP12.19□□□□□ -0.46
TRIM28-210ENST00000597618 C12orf60Q5U649 245 aa12.19□□□□□ -0.46
TRIM28-210ENST00000597618 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.19□□□□□ -0.46
TRIM28-210ENST00000597618 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.19□□□□□ -0.46
TRIM28-210ENST00000597618 DNAJC2Q99543 621 aaKnown RBP12.19□□□□□ -0.46
TRIM28-210ENST00000597618 SEZ6LQ9BYH1 1024 aa12.19□□□□□ -0.46
TRIM28-210ENST00000597618 MYH8P13535 1937 aa12.18□□□□□ -0.46
TRIM28-210ENST00000597618 ERC2O15083 957 aa12.18□□□□□ -0.46
TRIM28-210ENST00000597618 PRKAB2O43741 272 aa12.18□□□□□ -0.46
TRIM28-210ENST00000597618 CABYRO75952 493 aa12.18□□□□□ -0.46
TRIM28-210ENST00000597618 NKX3-2P78367 333 aa12.18□□□□□ -0.46
TRIM28-210ENST00000597618 TFF2Q03403 129 aa12.18□□□□□ -0.46
TRIM28-210ENST00000597618 SKIV2LQ15477 1246 aaKnown RBP12.18□□□□□ -0.46
TRIM28-210ENST00000597618 HSP90AB4PQ58FF6 505 aa12.18□□□□□ -0.46
TRIM28-210ENST00000597618 ARMCX2Q7L311 632 aa12.18□□□□□ -0.46
TRIM28-210ENST00000597618 OTOP2Q7RTS6 562 aa12.18□□□□□ -0.46
TRIM28-210ENST00000597618 ITPRIPQ8IWB1 547 aa12.18□□□□□ -0.46
TRIM28-210ENST00000597618 FTSJ3Q8IY81 847 aaKnown RBP12.18□□□□□ -0.46
TRIM28-210ENST00000597618 ANKRD35Q8N283 1001 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms