RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 SLC39A5Q6ZMH5 540 aa15.46■□□□□ 0.07
CPSF1-204ENST00000529288 XPNPEP3Q9NQH7 507 aa15.46■□□□□ 0.07
CPSF1-204ENST00000529288 MTMR7Q9Y216 660 aa15.46■□□□□ 0.07
CPSF1-204ENST00000529288 CNPY2Q9Y2B0 182 aa15.46■□□□□ 0.07
CPSF1-204ENST00000529288 RIPK3Q9Y572 518 aa15.46■□□□□ 0.07
CPSF1-204ENST00000529288 ALPK3Q96L96 1907 aa15.45■□□□□ 0.06
CPSF1-204ENST00000529288 PGK1P00558 417 aa15.45■□□□□ 0.06
CPSF1-204ENST00000529288 BMP3P12645 472 aa15.45■□□□□ 0.06
CPSF1-204ENST00000529288 NEDD1Q8NHV4 660 aa15.45■□□□□ 0.06
CPSF1-204ENST00000529288 INCENPQ9NQS7 918 aa15.45■□□□□ 0.06
CPSF1-204ENST00000529288 FEM1BQ9UK73 627 aa15.45■□□□□ 0.06
CPSF1-204ENST00000529288 RANBP2P49792 3224 aaKnown RBP15.45■□□□□ 0.06
CPSF1-204ENST00000529288 TSPY2A6NKD2 308 aa15.44■□□□□ 0.06
CPSF1-204ENST00000529288 TMEM232C9JQI7 657 aa15.44■□□□□ 0.06
CPSF1-204ENST00000529288 TRIM60Q495X7 471 aa15.44■□□□□ 0.06
CPSF1-204ENST00000529288 Q7L0L9 218 aa15.44■□□□□ 0.06
CPSF1-204ENST00000529288 ANKRD35Q8N283 1001 aa15.44■□□□□ 0.06
CPSF1-204ENST00000529288 MKL1Q969V6 931 aa15.44■□□□□ 0.06
CPSF1-204ENST00000529288 LENG1Q96BZ8 264 aaPredicted RBP15.44■□□□□ 0.06
CPSF1-204ENST00000529288 HOMER2Q9NSB8 354 aa15.44■□□□□ 0.06
CPSF1-204ENST00000529288 ZHX1Q9UKY1 873 aaPredicted RBP15.44■□□□□ 0.06
CPSF1-204ENST00000529288 STX8Q9UNK0 236 aa15.44■□□□□ 0.06
CPSF1-204ENST00000529288 DIS3Q9Y2L1 958 aaKnown RBP15.44■□□□□ 0.06
CPSF1-204ENST00000529288 MYH8P13535 1937 aa15.44■□□□□ 0.06
CPSF1-204ENST00000529288 A0A0G2JMZ2 1700 aa15.43■□□□□ 0.06
CPSF1-204ENST00000529288 MYH7P12883 1935 aa15.43■□□□□ 0.06
CPSF1-204ENST00000529288 RANBP6O60518 1105 aaKnown RBP15.43■□□□□ 0.06
CPSF1-204ENST00000529288 AKR1A1P14550 325 aa15.43■□□□□ 0.06
CPSF1-204ENST00000529288 MCCP23508 829 aa15.43■□□□□ 0.06
CPSF1-204ENST00000529288 RNF180Q86T96 592 aa15.43■□□□□ 0.06
CPSF1-204ENST00000529288 DEFB123Q8N688 67 aa15.43■□□□□ 0.06
CPSF1-204ENST00000529288 GMCL1P1Q8NEA9 526 aa15.43■□□□□ 0.06
CPSF1-204ENST00000529288 EVI5LQ96CN4 794 aa15.43■□□□□ 0.06
CPSF1-204ENST00000529288 TOMM22Q9NS69 142 aa15.43■□□□□ 0.06
CPSF1-204ENST00000529288 NRBP1Q9UHY1 535 aa15.43■□□□□ 0.06
CPSF1-204ENST00000529288 RLFQ13129 1914 aa15.43■□□□□ 0.06
CPSF1-204ENST00000529288 ZNF865P0CJ78 1059 aaPredicted RBP15.42■□□□□ 0.06
CPSF1-204ENST00000529288 SLC1A4P43007 532 aa15.42■□□□□ 0.06
CPSF1-204ENST00000529288 SNAP25P60880 206 aa15.42■□□□□ 0.06
CPSF1-204ENST00000529288 LRIT3Q3SXY7 679 aa15.42■□□□□ 0.06
CPSF1-204ENST00000529288 RRP12Q5JTH9 1297 aaKnown RBP15.42■□□□□ 0.06
CPSF1-204ENST00000529288 VPS53Q5VIR6 699 aa15.42■□□□□ 0.06
CPSF1-204ENST00000529288 SLC38A10Q9HBR0 1119 aa15.42■□□□□ 0.06
CPSF1-204ENST00000529288 FAM184BQ9ULE4 1060 aa15.42■□□□□ 0.06
CPSF1-204ENST00000529288 ZNF236Q9UL36 1845 aa15.41■□□□□ 0.06
CPSF1-204ENST00000529288 SZT2Q5T011 3432 aa15.41■□□□□ 0.06
CPSF1-204ENST00000529288 TRIM6-TRIM34B2RNG4 842 aa15.41■□□□□ 0.06
CPSF1-204ENST00000529288 NMT2O60551 498 aa15.41■□□□□ 0.06
CPSF1-204ENST00000529288 PDE1AP54750 535 aa15.41■□□□□ 0.06
CPSF1-204ENST00000529288 TLE2Q04725 743 aa15.41■□□□□ 0.06
CPSF1-204ENST00000529288 B4GALNT3Q6L9W6 998 aa15.41■□□□□ 0.06
CPSF1-204ENST00000529288 CCDC174Q6PII3 467 aa15.41■□□□□ 0.06
CPSF1-204ENST00000529288 KCTD1Q719H9 257 aa15.41■□□□□ 0.06
CPSF1-204ENST00000529288 CHURC1Q8WUH1 139 aa15.41■□□□□ 0.06
CPSF1-204ENST00000529288 BADQ92934 168 aa15.41■□□□□ 0.06
CPSF1-204ENST00000529288 LNPKQ9C0E8 428 aa15.41■□□□□ 0.06
CPSF1-204ENST00000529288 SNAI1O95863 264 aaPredicted RBP15.4■□□□□ 0.06
CPSF1-204ENST00000529288 STAT2P52630 851 aa15.4■□□□□ 0.06
CPSF1-204ENST00000529288 SH3RF1Q7Z6J0 888 aa15.4■□□□□ 0.06
CPSF1-204ENST00000529288 FAM160B2Q86V87 743 aa15.4■□□□□ 0.06
CPSF1-204ENST00000529288 SLC17A8Q8NDX2 589 aa15.4■□□□□ 0.06
CPSF1-204ENST00000529288 CHST13Q8NET6 341 aa15.4■□□□□ 0.06
CPSF1-204ENST00000529288 STAG1Q8WVM7 1258 aa15.4■□□□□ 0.06
CPSF1-204ENST00000529288 RILPL2Q969X0 211 aa15.4■□□□□ 0.06
CPSF1-204ENST00000529288 FAM227BQ96M60 508 aa15.4■□□□□ 0.06
CPSF1-204ENST00000529288 AGBL1Q96MI9 1066 aa15.4■□□□□ 0.06
CPSF1-204ENST00000529288 HELLSQ9NRZ9 838 aa15.4■□□□□ 0.06
CPSF1-204ENST00000529288 FBXO40Q9UH90 709 aa15.4■□□□□ 0.06
CPSF1-204ENST00000529288 SYNPO2Q9UMS6 1093 aa15.4■□□□□ 0.06
CPSF1-204ENST00000529288 PHF24Q9UPV7 400 aa15.4■□□□□ 0.06
CPSF1-204ENST00000529288 SALL3Q9BXA9 1300 aa15.4■□□□□ 0.06
CPSF1-204ENST00000529288 POTEB2H3BUK9 544 aa15.39■□□□□ 0.05
CPSF1-204ENST00000529288 ATP2A1O14983 1001 aa15.39■□□□□ 0.05
CPSF1-204ENST00000529288 FOXP2O15409 715 aa15.39■□□□□ 0.05
CPSF1-204ENST00000529288 PQBP1O60828 265 aaKnown RBP15.39■□□□□ 0.05
CPSF1-204ENST00000529288 ALAS1P13196 640 aa15.39■□□□□ 0.05
CPSF1-204ENST00000529288 HDAC1Q13547 482 aaPredicted RBP15.39■□□□□ 0.05
CPSF1-204ENST00000529288 ACVR2BQ13705 512 aa15.39■□□□□ 0.05
CPSF1-204ENST00000529288 CCDC96Q2M329 555 aa15.39■□□□□ 0.05
CPSF1-204ENST00000529288 PPP4R3BQ5MIZ7 849 aa15.39■□□□□ 0.05
CPSF1-204ENST00000529288 VTI1AQ96AJ9 217 aa15.39■□□□□ 0.05
CPSF1-204ENST00000529288 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.39■□□□□ 0.05
CPSF1-204ENST00000529288 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.39■□□□□ 0.05
CPSF1-204ENST00000529288 DNAJC25-GNG10A0A024R161 153 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 A0A0D9SFI3 127 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 A0A1W2PQ45 241 aaPredicted RBP15.38■□□□□ 0.05
CPSF1-204ENST00000529288 A0A1W2PQY0 241 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 TRIM43BA6NCK2 446 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 OAZ1P54368 228 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 CNTN2Q02246 1040 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 MCMDC2Q4G0Z9 681 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 RCSD1Q6JBY9 416 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 NOL8Q76FK4 1167 aaKnown RBP15.38■□□□□ 0.05
CPSF1-204ENST00000529288 RASGRP2Q7LDG7 609 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 MSL3Q8N5Y2 521 aaKnown RBP15.38■□□□□ 0.05
CPSF1-204ENST00000529288 TRIM43Q96BQ3 446 aaPredicted RBP15.38■□□□□ 0.05
CPSF1-204ENST00000529288 GMCL1Q96IK5 515 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 FAM161BQ96MY7 647 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 ACAD9Q9H845 621 aa15.38■□□□□ 0.05
CPSF1-204ENST00000529288 STARD7Q9NQZ5 370 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms