RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 EZRP15311 586 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 COPB2P35606 906 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 TECP42680 631 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 IRX4P78413 519 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 PTPN12Q05209 780 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 MCMDC2Q4G0Z9 681 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 ARHGAP15Q53QZ3 475 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 HERC4Q5GLZ8 1057 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 ZBTB41Q5SVQ8 909 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 C6orf163Q5TEZ5 329 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 ZFPM1Q8IX07 1006 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 SIX5Q8N196 739 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 PNISRQ8TF01 805 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 CCDC127Q96BQ5 260 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 DCAF5Q96JK2 942 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 ANO3Q9BYT9 981 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 SCUBE2Q9NQ36 999 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 A2MP01023 1474 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 PNPLA7Q6ZV29 1317 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 A0A0U1RQG5 324 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 ANKRD18BA2A2Z9 1011 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 DYNC1LI2O43237 492 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 POMCP01189 267 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 RASA1P20936 1047 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 MCM2P49736 904 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 RARSP54136 660 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 LACTBP83111 547 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 BFSP1Q12934 665 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 SHHQ15465 462 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 KIAA1211Q6ZU35 1233 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 ZNF365Q70YC5 407 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 C11orf74Q86VG3 221 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 DNAJC10Q8IXB1 793 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 MYOZ2Q9NPC6 264 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 TMEM9BQ9NQ34 198 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 USP40Q9NVE5 1235 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 MOSPD1Q9UJG1 213 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 FBXO3Q9UK99 471 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 MAP3K5Q99683 1374 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 CFTRP13569 1480 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 ZCCHC6Q5VYS8 1495 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 FAM205CA6NFA0 338 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 HOXA2O43364 376 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 URODP06132 367 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 COX6B1P14854 86 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 SIGLEC14Q08ET2 396 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 IFIT5Q13325 482 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 RASA3Q14644 834 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 EDRF1Q3B7T1 1238 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 PPP4R3BQ5MIZ7 849 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 USP33Q8TEY7 942 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 DPF2Q92785 391 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 HOMER2Q9NSB8 354 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 ELOVL2Q9NXB9 296 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 PRKAG3Q9UGI9 489 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 SAMM50Q9Y512 469 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 INSL6Q9Y581 213 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 C10orf71Q711Q0 1435 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 SH3TC1Q8TE82 1336 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 J3QW42 95 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 MLYCDO95822 493 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 PFKMP08237 780 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 ALOX5P09917 674 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 PTGER2P43116 358 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 CCDC173Q0VFZ6 552 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 LMAN2Q12907 356 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 GNL2Q13823 731 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 METTL24Q5JXM2 366 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 NOL9Q5SY16 702 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 SHQ1Q6PI26 577 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 DZIP1LQ8IYY4 767 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 GALNT15Q8N3T1 639 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 TTC30BQ8N4P2 665 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 B3GALNT2Q8NCR0 500 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 CHMP4CQ96CF2 233 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 DISP2A7MBM2 1401 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 HIVEP3Q5T1R4 2406 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 SLC25A17O43808 307 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 GPR37L1O60883 481 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 STBD1O95210 358 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 LRG1P02750 347 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 JMJD7P0C870 316 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 ALPPL2P10696 532 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 STAT1P42224 750 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 NPY2RP49146 381 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 ANTXR2P58335 489 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 BPIFB4P59827 614 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 RPS8P62241 208 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 NFIXQ14938 502 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 VEPH1Q14D04 833 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 ATP2B3Q16720 1220 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 RHBDD1Q8TEB9 315 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 ERCC4Q92889 916 aaPredicted RBP3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 GLMNQ92990 594 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 NXPE2Q96DL1 559 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 GDAP1L1Q96MZ0 367 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 DDX50Q9BQ39 737 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 IGSF5Q9NSI5 407 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 DKK3Q9UBP4 350 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 NARFQ9UHQ1 456 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms