RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 ZNF444Q8N0Y2 327 aaPredicted RBP15.54■□□□□ 0.08
CPSF1-204ENST00000529288 OTUD7AQ8TE49 926 aaPredicted RBP15.54■□□□□ 0.08
CPSF1-204ENST00000529288 MMP19Q99542 508 aa15.54■□□□□ 0.08
CPSF1-204ENST00000529288 FSD1Q9BTV5 496 aa15.54■□□□□ 0.08
CPSF1-204ENST00000529288 CLIP2Q9UDT6 1046 aa15.54■□□□□ 0.08
CPSF1-204ENST00000529288 SOX1O00570 391 aaPredicted RBP15.53■□□□□ 0.08
CPSF1-204ENST00000529288 ERC2O15083 957 aa15.53■□□□□ 0.08
CPSF1-204ENST00000529288 SLC25A27O95847 323 aa15.53■□□□□ 0.08
CPSF1-204ENST00000529288 GNAT2P19087 354 aa15.53■□□□□ 0.08
CPSF1-204ENST00000529288 STAT3P40763 770 aa15.53■□□□□ 0.08
CPSF1-204ENST00000529288 OLFML2BQ68BL8 750 aa15.53■□□□□ 0.08
CPSF1-204ENST00000529288 GIMAP6Q6P9H5 292 aa15.53■□□□□ 0.08
CPSF1-204ENST00000529288 LRCH3Q96II8 777 aa15.53■□□□□ 0.08
CPSF1-204ENST00000529288 SEC62Q99442 399 aaKnown RBP15.53■□□□□ 0.08
CPSF1-204ENST00000529288 GDF15Q99988 308 aa15.53■□□□□ 0.08
CPSF1-204ENST00000529288 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.53■□□□□ 0.08
CPSF1-204ENST00000529288 UBE2OQ9C0C9 1292 aaKnown RBP15.53■□□□□ 0.08
CPSF1-204ENST00000529288 ISY1Q9ULR0 285 aaKnown RBP15.53■□□□□ 0.08
CPSF1-204ENST00000529288 CTDP1Q9Y5B0 961 aaPredicted RBP15.53■□□□□ 0.08
CPSF1-204ENST00000529288 CEP290O15078 2479 aa15.52■□□□□ 0.08
CPSF1-204ENST00000529288 A0A1W2PPC1 479 aa15.52■□□□□ 0.08
CPSF1-204ENST00000529288 PATL2C9JE40 543 aaKnown RBP15.52■□□□□ 0.08
CPSF1-204ENST00000529288 F5H6K3 240 aa15.52■□□□□ 0.08
CPSF1-204ENST00000529288 VWA5AO00534 786 aa15.52■□□□□ 0.08
CPSF1-204ENST00000529288 PGK2P07205 417 aa15.52■□□□□ 0.08
CPSF1-204ENST00000529288 CYBAP13498 195 aa15.52■□□□□ 0.08
CPSF1-204ENST00000529288 MDM2Q00987 491 aaPredicted RBP15.52■□□□□ 0.08
CPSF1-204ENST00000529288 KLRC3Q07444 240 aa15.52■□□□□ 0.08
CPSF1-204ENST00000529288 KCTD2Q14681 263 aa15.52■□□□□ 0.08
CPSF1-204ENST00000529288 CHMP4CQ96CF2 233 aa15.52■□□□□ 0.08
CPSF1-204ENST00000529288 EPB41L4AQ9HCS5 686 aaPredicted RBP15.52■□□□□ 0.08
CPSF1-204ENST00000529288 PPP1R9AQ9ULJ8 1098 aa15.52■□□□□ 0.08
CPSF1-204ENST00000529288 TTC41PQ6P2S7 1318 aa15.51■□□□□ 0.07
CPSF1-204ENST00000529288 ANKRD45Q5TZF3 282 aa15.51■□□□□ 0.07
CPSF1-204ENST00000529288 RIOX2Q8IUF8 465 aa15.51■□□□□ 0.07
CPSF1-204ENST00000529288 IFNL3Q8IZI9 196 aa15.51■□□□□ 0.07
CPSF1-204ENST00000529288 ABRAQ8N0Z2 381 aa15.51■□□□□ 0.07
CPSF1-204ENST00000529288 ARRDC4Q8NCT1 418 aa15.51■□□□□ 0.07
CPSF1-204ENST00000529288 MAML3Q96JK9 1138 aa15.51■□□□□ 0.07
CPSF1-204ENST00000529288 SLF1Q9BQI6 1058 aa15.51■□□□□ 0.07
CPSF1-204ENST00000529288 NACAP1Q9BZK3 213 aa15.51■□□□□ 0.07
CPSF1-204ENST00000529288 ZNF287Q9HBT7 754 aa15.51■□□□□ 0.07
CPSF1-204ENST00000529288 KBTBD13C9JR72 458 aa15.5■□□□□ 0.07
CPSF1-204ENST00000529288 DNM1LO00429 736 aa15.5■□□□□ 0.07
CPSF1-204ENST00000529288 SEPT4O43236 478 aa15.5■□□□□ 0.07
CPSF1-204ENST00000529288 NDUFB10O96000 172 aa15.5■□□□□ 0.07
CPSF1-204ENST00000529288 BMP8BP34820 402 aa15.5■□□□□ 0.07
CPSF1-204ENST00000529288 RRP1P56182 461 aaKnown RBP15.5■□□□□ 0.07
CPSF1-204ENST00000529288 CPXCR1Q8N123 301 aa15.5■□□□□ 0.07
CPSF1-204ENST00000529288 KIFC2Q96AC6 838 aa15.5■□□□□ 0.07
CPSF1-204ENST00000529288 CRBNQ96SW2 442 aa15.5■□□□□ 0.07
CPSF1-204ENST00000529288 NAPBQ9H115 298 aa15.5■□□□□ 0.07
CPSF1-204ENST00000529288 NYAP2Q9P242 653 aa15.5■□□□□ 0.07
CPSF1-204ENST00000529288 ADAMTS5Q9UNA0 930 aa15.5■□□□□ 0.07
CPSF1-204ENST00000529288 ATP11BQ9Y2G3 1177 aa15.5■□□□□ 0.07
CPSF1-204ENST00000529288 BAZ2AQ9UIF9 1905 aaKnown RBP15.5■□□□□ 0.07
CPSF1-204ENST00000529288 TRIOBPQ9H2D6 2365 aa15.49■□□□□ 0.07
CPSF1-204ENST00000529288 ZBED4O75132 1171 aa15.49■□□□□ 0.07
CPSF1-204ENST00000529288 SLC3A2P08195 630 aaKnown RBP15.49■□□□□ 0.07
CPSF1-204ENST00000529288 TSPY3P0CV98 308 aa15.49■□□□□ 0.07
CPSF1-204ENST00000529288 TSPY8P0CW00 308 aa15.49■□□□□ 0.07
CPSF1-204ENST00000529288 MX1P20591 662 aa15.49■□□□□ 0.07
CPSF1-204ENST00000529288 FAM47AQ5JRC9 791 aa15.49■□□□□ 0.07
CPSF1-204ENST00000529288 SNRNP48Q6IEG0 339 aaKnown RBP15.49■□□□□ 0.07
CPSF1-204ENST00000529288 LRRC47Q8N1G4 583 aaKnown RBP15.49■□□□□ 0.07
CPSF1-204ENST00000529288 PI4K2BQ8TCG2 481 aa15.49■□□□□ 0.07
CPSF1-204ENST00000529288 FERMT2Q96AC1 680 aa15.49■□□□□ 0.07
CPSF1-204ENST00000529288 DDX11Q96FC9 970 aa15.49■□□□□ 0.07
CPSF1-204ENST00000529288 YTHDC1Q96MU7 727 aaKnown RBP15.49■□□□□ 0.07
CPSF1-204ENST00000529288 LBHD1Q9BQE6 289 aaPredicted RBP15.49■□□□□ 0.07
CPSF1-204ENST00000529288 PRKAG2Q9UGJ0 569 aa15.49■□□□□ 0.07
CPSF1-204ENST00000529288 RTP1P59025 263 aa15.48■□□□□ 0.07
CPSF1-204ENST00000529288 TFAP4Q01664 338 aa15.48■□□□□ 0.07
CPSF1-204ENST00000529288 PDE4BQ07343 736 aa15.48■□□□□ 0.07
CPSF1-204ENST00000529288 CCDC129Q6ZRS4 1044 aa15.48■□□□□ 0.07
CPSF1-204ENST00000529288 TDHQ8IZJ6 230 aa15.48■□□□□ 0.07
CPSF1-204ENST00000529288 CEP95Q96GE4 821 aa15.48■□□□□ 0.07
CPSF1-204ENST00000529288 RAVER2Q9HCJ3 691 aaKnown RBP15.48■□□□□ 0.07
CPSF1-204ENST00000529288 ZNF214Q9UL59 606 aaPredicted RBP15.48■□□□□ 0.07
CPSF1-204ENST00000529288 IGHA2P01877 340 aa15.47■□□□□ 0.07
CPSF1-204ENST00000529288 TAL1P17542 331 aaPredicted RBP15.47■□□□□ 0.07
CPSF1-204ENST00000529288 COPB2P35606 906 aa15.47■□□□□ 0.07
CPSF1-204ENST00000529288 ADCYAP1R1P41586 468 aa15.47■□□□□ 0.07
CPSF1-204ENST00000529288 PPARAQ07869 468 aa15.47■□□□□ 0.07
CPSF1-204ENST00000529288 ZNF792Q3KQV3 632 aa15.47■□□□□ 0.07
CPSF1-204ENST00000529288 ZMYM1Q5SVZ6 1142 aa15.47■□□□□ 0.07
CPSF1-204ENST00000529288 PRPF38AQ8NAV1 312 aaKnown RBP15.47■□□□□ 0.07
CPSF1-204ENST00000529288 REPS2Q8NFH8 660 aa15.47■□□□□ 0.07
CPSF1-204ENST00000529288 TINF2Q9BSI4 451 aa15.47■□□□□ 0.07
CPSF1-204ENST00000529288 TEX13BQ9BXU2 312 aa15.47■□□□□ 0.07
CPSF1-204ENST00000529288 PRDM5Q9NQX1 630 aaPredicted RBP15.47■□□□□ 0.07
CPSF1-204ENST00000529288 MTMR4Q9NYA4 1195 aa15.47■□□□□ 0.07
CPSF1-204ENST00000529288 ROBO3Q96MS0 1386 aa15.47■□□□□ 0.07
CPSF1-204ENST00000529288 IGKV6D-41A0A0C4DH26 115 aa15.46■□□□□ 0.07
CPSF1-204ENST00000529288 TTLL1O95922 423 aa15.46■□□□□ 0.07
CPSF1-204ENST00000529288 RARBP10826 455 aa15.46■□□□□ 0.07
CPSF1-204ENST00000529288 CTDSPL2Q05D32 466 aa15.46■□□□□ 0.07
CPSF1-204ENST00000529288 IKQ13123 557 aaPredicted RBP15.46■□□□□ 0.07
CPSF1-204ENST00000529288 LRRC41Q15345 812 aa15.46■□□□□ 0.07
CPSF1-204ENST00000529288 SLFN13Q68D06 897 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms