RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ERICH2A1L162 156 aa16.08■□□□□ 0.16
SDC1-201ENST00000254351 KRT86O43790 486 aa16.08■□□□□ 0.16
SDC1-201ENST00000254351 PARP1P09874 1014 aaKnown RBP16.08■□□□□ 0.16
SDC1-201ENST00000254351 TATP17735 454 aaPredicted RBP16.08■□□□□ 0.16
SDC1-201ENST00000254351 PHKA1P46020 1223 aa16.08■□□□□ 0.16
SDC1-201ENST00000254351 PSEN1P49768 467 aa16.08■□□□□ 0.16
SDC1-201ENST00000254351 SHISA4Q96DD7 197 aa16.08■□□□□ 0.16
SDC1-201ENST00000254351 HAUS4Q9H6D7 363 aa16.08■□□□□ 0.16
SDC1-201ENST00000254351 RGPD2P0DJD1 1756 aa16.07■□□□□ 0.16
SDC1-201ENST00000254351 XDHP47989 1333 aa16.07■□□□□ 0.16
SDC1-201ENST00000254351 RDXP35241 583 aaKnown RBP16.07■□□□□ 0.16
SDC1-201ENST00000254351 NNTQ13423 1086 aa16.07■□□□□ 0.16
SDC1-201ENST00000254351 CCDC70Q6NSX1 233 aa16.07■□□□□ 0.16
SDC1-201ENST00000254351 TYW1BQ6NUM6 668 aa16.07■□□□□ 0.16
SDC1-201ENST00000254351 TRIM47Q96LD4 638 aa16.07■□□□□ 0.16
SDC1-201ENST00000254351 SCLT1Q96NL6 688 aa16.07■□□□□ 0.16
SDC1-201ENST00000254351 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.07■□□□□ 0.16
SDC1-201ENST00000254351 CAPN6Q9Y6Q1 641 aa16.07■□□□□ 0.16
SDC1-201ENST00000254351 PP2D1A8MPX8 630 aa16.07■□□□□ 0.16
SDC1-201ENST00000254351 BUB1O43683 1085 aa16.07■□□□□ 0.16
SDC1-201ENST00000254351 ADD2P35612 726 aa16.07■□□□□ 0.16
SDC1-201ENST00000254351 TRADDQ15628 312 aa16.07■□□□□ 0.16
SDC1-201ENST00000254351 MTRQ99707 1265 aa16.07■□□□□ 0.16
SDC1-201ENST00000254351 BCCIPQ9P287 314 aaKnown RBP eCLIP16.07■□□□□ 0.16
SDC1-201ENST00000254351 FAM184BQ9ULE4 1060 aa16.07■□□□□ 0.16
SDC1-201ENST00000254351 CEP131Q9UPN4 1083 aa16.07■□□□□ 0.16
SDC1-201ENST00000254351 PSMD14O00487 310 aa16.06■□□□□ 0.16
SDC1-201ENST00000254351 TOM1O60784 492 aa16.06■□□□□ 0.16
SDC1-201ENST00000254351 CPP00450 1065 aa16.06■□□□□ 0.16
SDC1-201ENST00000254351 PHKG2P15735 406 aa16.06■□□□□ 0.16
SDC1-201ENST00000254351 PDE6AP16499 860 aa16.06■□□□□ 0.16
SDC1-201ENST00000254351 PIK3AP1Q6ZUJ8 805 aa16.06■□□□□ 0.16
SDC1-201ENST00000254351 CRACR2BQ8N4Y2 399 aaPredicted RBP16.06■□□□□ 0.16
SDC1-201ENST00000254351 CCDC51Q96ER9 411 aa16.06■□□□□ 0.16
SDC1-201ENST00000254351 RNPC3Q96LT9 517 aaKnown RBP16.06■□□□□ 0.16
SDC1-201ENST00000254351 CCDC43Q96MW1 224 aaKnown RBP16.06■□□□□ 0.16
SDC1-201ENST00000254351 CEP89Q96ST8 783 aa16.06■□□□□ 0.16
SDC1-201ENST00000254351 NHEJ1Q9H9Q4 299 aaPredicted RBP16.06■□□□□ 0.16
SDC1-201ENST00000254351 EPB41L4AQ9HCS5 686 aaPredicted RBP16.06■□□□□ 0.16
SDC1-201ENST00000254351 IFNAR1P17181 557 aa16.06■□□□□ 0.16
SDC1-201ENST00000254351 IFIT5Q13325 482 aaKnown RBP16.06■□□□□ 0.16
SDC1-201ENST00000254351 IFNL3Q8IZI9 196 aa16.06■□□□□ 0.16
SDC1-201ENST00000254351 WASF1Q92558 559 aa16.06■□□□□ 0.16
SDC1-201ENST00000254351 TMEM87BQ96K49 555 aa16.06■□□□□ 0.16
SDC1-201ENST00000254351 NFU1Q9UMS0 254 aa16.06■□□□□ 0.16
SDC1-201ENST00000254351 SRCAPQ6ZRS2 3230 aa16.06■□□□□ 0.16
SDC1-201ENST00000254351 ADAMTS3O15072 1205 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 HSF2BPO75031 334 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 FAM153BP0C7A2 387 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 FAM153CQ494X1 144 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 TMC4Q7Z404 712 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 SPATA20Q8TB22 786 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 CABS1Q96KC9 395 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 ZIM3Q96PE6 472 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 FAM153AQ9UHL3 310 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 CEP83Q9Y592 693 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 PLEKHA8P1O95397 391 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 MCM3P25205 808 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 CKAP4Q07065 602 aaKnown RBP16.05■□□□□ 0.16
SDC1-201ENST00000254351 KIF5AQ12840 1032 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 FANCBQ8NB91 859 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 GSDMAQ96QA5 445 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 FOXP1Q9H334 677 aaPredicted RBP16.05■□□□□ 0.16
SDC1-201ENST00000254351 MYO1AQ9UBC5 1043 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 E7EVH7 732 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 TUBBP07437 444 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 RPSAP08865 295 aaKnown RBP16.05■□□□□ 0.16
SDC1-201ENST00000254351 MB21D1Q8N884 522 aa16.05■□□□□ 0.16
SDC1-201ENST00000254351 ZNHIT6Q9NWK9 470 aaKnown RBP16.05■□□□□ 0.16
SDC1-201ENST00000254351 CYP2D7A0A087X1C5 515 aa16.04■□□□□ 0.16
SDC1-201ENST00000254351 DEXIO95424 95 aa16.04■□□□□ 0.16
SDC1-201ENST00000254351 VEGFAP15692 232 aaPredicted RBP16.04■□□□□ 0.16
SDC1-201ENST00000254351 TUBB4BP68371 445 aa16.04■□□□□ 0.16
SDC1-201ENST00000254351 HDLBPQ00341 1268 aaKnown RBP16.04■□□□□ 0.16
SDC1-201ENST00000254351 MAATS1Q7Z4T9 603 aa16.04■□□□□ 0.16
SDC1-201ENST00000254351 SDR42E1Q8WUS8 393 aa16.04■□□□□ 0.16
SDC1-201ENST00000254351 N4BP2L2Q92802 583 aaPredicted RBP16.04■□□□□ 0.16
SDC1-201ENST00000254351 HPS3Q969F9 1004 aa16.04■□□□□ 0.16
SDC1-201ENST00000254351 SLC24A3Q9HC58 644 aa16.04■□□□□ 0.16
SDC1-201ENST00000254351 FAM207AQ9NSI2 230 aaPredicted RBP16.04■□□□□ 0.16
SDC1-201ENST00000254351 TBC1D2BQ9UPU7 963 aa16.04■□□□□ 0.16
SDC1-201ENST00000254351 KDM3BQ7LBC6 1761 aa16.04■□□□□ 0.16
SDC1-201ENST00000254351 SHOX2O60902 331 aaPredicted RBP16.04■□□□□ 0.16
SDC1-201ENST00000254351 ZNF654Q8IZM8 581 aa16.04■□□□□ 0.16
SDC1-201ENST00000254351 MRC1P22897 1456 aa16.04■□□□□ 0.16
SDC1-201ENST00000254351 CYP27B1O15528 508 aa16.03■□□□□ 0.16
SDC1-201ENST00000254351 PDHBP11177 359 aa16.03■□□□□ 0.16
SDC1-201ENST00000254351 USP8P40818 1118 aa16.03■□□□□ 0.16
SDC1-201ENST00000254351 SF3B2Q13435 895 aaKnown RBP16.03■□□□□ 0.16
SDC1-201ENST00000254351 SPATA4Q8NEY3 305 aa16.03■□□□□ 0.16
SDC1-201ENST00000254351 RASGRP4Q8TDF6 673 aa16.03■□□□□ 0.16
SDC1-201ENST00000254351 CCDC42Q96M95 316 aa16.03■□□□□ 0.16
SDC1-201ENST00000254351 PACSIN2Q9UNF0 486 aaPredicted RBP16.03■□□□□ 0.16
SDC1-201ENST00000254351 SKAP2O75563 359 aaPredicted RBP16.03■□□□□ 0.16
SDC1-201ENST00000254351 CARSP49589 748 aaKnown RBP16.03■□□□□ 0.16
SDC1-201ENST00000254351 TBC1D8BQ0IIM8 1120 aa16.03■□□□□ 0.16
SDC1-201ENST00000254351 SWT1Q5T5J6 900 aaKnown RBP16.03■□□□□ 0.16
SDC1-201ENST00000254351 IRF2BP1Q8IU81 584 aa16.03■□□□□ 0.16
SDC1-201ENST00000254351 OR2W6PQ8NHA6 318 aa16.03■□□□□ 0.16
SDC1-201ENST00000254351 STRBPQ96SI9 672 aaKnown RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms