RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 ERVK-9P63128 1117 aa30.29■■■□□ 2.44
TRIM28-204ENST00000594806 ERVK-24P63145 666 aa30.29■■■□□ 2.44
TRIM28-204ENST00000594806 CCNA1P78396 465 aa30.29■■■□□ 2.44
TRIM28-204ENST00000594806 NKX2-3Q8TAU0 364 aa30.29■■■□□ 2.44
TRIM28-204ENST00000594806 FEM1BQ9UK73 627 aa30.29■■■□□ 2.44
TRIM28-204ENST00000594806 ADAMTS5Q9UNA0 930 aa30.29■■■□□ 2.44
TRIM28-204ENST00000594806 EIF5BO60841 1220 aaKnown RBP30.28■■■□□ 2.44
TRIM28-204ENST00000594806 FMNL1O95466 1100 aaPredicted RBP30.28■■■□□ 2.44
TRIM28-204ENST00000594806 DCAF4Q8WV16 495 aa30.28■■■□□ 2.44
TRIM28-204ENST00000594806 ZKSCAN3Q9BRR0 538 aa30.28■■■□□ 2.44
TRIM28-204ENST00000594806 TXNRD2Q9NNW7 524 aa30.28■■■□□ 2.44
TRIM28-204ENST00000594806 PPP1R9AQ9ULJ8 1098 aa30.28■■■□□ 2.44
TRIM28-204ENST00000594806 PLA2G6O60733 806 aa30.27■■■□□ 2.44
TRIM28-204ENST00000594806 TSGA10IPQ3SY00 556 aa30.27■■■□□ 2.44
TRIM28-204ENST00000594806 STOX1Q6ZVD7 989 aa30.27■■■□□ 2.44
TRIM28-204ENST00000594806 TNS4Q8IZW8 715 aa30.27■■■□□ 2.44
TRIM28-204ENST00000594806 PRPF38AQ8NAV1 312 aaKnown RBP30.27■■■□□ 2.44
TRIM28-204ENST00000594806 SLF1Q9BQI6 1058 aa30.27■■■□□ 2.44
TRIM28-204ENST00000594806 MTA3Q9BTC8 594 aa30.27■■■□□ 2.44
TRIM28-204ENST00000594806 PAGR1Q9BTK6 254 aa30.27■■■□□ 2.44
TRIM28-204ENST00000594806 TNKSO95271 1327 aa30.26■■■□□ 2.44
TRIM28-204ENST00000594806 ZKSCAN1P17029 563 aaPredicted RBP30.26■■■□□ 2.43
TRIM28-204ENST00000594806 SART3Q15020 963 aaKnown RBP30.26■■■□□ 2.43
TRIM28-204ENST00000594806 FBXO46Q6PJ61 603 aaPredicted RBP30.26■■■□□ 2.43
TRIM28-204ENST00000594806 POTEEQ6S8J3 1075 aa30.26■■■□□ 2.43
TRIM28-204ENST00000594806 CHURC1Q8WUH1 139 aa30.26■■■□□ 2.43
TRIM28-204ENST00000594806 TRIM47Q96LD4 638 aa30.26■■■□□ 2.43
TRIM28-204ENST00000594806 NUP88Q99567 741 aaPredicted RBP30.26■■■□□ 2.43
TRIM28-204ENST00000594806 ARHGAP39Q9C0H5 1083 aa30.26■■■□□ 2.43
TRIM28-204ENST00000594806 MCOLN1Q9GZU1 580 aa30.26■■■□□ 2.43
TRIM28-204ENST00000594806 A0A0G2JMZ2 1700 aa30.25■■■□□ 2.43
TRIM28-204ENST00000594806 CNMDO75829 334 aa30.25■■■□□ 2.43
TRIM28-204ENST00000594806 FDX1P10109 184 aa30.25■■■□□ 2.43
TRIM28-204ENST00000594806 MCCP23508 829 aa30.25■■■□□ 2.43
TRIM28-204ENST00000594806 CYB5R4Q7L1T6 521 aa30.25■■■□□ 2.43
TRIM28-204ENST00000594806 FAM160B2Q86V87 743 aa30.25■■■□□ 2.43
TRIM28-204ENST00000594806 ENAHQ8N8S7 591 aaPredicted RBP30.25■■■□□ 2.43
TRIM28-204ENST00000594806 KAT14Q9H8E8 782 aa30.25■■■□□ 2.43
TRIM28-204ENST00000594806 TAF6LQ9Y6J9 622 aa30.25■■■□□ 2.43
TRIM28-204ENST00000594806 ERICH2A1L162 156 aa30.24■■■□□ 2.43
TRIM28-204ENST00000594806 TNPO2O14787 897 aaKnown RBP30.24■■■□□ 2.43
TRIM28-204ENST00000594806 MAPK4P31152 587 aa30.24■■■□□ 2.43
TRIM28-204ENST00000594806 CAP1Q01518 475 aa30.24■■■□□ 2.43
TRIM28-204ENST00000594806 KRT32Q14532 448 aa30.24■■■□□ 2.43
TRIM28-204ENST00000594806 CCAR1Q8IX12 1150 aaKnown RBP30.24■■■□□ 2.43
TRIM28-204ENST00000594806 MB21D2Q8IYB1 491 aaPredicted RBP30.24■■■□□ 2.43
TRIM28-204ENST00000594806 COA7Q96BR5 231 aa30.24■■■□□ 2.43
TRIM28-204ENST00000594806 ATG4CQ96DT6 458 aa30.24■■■□□ 2.43
TRIM28-204ENST00000594806 FBXO28Q9NVF7 368 aa30.24■■■□□ 2.43
TRIM28-204ENST00000594806 PTPN22Q9Y2R2 807 aa30.24■■■□□ 2.43
TRIM28-204ENST00000594806 CTGFP29279 349 aa30.23■■■□□ 2.43
TRIM28-204ENST00000594806 STAT2P52630 851 aa30.23■■■□□ 2.43
TRIM28-204ENST00000594806 Q3C1V9 767 aa30.23■■■□□ 2.43
TRIM28-204ENST00000594806 IFIT1BQ5T764 474 aaKnown RBP30.23■■■□□ 2.43
TRIM28-204ENST00000594806 BTBD7Q9P203 1132 aa30.23■■■□□ 2.43
TRIM28-204ENST00000594806 SRRDQ9UH36 339 aa30.23■■■□□ 2.43
TRIM28-204ENST00000594806 DOCK3Q8IZD9 2030 aa30.23■■■□□ 2.43
TRIM28-204ENST00000594806 VWA5AO00534 786 aa30.22■■■□□ 2.43
TRIM28-204ENST00000594806 MCM5P33992 734 aa30.22■■■□□ 2.43
TRIM28-204ENST00000594806 SEC23AQ15436 765 aa30.22■■■□□ 2.43
TRIM28-204ENST00000594806 PNMA1Q8ND90 353 aa30.22■■■□□ 2.43
TRIM28-204ENST00000594806 KCNB2Q92953 911 aa30.22■■■□□ 2.43
TRIM28-204ENST00000594806 TMEM232C9JQI7 657 aa30.21■■■□□ 2.43
TRIM28-204ENST00000594806 IFIT3O14879 490 aaKnown RBP30.21■■■□□ 2.43
TRIM28-204ENST00000594806 SNHG28P0DPA3 235 aa30.21■■■□□ 2.43
TRIM28-204ENST00000594806 HSPA4P34932 840 aa30.21■■■□□ 2.43
TRIM28-204ENST00000594806 SHCBP1Q8NEM2 672 aa30.21■■■□□ 2.43
TRIM28-204ENST00000594806 SPATC1LQ9H0A9 340 aa30.21■■■□□ 2.43
TRIM28-204ENST00000594806 ZSWIM8A7E2V4 1837 aa30.21■■■□□ 2.43
TRIM28-204ENST00000594806 PDHBP11177 359 aa30.2■■■□□ 2.43
TRIM28-204ENST00000594806 ISY1Q9ULR0 285 aaKnown RBP30.2■■■□□ 2.43
TRIM28-204ENST00000594806 COL11A1P12107 1806 aaPredicted RBP30.19■■■□□ 2.42
TRIM28-204ENST00000594806 ZBED4O75132 1171 aa30.19■■■□□ 2.42
TRIM28-204ENST00000594806 COPB2P35606 906 aa30.19■■■□□ 2.42
TRIM28-204ENST00000594806 CCDC96Q2M329 555 aa30.19■■■□□ 2.42
TRIM28-204ENST00000594806 GPATCH4Q5T3I0 446 aaKnown RBP30.19■■■□□ 2.42
TRIM28-204ENST00000594806 SAMD1Q6SPF0 538 aaPredicted RBP30.19■■■□□ 2.42
TRIM28-204ENST00000594806 TMEM87BQ96K49 555 aa30.19■■■□□ 2.42
TRIM28-204ENST00000594806 CTDP1Q9Y5B0 961 aaPredicted RBP30.19■■■□□ 2.42
TRIM28-204ENST00000594806 SLC25A27O95847 323 aa30.18■■■□□ 2.42
TRIM28-204ENST00000594806 IKQ13123 557 aaPredicted RBP30.18■■■□□ 2.42
TRIM28-204ENST00000594806 WTAPQ15007 396 aa30.18■■■□□ 2.42
TRIM28-204ENST00000594806 BTNL9Q6UXG8 535 aa30.18■■■□□ 2.42
TRIM28-204ENST00000594806 KCTD1Q719H9 257 aa30.18■■■□□ 2.42
TRIM28-204ENST00000594806 TMTC2Q8N394 836 aa30.18■■■□□ 2.42
TRIM28-204ENST00000594806 KIFC2Q96AC6 838 aa30.18■■■□□ 2.42
TRIM28-204ENST00000594806 NEK1Q96PY6 1258 aa30.18■■■□□ 2.42
TRIM28-204ENST00000594806 MTMR7Q9Y216 660 aa30.18■■■□□ 2.42
TRIM28-204ENST00000594806 ATP2A1O14983 1001 aa30.17■■■□□ 2.42
TRIM28-204ENST00000594806 PEX10O60683 326 aa30.17■■■□□ 2.42
TRIM28-204ENST00000594806 HMGB1P09429 215 aaKnown RBP30.17■■■□□ 2.42
TRIM28-204ENST00000594806 OAZ1P54368 228 aa30.17■■■□□ 2.42
TRIM28-204ENST00000594806 ANTXR2P58335 489 aa30.17■■■□□ 2.42
TRIM28-204ENST00000594806 ZNF543Q08ER8 600 aa30.17■■■□□ 2.42
TRIM28-204ENST00000594806 TMEM132BQ14DG7 1078 aa30.17■■■□□ 2.42
TRIM28-204ENST00000594806 REPS2Q8NFH8 660 aa30.17■■■□□ 2.42
TRIM28-204ENST00000594806 IGDCC4Q8TDY8 1250 aa30.17■■■□□ 2.42
TRIM28-204ENST00000594806 USP26Q9BXU7 913 aa30.17■■■□□ 2.42
TRIM28-204ENST00000594806 PORCNQ9H237 461 aa30.17■■■□□ 2.42
TRIM28-204ENST00000594806 MROH8Q9H579 483 aa30.17■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 164.1 ms