RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ADSSL1Q8N142 457 aa14.31□□□□□ -0.12
SHMT1-205ENST00000395684 RMND1Q9NWS8 449 aa14.31□□□□□ -0.12
SHMT1-205ENST00000395684 TFR2Q9UP52 801 aa14.31□□□□□ -0.12
SHMT1-205ENST00000395684 H7C1D1 291 aa14.3□□□□□ -0.12
SHMT1-205ENST00000395684 CYP2D6P10635 497 aa14.3□□□□□ -0.12
SHMT1-205ENST00000395684 UBE4AQ14139 1066 aa14.3□□□□□ -0.12
SHMT1-205ENST00000395684 NAALADL2Q58DX5 795 aa14.3□□□□□ -0.12
SHMT1-205ENST00000395684 ARL6IP4Q66PJ3 421 aaKnown RBP14.3□□□□□ -0.12
SHMT1-205ENST00000395684 MSL3Q8N5Y2 521 aaKnown RBP14.3□□□□□ -0.12
SHMT1-205ENST00000395684 DCP1AQ9NPI6 582 aaPredicted RBP14.3□□□□□ -0.12
SHMT1-205ENST00000395684 ORC4O43929 436 aa14.3□□□□□ -0.12
SHMT1-205ENST00000395684 LONP1P36776 959 aaKnown RBP14.3□□□□□ -0.12
SHMT1-205ENST00000395684 STAT6P42226 847 aa14.3□□□□□ -0.12
SHMT1-205ENST00000395684 CASP8Q14790 479 aa14.3□□□□□ -0.12
SHMT1-205ENST00000395684 CAVIN4Q5BKX8 364 aa14.3□□□□□ -0.12
SHMT1-205ENST00000395684 WDR59Q6PJI9 974 aa14.3□□□□□ -0.12
SHMT1-205ENST00000395684 AEBP2Q6ZN18 517 aaPredicted RBP14.3□□□□□ -0.12
SHMT1-205ENST00000395684 MB21D1Q8N884 522 aa14.3□□□□□ -0.12
SHMT1-205ENST00000395684 RASGRP4Q8TDF6 673 aa14.3□□□□□ -0.12
SHMT1-205ENST00000395684 NSUN4Q96CB9 384 aaKnown RBP14.3□□□□□ -0.12
SHMT1-205ENST00000395684 HDAC6Q9UBN7 1215 aa14.3□□□□□ -0.12
SHMT1-205ENST00000395684 A0A0G2JS52 829 aa14.29□□□□□ -0.12
SHMT1-205ENST00000395684 PP2D1A8MPX8 630 aa14.29□□□□□ -0.12
SHMT1-205ENST00000395684 ENC1O14682 589 aa14.29□□□□□ -0.12
SHMT1-205ENST00000395684 ITPK1Q13572 414 aa14.29□□□□□ -0.12
SHMT1-205ENST00000395684 RCSD1Q6JBY9 416 aa14.29□□□□□ -0.12
SHMT1-205ENST00000395684 ANKRD18AQ8IVF6 992 aa14.29□□□□□ -0.12
SHMT1-205ENST00000395684 OR8K1Q8NGG5 319 aa14.29□□□□□ -0.12
SHMT1-205ENST00000395684 ZNF507Q8TCN5 953 aa14.29□□□□□ -0.12
SHMT1-205ENST00000395684 DISC1Q9NRI5 854 aa14.29□□□□□ -0.12
SHMT1-205ENST00000395684 KLRK1P26718 216 aa14.29□□□□□ -0.12
SHMT1-205ENST00000395684 MECOMQ03112 1051 aa14.29□□□□□ -0.12
SHMT1-205ENST00000395684 TRAPPC11Q7Z392 1133 aa14.29□□□□□ -0.12
SHMT1-205ENST00000395684 BLIDQ8IZY5 108 aa14.29□□□□□ -0.12
SHMT1-205ENST00000395684 GPKOWQ92917 476 aaPredicted RBP eCLIP14.29□□□□□ -0.12
SHMT1-205ENST00000395684 DNAJC7Q99615 494 aa14.29□□□□□ -0.12
SHMT1-205ENST00000395684 MINPP1Q9UNW1 487 aa14.29□□□□□ -0.12
SHMT1-205ENST00000395684 FAN1Q9Y2M0 1017 aa14.29□□□□□ -0.12
SHMT1-205ENST00000395684 LRRIQ3A6PVS8 624 aaPredicted RBP14.28□□□□□ -0.12
SHMT1-205ENST00000395684 HERVK_113P62684 666 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 TYW1BQ6NUM6 668 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 LUC7L2Q9Y383 392 aaKnown RBP14.28□□□□□ -0.12
SHMT1-205ENST00000395684 A0A0U1RQG5 324 aaPredicted RBP14.28□□□□□ -0.12
SHMT1-205ENST00000395684 LGALS16A8MUM7 142 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 PSMD14O00487 310 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 KLRC4O43908 158 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 EIF3JO75822 258 aaKnown RBP14.28□□□□□ -0.12
SHMT1-205ENST00000395684 ERFEQ4G0M1 354 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 WDR93Q6P2C0 686 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 GOLGA5Q8TBA6 731 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 BSDC1Q9NW68 430 aaPredicted RBP14.28□□□□□ -0.12
SHMT1-205ENST00000395684 DLEC1Q9Y238 1755 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 LOC102724428A0A0B4J2F2 783 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 SIK1P57059 783 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 LRRC15Q8TF66 581 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 ACSBG1Q96GR2 724 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 PLIN2Q99541 437 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 TMEM60Q9H2L4 133 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 HAUS4Q9H6D7 363 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 CAPN11Q9UMQ6 739 aa14.28□□□□□ -0.12
SHMT1-205ENST00000395684 A0A1W2PQC6 194 aa14.27□□□□□ -0.12
SHMT1-205ENST00000395684 TSPY2A6NKD2 308 aa14.27□□□□□ -0.12
SHMT1-205ENST00000395684 PES1O00541 588 aaKnown RBP14.27□□□□□ -0.12
SHMT1-205ENST00000395684 SRGAP2O75044 1071 aa14.27□□□□□ -0.12
SHMT1-205ENST00000395684 ATP1A1P05023 1023 aaKnown RBP14.27□□□□□ -0.12
SHMT1-205ENST00000395684 ACTN2P35609 894 aa14.27□□□□□ -0.12
SHMT1-205ENST00000395684 SLC4A8Q2Y0W8 1093 aa14.27□□□□□ -0.12
SHMT1-205ENST00000395684 STAG2Q8N3U4 1231 aa14.27□□□□□ -0.12
SHMT1-205ENST00000395684 EEF2KMTQ96G04 330 aa14.27□□□□□ -0.12
SHMT1-205ENST00000395684 MMS19Q96T76 1030 aa14.27□□□□□ -0.12
SHMT1-205ENST00000395684 PCDHA4Q9UN74 947 aa14.27□□□□□ -0.12
SHMT1-205ENST00000395684 PHLPP1O60346 1717 aa14.27□□□□□ -0.13
SHMT1-205ENST00000395684 M0R2N6 131 aa14.27□□□□□ -0.13
SHMT1-205ENST00000395684 EEF1GP26641 437 aaKnown RBP14.27□□□□□ -0.13
SHMT1-205ENST00000395684 CALML3P27482 149 aa14.27□□□□□ -0.13
SHMT1-205ENST00000395684 DTHD1Q6ZMT9 781 aa14.27□□□□□ -0.13
SHMT1-205ENST00000395684 FBXO33Q7Z6M2 555 aa14.27□□□□□ -0.13
SHMT1-205ENST00000395684 CELF1Q92879 486 aaKnown RBP14.27□□□□□ -0.13
SHMT1-205ENST00000395684 GBP3Q9H0R5 595 aa14.27□□□□□ -0.13
SHMT1-205ENST00000395684 AGPAT5Q9NUQ2 364 aa14.27□□□□□ -0.13
SHMT1-205ENST00000395684 PDS5AQ29RF7 1337 aaKnown RBP14.26□□□□□ -0.13
SHMT1-205ENST00000395684 RASSF10A6NK89 507 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 PHACTR2O75167 634 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 TUBBP07437 444 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 PRDX5P30044 214 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 KCNB1Q14721 858 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 CCDC122Q5T0U0 273 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 IL17RBQ9NRM6 502 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 RNF216Q9NWF9 866 aaPredicted RBP14.26□□□□□ -0.13
SHMT1-205ENST00000395684 B4DLN1 442 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 KIF5BP33176 963 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 USP14P54578 494 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 TTI2Q6NXR4 508 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 GIMAP8Q8ND71 665 aaPredicted RBP14.26□□□□□ -0.13
SHMT1-205ENST00000395684 CCDC148Q8NFR7 591 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 CCDC102AQ96A19 550 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 TRIM47Q96LD4 638 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 CRNKL1Q9BZJ0 848 aaKnown RBP14.26□□□□□ -0.13
SHMT1-205ENST00000395684 THAP9Q9H5L6 903 aa14.26□□□□□ -0.13
SHMT1-205ENST00000395684 KBTBD4Q9NVX7 518 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms