RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 CCDC175P0C221 793 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 SCG2P13521 617 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 CYP2C19P33261 490 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 NPY5RQ15761 445 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 CRY2Q49AN0 593 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 KRT27Q7Z3Y8 459 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 IGSF22Q8N9C0 903 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 TBC1D16Q8TBP0 767 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 CCDC34Q96HJ3 373 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 RTFDC1Q9BY42 306 aaPredicted RBP14.17□□□□□ -0.14
RNF4-222ENST00000541204 PARD6BQ9BYG5 372 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 ZSWIM4Q9H7M6 989 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 MCM7P33993 719 aa14.16□□□□□ -0.14
RNF4-222ENST00000541204 RAD9BQ6WBX8 426 aa14.16□□□□□ -0.14
RNF4-222ENST00000541204 TEX11Q8IYF3 940 aa14.16□□□□□ -0.14
RNF4-222ENST00000541204 CERKQ8TCT0 537 aa14.16□□□□□ -0.14
RNF4-222ENST00000541204 STAMQ92783 540 aa14.16□□□□□ -0.14
RNF4-222ENST00000541204 SYNRGQ9UMZ2 1314 aa14.16□□□□□ -0.14
RNF4-222ENST00000541204 FAM193AP78312 1265 aa14.16□□□□□ -0.14
RNF4-222ENST00000541204 GTF2IP78347 998 aa14.16□□□□□ -0.14
RNF4-222ENST00000541204 SPATA1Q5VX52 437 aa14.16□□□□□ -0.14
RNF4-222ENST00000541204 PPFIBP1Q86W92 1011 aa14.16□□□□□ -0.14
RNF4-222ENST00000541204 PROM2Q8N271 834 aa14.16□□□□□ -0.14
RNF4-222ENST00000541204 SYMPKQ92797 1274 aaKnown RBP14.16□□□□□ -0.14
RNF4-222ENST00000541204 PAGE5Q96GU1 130 aa14.16□□□□□ -0.14
RNF4-222ENST00000541204 PANX2Q96RD6 677 aa14.16□□□□□ -0.14
RNF4-222ENST00000541204 ZCCHC17Q9NP64 241 aaKnown RBP14.16□□□□□ -0.14
RNF4-222ENST00000541204 POLRMTO00411 1230 aaKnown RBP14.15□□□□□ -0.14
RNF4-222ENST00000541204 COBLO75128 1261 aa14.15□□□□□ -0.14
RNF4-222ENST00000541204 ATP2B4P23634 1241 aa14.15□□□□□ -0.14
RNF4-222ENST00000541204 PICALMQ13492 652 aa14.15□□□□□ -0.14
RNF4-222ENST00000541204 TXNRD1Q16881 649 aa14.15□□□□□ -0.14
RNF4-222ENST00000541204 TTC38Q5R3I4 469 aa14.15□□□□□ -0.14
RNF4-222ENST00000541204 MXD3Q9BW11 206 aa14.15□□□□□ -0.14
RNF4-222ENST00000541204 ADGRG1Q9Y653 693 aa14.15□□□□□ -0.14
RNF4-222ENST00000541204 LY75O60449 1722 aa14.15□□□□□ -0.14
RNF4-222ENST00000541204 LDHCP07864 332 aa14.15□□□□□ -0.14
RNF4-222ENST00000541204 KIF5BP33176 963 aa14.15□□□□□ -0.14
RNF4-222ENST00000541204 PTGDRQ13258 359 aa14.15□□□□□ -0.14
RNF4-222ENST00000541204 CUL4BQ13620 913 aa14.15□□□□□ -0.14
RNF4-222ENST00000541204 GOLGA1Q92805 767 aa14.15□□□□□ -0.14
RNF4-222ENST00000541204 MYH6P13533 1939 aa14.14□□□□□ -0.15
RNF4-222ENST00000541204 ATP8B1O43520 1251 aa14.14□□□□□ -0.15
RNF4-222ENST00000541204 PFKFB3Q16875 520 aaPredicted RBP14.14□□□□□ -0.15
RNF4-222ENST00000541204 CREBRFQ8IUR6 639 aa14.14□□□□□ -0.15
RNF4-222ENST00000541204 RABGGTAQ92696 567 aa14.14□□□□□ -0.15
RNF4-222ENST00000541204 ARFGAP3Q9NP61 516 aa14.14□□□□□ -0.15
RNF4-222ENST00000541204 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.14□□□□□ -0.15
RNF4-222ENST00000541204 ADD3Q9UEY8 706 aaKnown RBP14.14□□□□□ -0.15
RNF4-222ENST00000541204 OAS2P29728 719 aaKnown RBP14.14□□□□□ -0.15
RNF4-222ENST00000541204 CDC25AP30304 524 aa14.14□□□□□ -0.15
RNF4-222ENST00000541204 HEATR3Q7Z4Q2 680 aa14.14□□□□□ -0.15
RNF4-222ENST00000541204 SH3RF1Q7Z6J0 888 aa14.14□□□□□ -0.15
RNF4-222ENST00000541204 UBXN6Q9BZV1 441 aa14.14□□□□□ -0.15
RNF4-222ENST00000541204 BBOX1O75936 387 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 RASA1P20936 1047 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 CASP14P31944 242 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 PBX1P40424 430 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 DPYDQ12882 1025 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 SMC1AQ14683 1233 aaKnown RBP14.13□□□□□ -0.15
RNF4-222ENST00000541204 DOK7Q18PE1 504 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 CDKAL1Q5VV42 579 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 TYW1BQ6NUM6 668 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 TNFRSF25Q93038 417 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 TMEM47Q9BQJ4 181 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 PUF60Q9UHX1 559 aaKnown RBP14.13□□□□□ -0.15
RNF4-222ENST00000541204 SBF2Q86WG5 1849 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 PPP1R3GB7ZBB8 358 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 TXLNAP40222 546 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 CDK8P49336 464 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 SLC27A3Q5K4L6 730 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 MSL1Q68DK7 614 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 DGKHQ86XP1 1220 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 EYA3Q99504 573 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 VAT1LQ9HCJ6 419 aa14.13□□□□□ -0.15
RNF4-222ENST00000541204 PPEF1O14829 653 aaPredicted RBP14.12□□□□□ -0.15
RNF4-222ENST00000541204 MFAP3LO75121 409 aa14.12□□□□□ -0.15
RNF4-222ENST00000541204 IL1R1P14778 569 aa14.12□□□□□ -0.15
RNF4-222ENST00000541204 CCT6AP40227 531 aaKnown RBP14.12□□□□□ -0.15
RNF4-222ENST00000541204 PPP4CP60510 307 aa14.12□□□□□ -0.15
RNF4-222ENST00000541204 SLC35G1Q2M3R5 365 aa14.12□□□□□ -0.15
RNF4-222ENST00000541204 FUT8Q9BYC5 575 aa14.12□□□□□ -0.15
RNF4-222ENST00000541204 MAD2L2Q9UI95 211 aa14.12□□□□□ -0.15
RNF4-222ENST00000541204 FLT1P17948 1338 aa14.12□□□□□ -0.15
RNF4-222ENST00000541204 FAM205AQ6ZU69 1335 aa14.12□□□□□ -0.15
RNF4-222ENST00000541204 KIF5CO60282 957 aa14.12□□□□□ -0.15
RNF4-222ENST00000541204 FXR1P51114 621 aaKnown RBP eCLIP14.12□□□□□ -0.15
RNF4-222ENST00000541204 EIF6P56537 245 aaKnown RBP14.12□□□□□ -0.15
RNF4-222ENST00000541204 CHMP4BP1P59074 171 aa14.12□□□□□ -0.15
RNF4-222ENST00000541204 GSDMAQ96QA5 445 aa14.12□□□□□ -0.15
RNF4-222ENST00000541204 NAA15Q9BXJ9 866 aaKnown RBP14.12□□□□□ -0.15
RNF4-222ENST00000541204 BLZF1Q9H2G9 400 aa14.12□□□□□ -0.15
RNF4-222ENST00000541204 CTNND2Q9UQB3 1225 aa14.12□□□□□ -0.15
RNF4-222ENST00000541204 GPR75-ASB3A0A0A6YYF3 556 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 CYTH3O43739 400 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 GYPCP04921 128 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 SCNN1DP51172 638 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 ZNF569Q5MCW4 686 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 USP17L2Q6R6M4 530 aa14.11□□□□□ -0.15
RNF4-222ENST00000541204 NEK11Q8NG66 645 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 125.8 ms