RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 SAFBQ15424 915 aaKnown RBP eCLIP35.26■■■■□ 3.24
CTCF-203ENST00000566078 PHF20Q9BVI0 1012 aa35.26■■■■□ 3.24
CTCF-203ENST00000566078 KIF28PB7ZC32 967 aa35.25■■■■□ 3.23
CTCF-203ENST00000566078 MCM4P33991 863 aa35.25■■■■□ 3.23
CTCF-203ENST00000566078 GNL2Q13823 731 aaKnown RBP35.25■■■■□ 3.23
CTCF-203ENST00000566078 FAM173BQ6P4H8 233 aa35.25■■■■□ 3.23
CTCF-203ENST00000566078 MOB2Q70IA6 237 aa35.25■■■■□ 3.23
CTCF-203ENST00000566078 ZBTB4Q9P1Z0 1013 aaPredicted RBP35.25■■■■□ 3.23
CTCF-203ENST00000566078 USP14P54578 494 aa35.24■■■■□ 3.23
CTCF-203ENST00000566078 SH3GLB2Q9NR46 395 aa35.24■■■■□ 3.23
CTCF-203ENST00000566078 STAT2P52630 851 aa35.24■■■■□ 3.23
CTCF-203ENST00000566078 DNM1Q05193 864 aaKnown RBP35.24■■■■□ 3.23
CTCF-203ENST00000566078 MAP3K11Q16584 847 aa35.24■■■■□ 3.23
CTCF-203ENST00000566078 SYDE2Q5VT97 1194 aa35.24■■■■□ 3.23
CTCF-203ENST00000566078 BTNL9Q6UXG8 535 aa35.24■■■■□ 3.23
CTCF-203ENST00000566078 LPAR1Q92633 364 aa35.24■■■■□ 3.23
CTCF-203ENST00000566078 BARHL2Q9NY43 387 aa35.24■■■■□ 3.23
CTCF-203ENST00000566078 TRIM75PA6NK02 468 aa35.23■■■■□ 3.23
CTCF-203ENST00000566078 STXBP3O00186 592 aa35.23■■■■□ 3.23
CTCF-203ENST00000566078 BACE1P56817 501 aa35.23■■■■□ 3.23
CTCF-203ENST00000566078 DGKZQ13574 1117 aa35.23■■■■□ 3.23
CTCF-203ENST00000566078 ARMC9Q7Z3E5 817 aa35.23■■■■□ 3.23
CTCF-203ENST00000566078 DIS3L2Q8IYB7 885 aaKnown RBP35.23■■■■□ 3.23
CTCF-203ENST00000566078 ANKRD13AQ8IZ07 590 aa35.23■■■■□ 3.23
CTCF-203ENST00000566078 MTMR8Q96EF0 704 aa35.23■■■■□ 3.23
CTCF-203ENST00000566078 WDR46O15213 610 aaKnown RBP35.22■■■■□ 3.23
CTCF-203ENST00000566078 ZNF408Q9H9D4 720 aa35.22■■■■□ 3.23
CTCF-203ENST00000566078 LOC285556D6RIA3 1793 aa35.22■■■■□ 3.23
CTCF-203ENST00000566078 PNMA6FA0A0J9YX94 578 aa35.21■■■■□ 3.23
CTCF-203ENST00000566078 FMR1Q06787 632 aaKnown RBP eCLIP35.21■■■■□ 3.237e-7■■□□□ 12.4
CTCF-203ENST00000566078 BRAPQ7Z569 592 aa35.21■■■■□ 3.23
CTCF-203ENST00000566078 CCDC148Q8NFR7 591 aa35.21■■■■□ 3.23
CTCF-203ENST00000566078 ZBTB5O15062 677 aa35.21■■■■□ 3.23
CTCF-203ENST00000566078 NCLP19338 710 aaKnown RBP35.21■■■■□ 3.23
CTCF-203ENST00000566078 NLRP5P59047 1200 aa35.21■■■■□ 3.23
CTCF-203ENST00000566078 TYW1BQ6NUM6 668 aa35.21■■■■□ 3.23
CTCF-203ENST00000566078 ELP3Q9H9T3 547 aa35.21■■■■□ 3.23
CTCF-203ENST00000566078 EMILIN3Q9NT22 766 aa35.21■■■■□ 3.23
CTCF-203ENST00000566078 CNPY2Q9Y2B0 182 aa35.21■■■■□ 3.23
CTCF-203ENST00000566078 BTBD18B2RXH4 712 aa35.2■■■■□ 3.23
CTCF-203ENST00000566078 GOLGA6L22H0YM25 854 aa35.2■■■■□ 3.23
CTCF-203ENST00000566078 hCG_1984214I3L0E3 225 aa35.2■■■■□ 3.23
CTCF-203ENST00000566078 KRT2P35908 639 aa35.2■■■■□ 3.23
CTCF-203ENST00000566078 CDC37Q16543 378 aaPredicted RBP35.2■■■■□ 3.23
CTCF-203ENST00000566078 ZNF713Q8N859 430 aaPredicted RBP35.2■■■■□ 3.23
CTCF-203ENST00000566078 BRMS1Q9HCU9 246 aa35.2■■■■□ 3.23
CTCF-203ENST00000566078 AFG3L2Q9Y4W6 797 aa35.2■■■■□ 3.23
CTCF-203ENST00000566078 U2AF2P26368 475 aaKnown RBP eCLIP35.19■■■■□ 3.22
CTCF-203ENST00000566078 NAPAP54920 295 aa35.19■■■■□ 3.22
CTCF-203ENST00000566078 CLMNQ96JQ2 1002 aa35.19■■■■□ 3.22
CTCF-203ENST00000566078 FOXP1Q9H334 677 aaPredicted RBP35.19■■■■□ 3.22
CTCF-203ENST00000566078 FEM1BQ9UK73 627 aa35.19■■■■□ 3.22
CTCF-203ENST00000566078 PRR12Q9ULL5 1215 aa35.19■■■■□ 3.22
CTCF-203ENST00000566078 DDX11L8A8MPP1 907 aa35.18■■■■□ 3.22
CTCF-203ENST00000566078 VCAM1P19320 739 aa35.18■■■■□ 3.22
CTCF-203ENST00000566078 QRICH1Q2TAL8 776 aa35.18■■■■□ 3.22
CTCF-203ENST00000566078 FAM160B2Q86V87 743 aa35.18■■■■□ 3.22
CTCF-203ENST00000566078 OXER1Q8TDS5 423 aa35.18■■■■□ 3.22
CTCF-203ENST00000566078 CCDC12Q8WUD4 166 aaPredicted RBP35.18■■■■□ 3.22
CTCF-203ENST00000566078 CHURC1Q8WUH1 139 aa35.18■■■■□ 3.22
CTCF-203ENST00000566078 RLFQ13129 1914 aa35.18■■■■□ 3.22
CTCF-203ENST00000566078 PLA2G6O60733 806 aa35.17■■■■□ 3.22
CTCF-203ENST00000566078 HMGCS2P54868 508 aa35.17■■■■□ 3.22
CTCF-203ENST00000566078 NPY5RQ15761 445 aa35.17■■■■□ 3.22
CTCF-203ENST00000566078 FAM177A1Q8N128 213 aaPredicted RBP35.17■■■■□ 3.22
CTCF-203ENST00000566078 C19orf81C9J6K1 198 aa35.17■■■■□ 3.22
CTCF-203ENST00000566078 PPP1R11O60927 126 aaPredicted RBP35.17■■■■□ 3.22
CTCF-203ENST00000566078 CALML3P27482 149 aa35.17■■■■□ 3.22
CTCF-203ENST00000566078 KRT85P78386 507 aa35.17■■■■□ 3.22
CTCF-203ENST00000566078 CNKSR2Q8WXI2 1034 aa35.17■■■■□ 3.22
CTCF-203ENST00000566078 COL11A1P12107 1806 aaPredicted RBP35.16■■■■□ 3.22
CTCF-203ENST00000566078 SMCHD1A6NHR9 2005 aa35.16■■■■□ 3.22
CTCF-203ENST00000566078 NR5A1Q13285 461 aa35.16■■■■□ 3.22
CTCF-203ENST00000566078 NOSTRINQ8IVI9 506 aa35.16■■■■□ 3.22
CTCF-203ENST00000566078 KIFC2Q96AC6 838 aa35.16■■■■□ 3.22
CTCF-203ENST00000566078 COA7Q96BR5 231 aa35.16■■■■□ 3.22
CTCF-203ENST00000566078 SNAP25P60880 206 aa35.15■■■■□ 3.22
CTCF-203ENST00000566078 C12orf42Q96LP6 360 aa35.15■■■■□ 3.22
CTCF-203ENST00000566078 TANGO6Q9C0B7 1094 aa35.15■■■■□ 3.22
CTCF-203ENST00000566078 GDPD2Q9HCC8 539 aa35.15■■■■□ 3.22
CTCF-203ENST00000566078 FBXO28Q9NVF7 368 aa35.15■■■■□ 3.22
CTCF-203ENST00000566078 FIBPO43427 364 aa35.14■■■■□ 3.22
CTCF-203ENST00000566078 MYSM1Q5VVJ2 828 aa35.14■■■■□ 3.22
CTCF-203ENST00000566078 PCDHA4Q9UN74 947 aa35.14■■■■□ 3.22
CTCF-203ENST00000566078 PPATQ06203 517 aa35.14■■■■□ 3.22
CTCF-203ENST00000566078 NBR1Q14596 966 aa35.14■■■■□ 3.22
CTCF-203ENST00000566078 PPP1R18Q6NYC8 613 aa35.14■■■■□ 3.22
CTCF-203ENST00000566078 SAMD1Q6SPF0 538 aaPredicted RBP35.14■■■■□ 3.22
CTCF-203ENST00000566078 ERO1BQ86YB8 467 aa35.14■■■■□ 3.22
CTCF-203ENST00000566078 OTUD5Q96G74 571 aa35.14■■■■□ 3.22
CTCF-203ENST00000566078 ZNF396Q96N95 335 aaPredicted RBP35.14■■■■□ 3.22
CTCF-203ENST00000566078 RPAP3Q9H6T3 665 aaPredicted RBP35.14■■■■□ 3.22
CTCF-203ENST00000566078 TMOD4Q9NZQ9 345 aa35.14■■■■□ 3.22
CTCF-203ENST00000566078 SPDYE5A6NIY4 337 aa35.13■■■■□ 3.21
CTCF-203ENST00000566078 CHADLQ6NUI6 762 aa35.13■■■■□ 3.21
CTCF-203ENST00000566078 BLIDQ8IZY5 108 aa35.13■■■■□ 3.21
CTCF-203ENST00000566078 RBM46Q8TBY0 533 aaKnown RBP35.13■■■■□ 3.21
CTCF-203ENST00000566078 TFIP11Q9UBB9 837 aaKnown RBP35.13■■■■□ 3.21
CTCF-203ENST00000566078 LDLRAD1Q5T700 205 aa35.12■■■■□ 3.21
CTCF-203ENST00000566078 GALNT17Q6IS24 598 aa35.12■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms