RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 MYO5AQ9Y4I1 1855 aaKnown RBP13.86□□□□□ -0.19
LDLR-212ENST00000560467 SLC27A2O14975 620 aa13.85□□□□□ -0.19
LDLR-212ENST00000560467 COG2Q14746 738 aa13.85□□□□□ -0.19
LDLR-212ENST00000560467 TRIM60Q495X7 471 aa13.85□□□□□ -0.19
LDLR-212ENST00000560467 C9orf50Q5SZB4 431 aa13.85□□□□□ -0.19
LDLR-212ENST00000560467 RALYLQ86SE5 291 aaKnown RBP13.85□□□□□ -0.19
LDLR-212ENST00000560467 SPICE1Q8N0Z3 855 aa13.85□□□□□ -0.19
LDLR-212ENST00000560467 SDR42E1Q8WUS8 393 aa13.85□□□□□ -0.19
LDLR-212ENST00000560467 DYNLL2Q96FJ2 89 aa13.85□□□□□ -0.19
LDLR-212ENST00000560467 IL25Q9H293 177 aa13.85□□□□□ -0.19
LDLR-212ENST00000560467 CYP46A1Q9Y6A2 500 aa13.85□□□□□ -0.19
LDLR-212ENST00000560467 LAMA2P24043 3122 aaKnown RBP13.85□□□□□ -0.19
LDLR-212ENST00000560467 DNAH12Q6ZR08 3092 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 MINDY4BA8MYZ0 360 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 KBTBD13C9JR72 458 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 MCM2P49736 904 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 PLS1Q14651 629 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 SHHQ15465 462 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 TSGA10IPQ3SY00 556 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 ZNF697Q5TEC3 545 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 VPS53Q5VIR6 699 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 SAMD1Q6SPF0 538 aaPredicted RBP13.84□□□□□ -0.19
LDLR-212ENST00000560467 SLC39A5Q6ZMH5 540 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 HSCBQ8IWL3 235 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 ARRDC4Q8NCT1 418 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 SHCBP1Q8NEM2 672 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 FERMT2Q96AC1 680 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 ATG4CQ96DT6 458 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 JAKMIP1Q96N16 626 aaKnown RBP13.84□□□□□ -0.19
LDLR-212ENST00000560467 TM6SF1Q9BZW5 370 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 CNNM2Q9H8M5 875 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 DCP1AQ9NPI6 582 aaPredicted RBP13.84□□□□□ -0.19
LDLR-212ENST00000560467 HOXC10Q9NYD6 342 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 ARPP21Q9UBL0 812 aaPredicted RBP13.84□□□□□ -0.19
LDLR-212ENST00000560467 ZMYM6O95789 1325 aa13.84□□□□□ -0.19
LDLR-212ENST00000560467 GSG1L2A8MUP6 293 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 SMIM22K7EJ46 135 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 SEPT4O43236 478 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 STRNO43815 780 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 FLOT1O75955 427 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 PCP11498 1178 aaKnown RBP13.83□□□□□ -0.2
LDLR-212ENST00000560467 AKR1B1P15121 316 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 DSG3P32926 999 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 ADCYAP1R1P41586 468 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 NT5C2P49902 561 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 NEK4P51957 841 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 SNX17Q15036 470 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 ANKRD1Q15327 319 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 LRRC41Q15345 812 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 FAM47AQ5JRC9 791 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 BLOC1S2Q6QNY1 142 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 MFSD6Q6ZSS7 791 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 TMEM179Q6ZVK1 233 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 SH3RF1Q7Z6J0 888 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 NCAPG2Q86XI2 1143 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 SIAH1Q8IUQ4 282 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 BADQ92934 168 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 NEK1Q96PY6 1258 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 PDLIM7Q9NR12 457 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 SNX14Q9Y5W7 946 aa13.83□□□□□ -0.2
LDLR-212ENST00000560467 MYH1P12882 1939 aa13.82□□□□□ -0.2
LDLR-212ENST00000560467 TRIM43BA6NCK2 446 aa13.82□□□□□ -0.2
LDLR-212ENST00000560467 PRKAB2O43741 272 aa13.82□□□□□ -0.2
LDLR-212ENST00000560467 CASTP20810 708 aaKnown RBP13.82□□□□□ -0.2
LDLR-212ENST00000560467 ICA1Q05084 483 aa13.82□□□□□ -0.2
LDLR-212ENST00000560467 PDE4BQ07343 736 aa13.82□□□□□ -0.2
LDLR-212ENST00000560467 MB21D1Q8N884 522 aa13.82□□□□□ -0.2
LDLR-212ENST00000560467 NCOA7Q8NI08 942 aa13.82□□□□□ -0.2
LDLR-212ENST00000560467 KCNB2Q92953 911 aa13.82□□□□□ -0.2
LDLR-212ENST00000560467 TRIM43Q96BQ3 446 aaPredicted RBP13.82□□□□□ -0.2
LDLR-212ENST00000560467 CDX2Q99626 313 aaPredicted RBP13.82□□□□□ -0.2
LDLR-212ENST00000560467 KRT23Q9C075 422 aa13.82□□□□□ -0.2
LDLR-212ENST00000560467 MROH8Q9H579 483 aa13.82□□□□□ -0.2
LDLR-212ENST00000560467 TOMM22Q9NS69 142 aa13.82□□□□□ -0.2
LDLR-212ENST00000560467 FRMPD3Q5JV73 1810 aa13.82□□□□□ -0.2
LDLR-212ENST00000560467 VCANP13611 3396 aa13.81□□□□□ -0.2
LDLR-212ENST00000560467 TTC28Q96AY4 2481 aa13.81□□□□□ -0.2
LDLR-212ENST00000560467 CYP2D7A0A087X1C5 515 aa13.81□□□□□ -0.2
LDLR-212ENST00000560467 HSP90AA1P07900 732 aaKnown RBP13.81□□□□□ -0.2
LDLR-212ENST00000560467 CYP21A2P08686 494 aa13.81□□□□□ -0.2
LDLR-212ENST00000560467 HAND2P61296 217 aa13.81□□□□□ -0.2
LDLR-212ENST00000560467 SART3Q15020 963 aaKnown RBP13.81□□□□□ -0.2
LDLR-212ENST00000560467 CHMP4CQ96CF2 233 aa13.81□□□□□ -0.2
LDLR-212ENST00000560467 MAML3Q96JK9 1138 aa13.81□□□□□ -0.2
LDLR-212ENST00000560467 VCPKMTQ9H867 229 aa13.81□□□□□ -0.2
LDLR-212ENST00000560467 ZNF236Q9UL36 1845 aa13.8□□□□□ -0.2
LDLR-212ENST00000560467 USP17L12C9JPN9 530 aa13.8□□□□□ -0.2
LDLR-212ENST00000560467 USP17L21D6R901 530 aa13.8□□□□□ -0.2
LDLR-212ENST00000560467 PGK2P07205 417 aa13.8□□□□□ -0.2
LDLR-212ENST00000560467 ITGB8P26012 769 aa13.8□□□□□ -0.2
LDLR-212ENST00000560467 MCM5P33992 734 aa13.8□□□□□ -0.2
LDLR-212ENST00000560467 TLE2Q04725 743 aa13.8□□□□□ -0.2
LDLR-212ENST00000560467 PPARAQ07869 468 aa13.8□□□□□ -0.2
LDLR-212ENST00000560467 TMEM132BQ14DG7 1078 aa13.8□□□□□ -0.2
LDLR-212ENST00000560467 SBK1Q52WX2 424 aa13.8□□□□□ -0.2
LDLR-212ENST00000560467 AKNAD1Q5T1N1 836 aa13.8□□□□□ -0.2
LDLR-212ENST00000560467 RUFY3Q7L099 469 aa13.8□□□□□ -0.2
LDLR-212ENST00000560467 RASEFQ8IZ41 740 aa13.8□□□□□ -0.2
LDLR-212ENST00000560467 ABRAQ8N0Z2 381 aa13.8□□□□□ -0.2
LDLR-212ENST00000560467 MAFAQ8NHW3 353 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 158.5 ms