RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	CHRNE	Q04844	493 aa		4.55	□□□□□ -1.68
CD44-238	ENST00000534296	NBPF9	Q3BBW0	867 aa		4.55	□□□□□ -1.68
CD44-238	ENST00000534296	TMEM67	Q5HYA8	995 aa		4.55	□□□□□ -1.68
CD44-238	ENST00000534296	MPZL3	Q6UWV2	235 aa		4.55	□□□□□ -1.68
CD44-238	ENST00000534296	RNF111	Q6ZNA4	994 aa		4.55	□□□□□ -1.68
CD44-238	ENST00000534296	SPPL2C	Q8IUH8	684 aa		4.55	□□□□□ -1.68
CD44-238	ENST00000534296	DAGLB	Q8NCG7	672 aa		4.55	□□□□□ -1.68
CD44-238	ENST00000534296	SLC9A7	Q96T83	725 aa		4.55	□□□□□ -1.68
CD44-238	ENST00000534296	KRTAP4-12	Q9BQ66	201 aa		4.55	□□□□□ -1.68
CD44-238	ENST00000534296	DSCC1	Q9BVC3	393 aa		4.55	□□□□□ -1.68
CD44-238	ENST00000534296	SRRT	Q9BXP5	876 aa	Known RBP	4.55	□□□□□ -1.68
CD44-238	ENST00000534296	ANTXR1	Q9H6X2	564 aa		4.55	□□□□□ -1.68
CD44-238	ENST00000534296	PRR13	Q9NZ81	148 aa		4.55	□□□□□ -1.68
CD44-238	ENST00000534296	PCDHA11	Q9Y5I1	949 aa		4.55	□□□□□ -1.68
CD44-238	ENST00000534296	FITM1	A5D6W6	292 aa		4.54	□□□□□ -1.68
CD44-238	ENST00000534296	FAM86C2P	A6NEL3	165 aa		4.54	□□□□□ -1.68
CD44-238	ENST00000534296	SIGLEC6	O43699	453 aa		4.54	□□□□□ -1.68
CD44-238	ENST00000534296	NASP	P49321	788 aa	Predicted RBP	4.54	□□□□□ -1.68
CD44-238	ENST00000534296	HK2	P52789	917 aa		4.54	□□□□□ -1.68
CD44-238	ENST00000534296	PMS1	P54277	932 aa	Known RBP	4.54	□□□□□ -1.68
CD44-238	ENST00000534296	NOL9	Q5SY16	702 aa	Known RBP	4.54	□□□□□ -1.68
CD44-238	ENST00000534296	CWF19L1	Q69YN2	538 aa	Known RBP	4.54	□□□□□ -1.68
CD44-238	ENST00000534296	CCDC81	Q6ZN84	652 aa		4.54	□□□□□ -1.68
CD44-238	ENST00000534296	LSR	Q86X29	649 aa	Predicted RBP	4.54	□□□□□ -1.68
CD44-238	ENST00000534296	LILRA2	Q8N149	483 aa		4.54	□□□□□ -1.68
CD44-238	ENST00000534296	C19orf47	Q8N9M1	422 aa	Known RBP	4.54	□□□□□ -1.68
CD44-238	ENST00000534296	PDZD8	Q8NEN9	1154 aa		4.54	□□□□□ -1.68
CD44-238	ENST00000534296	MYLIP	Q8WY64	445 aa		4.54	□□□□□ -1.68
CD44-238	ENST00000534296	VWCE	Q96DN2	955 aa		4.54	□□□□□ -1.68
CD44-238	ENST00000534296	ZNF512B	Q96KM6	892 aa	Predicted RBP	4.54	□□□□□ -1.68
CD44-238	ENST00000534296	HDAC8	Q9BY41	377 aa		4.54	□□□□□ -1.68
CD44-238	ENST00000534296	PHAX	Q9H814	394 aa	Known RBP	4.54	□□□□□ -1.68
CD44-238	ENST00000534296	CHST7	Q9NS84	486 aa		4.54	□□□□□ -1.68
CD44-238	ENST00000534296	SHISA3	A0PJX4	238 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296	BTBD11	A6QL63	1104 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296		E9PSI1	815 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296	PRAMEF1	O95521	474 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296	SSB	P05455	408 aa	Known RBP eCLIP	4.53	□□□□□ -1.68
CD44-238	ENST00000534296	GLI1	P08151	1106 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296	RPL10	P27635	214 aa	Known RBP	4.53	□□□□□ -1.68
CD44-238	ENST00000534296	RBM10	P98175	930 aa	Known RBP	4.53	□□□□□ -1.68
CD44-238	ENST00000534296	AUH	Q13825	339 aa	Known RBP	4.53	□□□□□ -1.68
CD44-238	ENST00000534296	TCEAL1	Q15170	157 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296	PKN1	Q16512	942 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296	TMEM192	Q8IY95	271 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296	ANKS4B	Q8N8V4	417 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296	ABHD4	Q8TB40	342 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296	FMNL2	Q96PY5	1086 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296	SLC38A3	Q99624	504 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296	PRDM14	Q9GZV8	571 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296	GBP3	Q9H0R5	595 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296	ACBD3	Q9H3P7	528 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296	ZMYM5	Q9UJ78	669 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296	TCFL5	Q9UL49	500 aa		4.53	□□□□□ -1.68
CD44-238	ENST00000534296	DNAJC25-GNG10	A0A024R161	153 aa		4.52	□□□□□ -1.69
CD44-238	ENST00000534296	LRRC10B	A6NIK2	292 aa		4.52	□□□□□ -1.69
CD44-238	ENST00000534296	WASH4P	A8MWX3	477 aa		4.52	□□□□□ -1.69
CD44-238	ENST00000534296	FARP2	O94887	1054 aa	Predicted RBP	4.52	□□□□□ -1.69
CD44-238	ENST00000534296	SYP	P08247	313 aa		4.52	□□□□□ -1.69
CD44-238	ENST00000534296	NAT2	P11245	290 aa		4.52	□□□□□ -1.69
CD44-238	ENST00000534296	ITGA4	P13612	1032 aa		4.52	□□□□□ -1.69
CD44-238	ENST00000534296	GIPR	P48546	466 aa		4.52	□□□□□ -1.69
CD44-238	ENST00000534296	PPP2R5E	Q16537	467 aa		4.52	□□□□□ -1.69
CD44-238	ENST00000534296	RALGPS1	Q5JS13	557 aa		4.52	□□□□□ -1.69
CD44-238	ENST00000534296	UNC5A	Q6ZN44	842 aa		4.52	□□□□□ -1.69
CD44-238	ENST00000534296	WAPL	Q7Z5K2	1190 aa		4.52	□□□□□ -1.69
CD44-238	ENST00000534296	TMC3	Q7Z5M5	1100 aa		4.52	□□□□□ -1.69
CD44-238	ENST00000534296	C7orf61	Q8IZ16	206 aa		4.52	□□□□□ -1.69
CD44-238	ENST00000534296	LINC00116	Q8NCU8	138 aa		4.52	□□□□□ -1.69
CD44-238	ENST00000534296	TCTN2	Q96GX1	697 aa		4.52	□□□□□ -1.69
CD44-238	ENST00000534296	GFOD1	Q9NXC2	390 aa		4.52	□□□□□ -1.69
CD44-238	ENST00000534296	SF3B6	Q9Y3B4	125 aa	Known RBP	4.52	□□□□□ -1.69
CD44-238	ENST00000534296	HPX	P02790	462 aa		4.51	□□□□□ -1.69
CD44-238	ENST00000534296	GSN	P06396	782 aa		4.51	□□□□□ -1.69
CD44-238	ENST00000534296	ZGLP1	P0C6A0	271 aa		4.51	□□□□□ -1.69
CD44-238	ENST00000534296	ACR	P10323	421 aa		4.51	□□□□□ -1.69
CD44-238	ENST00000534296	SLC7A5	Q01650	507 aa		4.51	□□□□□ -1.69
CD44-238	ENST00000534296	TEK	Q02763	1124 aa		4.51	□□□□□ -1.69
CD44-238	ENST00000534296	SLC14A2	Q15849	920 aa		4.51	□□□□□ -1.69
CD44-238	ENST00000534296	GNPTAB	Q3T906	1256 aa		4.51	□□□□□ -1.69
CD44-238	ENST00000534296	TNNI3K	Q59H18	835 aa		4.51	□□□□□ -1.69
CD44-238	ENST00000534296	TDRD10	Q5VZ19	366 aa	Known RBP	4.51	□□□□□ -1.69
CD44-238	ENST00000534296	KSR1	Q8IVT5	923 aa		4.51	□□□□□ -1.69
CD44-238	ENST00000534296	NAT16	Q8N8M0	369 aa		4.51	□□□□□ -1.69
CD44-238	ENST00000534296	FOXP3	Q9BZS1	431 aa		4.51	□□□□□ -1.69
CD44-238	ENST00000534296	ADAMTS10	Q9H324	1103 aa		4.51	□□□□□ -1.69
CD44-238	ENST00000534296	CWC22	Q9HCG8	908 aa	Known RBP	4.51	□□□□□ -1.69
CD44-238	ENST00000534296	ZNF214	Q9UL59	606 aa	Predicted RBP	4.51	□□□□□ -1.69
CD44-238	ENST00000534296	MEIS1	O00470	390 aa		4.5	□□□□□ -1.69
CD44-238	ENST00000534296	FKTN	O75072	461 aa		4.5	□□□□□ -1.69
CD44-238	ENST00000534296	TP53	P04637	393 aa	Predicted RBP	4.5	□□□□□ -1.69
CD44-238	ENST00000534296	BMP8B	P34820	402 aa		4.5	□□□□□ -1.69
CD44-238	ENST00000534296	KIR2DL1	P43626	348 aa	Predicted RBP	4.5	□□□□□ -1.69
CD44-238	ENST00000534296	KIR2DL2	P43627	348 aa	Predicted RBP	4.5	□□□□□ -1.69
CD44-238	ENST00000534296	NOP2	P46087	812 aa	Known RBP	4.5	□□□□□ -1.69
CD44-238	ENST00000534296	SNW1	Q13573	536 aa	Known RBP	4.5	□□□□□ -1.69
CD44-238	ENST00000534296	SNX17	Q15036	470 aa		4.5	□□□□□ -1.69
CD44-238	ENST00000534296	NR0B2	Q15466	257 aa		4.5	□□□□□ -1.69
CD44-238	ENST00000534296	ANKRD39	Q53RE8	183 aa		4.5	□□□□□ -1.69
CD44-238	ENST00000534296	HEATR6	Q6AI08	1181 aa	Known RBP	4.5	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms