RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 ANKS4BQ8N8V4 417 aa9□□□□□ -0.97
NUP54-209ENST00000510569 CWC22Q9HCG8 908 aaKnown RBP9□□□□□ -0.97
NUP54-209ENST00000510569 C1QTNF9P0C862 333 aa8.99□□□□□ -0.97
NUP54-209ENST00000510569 SPPL2CQ8IUH8 684 aa8.99□□□□□ -0.97
NUP54-209ENST00000510569 SLC6A17Q9H1V8 727 aa8.99□□□□□ -0.97
NUP54-209ENST00000510569 NFIBO00712 420 aa8.98□□□□□ -0.97
NUP54-209ENST00000510569 CFPP27918 469 aa8.98□□□□□ -0.97
NUP54-209ENST00000510569 ZNF165P49910 485 aa8.98□□□□□ -0.97
NUP54-209ENST00000510569 GK5Q6ZS86 529 aa8.98□□□□□ -0.97
NUP54-209ENST00000510569 TMC3Q7Z5M5 1100 aa8.98□□□□□ -0.97
NUP54-209ENST00000510569 ANKLE2Q86XL3 938 aa8.98□□□□□ -0.97
NUP54-209ENST00000510569 ZNF655Q8N720 491 aaPredicted RBP8.98□□□□□ -0.97
NUP54-209ENST00000510569 SLC26A8Q96RN1 970 aa8.98□□□□□ -0.97
NUP54-209ENST00000510569 KCNK12Q9HB15 430 aa8.98□□□□□ -0.97
NUP54-209ENST00000510569 CD320Q9NPF0 282 aa8.98□□□□□ -0.97
NUP54-209ENST00000510569 YBX2Q9Y2T7 364 aaKnown RBP8.98□□□□□ -0.97
NUP54-209ENST00000510569 TNFRSF10CO14798 259 aa8.97□□□□□ -0.97
NUP54-209ENST00000510569 GLDCP23378 1020 aa8.97□□□□□ -0.97
NUP54-209ENST00000510569 SNW1Q13573 536 aaKnown RBP8.97□□□□□ -0.97
NUP54-209ENST00000510569 SNX17Q15036 470 aa8.97□□□□□ -0.97
NUP54-209ENST00000510569 LRRFIP1Q32MZ4 808 aaKnown RBP8.97□□□□□ -0.97
NUP54-209ENST00000510569 FBLN7Q53RD9 439 aa8.97□□□□□ -0.97
NUP54-209ENST00000510569 KIAA0825Q8IV33 1275 aa8.97□□□□□ -0.97
NUP54-209ENST00000510569 USHBP1Q8N6Y0 703 aa8.97□□□□□ -0.97
NUP54-209ENST00000510569 NKD1Q969G9 470 aa8.97□□□□□ -0.97
NUP54-209ENST00000510569 TCTN2Q96GX1 697 aa8.97□□□□□ -0.97
NUP54-209ENST00000510569 CLEC3AO75596 197 aa8.96□□□□□ -0.98
NUP54-209ENST00000510569 NME1P15531 152 aaKnown RBP8.96□□□□□ -0.98
NUP54-209ENST00000510569 LRRC56Q8IYG6 542 aaPredicted RBP8.96□□□□□ -0.98
NUP54-209ENST00000510569 SHISA4Q96DD7 197 aa8.96□□□□□ -0.98
NUP54-209ENST00000510569 INTS4Q96HW7 963 aaKnown RBP8.96□□□□□ -0.98
NUP54-209ENST00000510569 EAF1Q96JC9 268 aaPredicted RBP8.96□□□□□ -0.98
NUP54-209ENST00000510569 TMEM82A0PJX8 343 aa8.95□□□□□ -0.98
NUP54-209ENST00000510569 NOTOA8MTQ0 251 aa8.95□□□□□ -0.98
NUP54-209ENST00000510569 SIGLEC6O43699 453 aa8.95□□□□□ -0.98
NUP54-209ENST00000510569 TMEM253P0C7T8 217 aa8.95□□□□□ -0.98
NUP54-209ENST00000510569 PCBP3P57721 371 aaKnown RBP8.95□□□□□ -0.98
NUP54-209ENST00000510569 BBS9Q3SYG4 887 aa8.95□□□□□ -0.98
NUP54-209ENST00000510569 TMCO4Q5TGY1 634 aa8.95□□□□□ -0.98
NUP54-209ENST00000510569 TMEM87AQ8NBN3 555 aa8.95□□□□□ -0.98
NUP54-209ENST00000510569 LINC00116Q8NCU8 138 aa8.95□□□□□ -0.98
NUP54-209ENST00000510569 SPON2Q9BUD6 331 aa8.95□□□□□ -0.98
NUP54-209ENST00000510569 FOXP3Q9BZS1 431 aa8.95□□□□□ -0.98
NUP54-209ENST00000510569 ANTXR1Q9H6X2 564 aa8.95□□□□□ -0.98
NUP54-209ENST00000510569 TCFL5Q9UL49 500 aa8.95□□□□□ -0.98
NUP54-209ENST00000510569 PRAMEF1O95521 474 aa8.94□□□□□ -0.98
NUP54-209ENST00000510569 MCM4P33991 863 aa8.94□□□□□ -0.98
NUP54-209ENST00000510569 ZNF76P36508 570 aa8.94□□□□□ -0.98
NUP54-209ENST00000510569 TMEM192Q8IY95 271 aa8.94□□□□□ -0.98
NUP54-209ENST00000510569 ZSCAN18Q8TBC5 510 aaPredicted RBP8.94□□□□□ -0.98
NUP54-209ENST00000510569 MAP6Q96JE9 813 aa8.94□□□□□ -0.98
NUP54-209ENST00000510569 PRDM14Q9GZV8 571 aa8.94□□□□□ -0.98
NUP54-209ENST00000510569 GPR160Q9UJ42 338 aa8.94□□□□□ -0.98
NUP54-209ENST00000510569 ZNRF3Q9ULT6 936 aa8.94□□□□□ -0.98
NUP54-209ENST00000510569 ETV2O00321 342 aaPredicted RBP8.93□□□□□ -0.98
NUP54-209ENST00000510569 PSPNO60542 156 aa8.93□□□□□ -0.98
NUP54-209ENST00000510569 RPL10P27635 214 aaKnown RBP8.93□□□□□ -0.98
NUP54-209ENST00000510569 KIR2DL1P43626 348 aaPredicted RBP8.93□□□□□ -0.98
NUP54-209ENST00000510569 KIR2DL2P43627 348 aaPredicted RBP8.93□□□□□ -0.98
NUP54-209ENST00000510569 LCE4AQ5TA78 99 aa8.93□□□□□ -0.98
NUP54-209ENST00000510569 ATG14Q6ZNE5 492 aa8.93□□□□□ -0.98
NUP54-209ENST00000510569 ZNF512BQ96KM6 892 aaPredicted RBP8.93□□□□□ -0.98
NUP54-209ENST00000510569 METTL5Q9NRN9 209 aaKnown RBP8.93□□□□□ -0.98
NUP54-209ENST00000510569 PEX10O60683 326 aa8.92□□□□□ -0.98
NUP54-209ENST00000510569 EFEMP2O95967 443 aa8.92□□□□□ -0.98
NUP54-209ENST00000510569 FANCCQ00597 558 aa8.92□□□□□ -0.98
NUP54-209ENST00000510569 LCNL1Q6ZST4 164 aa8.92□□□□□ -0.98
NUP54-209ENST00000510569 WAPLQ7Z5K2 1190 aa8.92□□□□□ -0.98
NUP54-209ENST00000510569 NLRX1Q86UT6 975 aa8.92□□□□□ -0.98
NUP54-209ENST00000510569 SIAH1Q8IUQ4 282 aa8.92□□□□□ -0.98
NUP54-209ENST00000510569 SLC6A18Q96N87 628 aa8.92□□□□□ -0.98
NUP54-209ENST00000510569 TCAF2A6NFQ2 919 aa8.91□□□□□ -0.98
NUP54-209ENST00000510569 NPIPB6E9PJ23 425 aa8.91□□□□□ -0.98
NUP54-209ENST00000510569 NRDCO43847 1150 aa8.91□□□□□ -0.98
NUP54-209ENST00000510569 USP2O75604 605 aaPredicted RBP8.91□□□□□ -0.98
NUP54-209ENST00000510569 SYPP08247 313 aa8.91□□□□□ -0.98
NUP54-209ENST00000510569 KCNA10Q16322 511 aa8.91□□□□□ -0.98
NUP54-209ENST00000510569 SLC9A7Q96T83 725 aa8.91□□□□□ -0.98
NUP54-209ENST00000510569 BACH2Q9BYV9 841 aa8.91□□□□□ -0.98
NUP54-209ENST00000510569 MCOLN1Q9GZU1 580 aa8.91□□□□□ -0.98
NUP54-209ENST00000510569 ZNF552Q9H707 407 aaPredicted RBP8.91□□□□□ -0.98
NUP54-209ENST00000510569 PRR13Q9NZ81 148 aa8.91□□□□□ -0.98
NUP54-209ENST00000510569 MYOCOSA0A1B0GUC4 107 aa8.9□□□□□ -0.98
NUP54-209ENST00000510569 SEMA7AO75326 666 aa8.9□□□□□ -0.98
NUP54-209ENST00000510569 INTS3Q68E01 1043 aaKnown RBP8.9□□□□□ -0.98
NUP54-209ENST00000510569 USP48Q86UV5 1035 aa8.9□□□□□ -0.98
NUP54-209ENST00000510569 TAB3Q8N5C8 712 aaPredicted RBP8.9□□□□□ -0.98
NUP54-209ENST00000510569 HHIPL1Q96JK4 782 aa8.9□□□□□ -0.98
NUP54-209ENST00000510569 MKRN2Q9H000 416 aaKnown RBP8.9□□□□□ -0.98
NUP54-209ENST00000510569 CHST7Q9NS84 486 aa8.9□□□□□ -0.98
NUP54-209ENST00000510569 ZMYM5Q9UJ78 669 aa8.9□□□□□ -0.98
NUP54-209ENST00000510569 IMPDH2P12268 514 aa8.89□□□□□ -0.99
NUP54-209ENST00000510569 KCNN1Q92952 543 aa8.89□□□□□ -0.99
NUP54-209ENST00000510569 FCRL2Q96LA5 508 aaPredicted RBP8.89□□□□□ -0.99
NUP54-209ENST00000510569 CRTAC1Q9NQ79 661 aa8.89□□□□□ -0.99
NUP54-209ENST00000510569 SUCOQ9UBS9 1254 aaKnown RBP8.89□□□□□ -0.99
NUP54-209ENST00000510569 SMG5Q9UPR3 1016 aaKnown RBP8.89□□□□□ -0.99
NUP54-209ENST00000510569 PCDHB12Q9Y5F1 795 aa8.89□□□□□ -0.99
NUP54-209ENST00000510569 SSU72P8A0A1W2PR75 194 aa8.88□□□□□ -0.99
NUP54-209ENST00000510569 ZBTB7CA1YPR0 619 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms