RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 IRX3P78415 501 aaPredicted RBP17.03■□□□□ 0.32
BRCA1-223ENST00000494123 USP17L24Q0WX57 530 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 GPAT2Q6NUI2 795 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 SGMS1Q86VZ5 419 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 ZNF654Q8IZM8 581 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 FAM43AQ8N2R8 423 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 DNAJC5GQ8N7S2 189 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 KIF2CQ99661 725 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 PNMA3Q9UL41 463 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 ALDH1A1P00352 501 aa17.02■□□□□ 0.31
BRCA1-223ENST00000494123 PDHBP11177 359 aa17.02■□□□□ 0.31
BRCA1-223ENST00000494123 RABEP1Q15276 862 aa17.02■□□□□ 0.31
BRCA1-223ENST00000494123 NUP133Q8WUM0 1156 aa17.02■□□□□ 0.31
BRCA1-223ENST00000494123 ZCCHC17Q9NP64 241 aaKnown RBP17.02■□□□□ 0.31
BRCA1-223ENST00000494123 SLC45A1Q9Y2W3 748 aa17.02■□□□□ 0.31
BRCA1-223ENST00000494123 KLF18A0A0U1RQI7 1052 aa17.01■□□□□ 0.31
BRCA1-223ENST00000494123 DDAH1O94760 285 aa17.01■□□□□ 0.31
BRCA1-223ENST00000494123 HOXA7P31268 230 aaPredicted RBP17.01■□□□□ 0.31
BRCA1-223ENST00000494123 APOBRQ0VD83 1088 aa17.01■□□□□ 0.31
BRCA1-223ENST00000494123 IKQ13123 557 aaPredicted RBP17.01■□□□□ 0.31
BRCA1-223ENST00000494123 ANKRD1Q15327 319 aa17.01■□□□□ 0.31
BRCA1-223ENST00000494123 SAMD1Q6SPF0 538 aaPredicted RBP17.01■□□□□ 0.31
BRCA1-223ENST00000494123 KCTD1Q719H9 257 aa17.01■□□□□ 0.31
BRCA1-223ENST00000494123 RASGRP2Q7LDG7 609 aa17.01■□□□□ 0.31
BRCA1-223ENST00000494123 FBXL16Q8N461 479 aa17.01■□□□□ 0.31
BRCA1-223ENST00000494123 FRMPD2Q68DX3 1309 aaPredicted RBP17.01■□□□□ 0.31
BRCA1-223ENST00000494123 FLOT1O75955 427 aa17■□□□□ 0.31
BRCA1-223ENST00000494123 PARP1P09874 1014 aaKnown RBP17■□□□□ 0.31
BRCA1-223ENST00000494123 CALM1P0DP23 149 aa17■□□□□ 0.31
BRCA1-223ENST00000494123 CALM2P0DP24 149 aa17■□□□□ 0.31
BRCA1-223ENST00000494123 CALM3P0DP25 149 aa17■□□□□ 0.31
BRCA1-223ENST00000494123 MAP2K1Q02750 393 aaPredicted RBP17■□□□□ 0.31
BRCA1-223ENST00000494123 TAF1CQ15572 869 aaPredicted RBP17■□□□□ 0.31
BRCA1-223ENST00000494123 CATSPERGQ6ZRH7 1159 aa17■□□□□ 0.31
BRCA1-223ENST00000494123 MICU3Q86XE3 530 aa17■□□□□ 0.31
BRCA1-223ENST00000494123 PARK7Q99497 189 aaKnown RBP17■□□□□ 0.31
BRCA1-223ENST00000494123 MYL10Q9BUA6 226 aa17■□□□□ 0.31
BRCA1-223ENST00000494123 AGXT2Q9BYV1 514 aa17■□□□□ 0.31
BRCA1-223ENST00000494123 TMEM232C9JQI7 657 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 SNHG28P0DPA3 235 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 AK2P54819 239 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 TROAPQ12815 778 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 TOB2Q14106 344 aaPredicted RBP16.99■□□□□ 0.31
BRCA1-223ENST00000494123 ASPRV1Q53RT3 343 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 GPATCH4Q5T3I0 446 aaKnown RBP16.99■□□□□ 0.31
BRCA1-223ENST00000494123 APOA5Q6Q788 366 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 RAB11FIP4Q86YS3 637 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 CTCFLQ8NI51 663 aaPredicted RBP16.99■□□□□ 0.31
BRCA1-223ENST00000494123 SMCR8Q8TEV9 937 aaPredicted RBP16.99■□□□□ 0.31
BRCA1-223ENST00000494123 BEGAINQ9BUH8 593 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 ASCC2Q9H1I8 757 aaPredicted RBP16.99■□□□□ 0.31
BRCA1-223ENST00000494123 ALDH8A1Q9H2A2 487 aaPredicted RBP16.99■□□□□ 0.31
BRCA1-223ENST00000494123 GPCPD1Q9NPB8 672 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 FEM1BQ9UK73 627 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 BRPF3Q9ULD4 1205 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 GOLGA8BA8MQT2 603 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 ZBTB43O43298 467 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 GOLGA8HP0CJ92 632 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 CYP2C8P10632 490 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 STAT2P52630 851 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 ZNF543Q08ER8 600 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 COG2Q14746 738 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 SLF1Q9BQI6 1058 aa16.99■□□□□ 0.31
BRCA1-223ENST00000494123 ST18O60284 1047 aa16.98■□□□□ 0.31
BRCA1-223ENST00000494123 RXRAP19793 462 aa16.98■□□□□ 0.31
BRCA1-223ENST00000494123 KIF5BP33176 963 aa16.98■□□□□ 0.31
BRCA1-223ENST00000494123 GRM4Q14833 912 aa16.98■□□□□ 0.31
BRCA1-223ENST00000494123 NOL8Q76FK4 1167 aaKnown RBP16.98■□□□□ 0.31
BRCA1-223ENST00000494123 FAM160B2Q86V87 743 aa16.98■□□□□ 0.31
BRCA1-223ENST00000494123 CCDC144CPQ8IYA2 1237 aa16.98■□□□□ 0.31
BRCA1-223ENST00000494123 CHURC1Q8WUH1 139 aa16.98■□□□□ 0.31
BRCA1-223ENST00000494123 MAP3K14Q99558 947 aa16.98■□□□□ 0.31
BRCA1-223ENST00000494123 LARP6Q9BRS8 491 aaKnown RBP16.98■□□□□ 0.31
BRCA1-223ENST00000494123 ZFYVE28Q9HCC9 887 aa16.98■□□□□ 0.31
BRCA1-223ENST00000494123 HOXC10Q9NYD6 342 aa16.98■□□□□ 0.31
BRCA1-223ENST00000494123 IL27Q8NEV9 243 aa16.97■□□□□ 0.31
BRCA1-223ENST00000494123 KIFC2Q96AC6 838 aa16.97■□□□□ 0.31
BRCA1-223ENST00000494123 P2RX7Q99572 595 aaKnown RBP16.97■□□□□ 0.31
BRCA1-223ENST00000494123 FBXO28Q9NVF7 368 aa16.97■□□□□ 0.31
BRCA1-223ENST00000494123 PARP14Q460N5 1801 aa16.97■□□□□ 0.31
BRCA1-223ENST00000494123 GOLGA8AA7E2F4 631 aa16.96■□□□□ 0.31
BRCA1-223ENST00000494123 CA12O43570 354 aa16.96■□□□□ 0.31
BRCA1-223ENST00000494123 DHX16O60231 1041 aaKnown RBP16.96■□□□□ 0.31
BRCA1-223ENST00000494123 TRPA1O75762 1119 aa16.96■□□□□ 0.31
BRCA1-223ENST00000494123 DSG3P32926 999 aa16.96■□□□□ 0.31
BRCA1-223ENST00000494123 METAP2P50579 478 aaKnown RBP eCLIP16.96■□□□□ 0.31
BRCA1-223ENST00000494123 RCAN1P53805 252 aa16.96■□□□□ 0.31
BRCA1-223ENST00000494123 HERVK_113P62684 666 aa16.96■□□□□ 0.31
BRCA1-223ENST00000494123 TTBK2Q6IQ55 1244 aa16.96■□□□□ 0.31
BRCA1-223ENST00000494123 PRPF38AQ8NAV1 312 aaKnown RBP16.96■□□□□ 0.31
BRCA1-223ENST00000494123 FANCBQ8NB91 859 aa16.96■□□□□ 0.31
BRCA1-223ENST00000494123 RNF186Q9NXI6 227 aa16.96■□□□□ 0.31
BRCA1-223ENST00000494123 MAD2L2Q9UI95 211 aa16.96■□□□□ 0.31
BRCA1-223ENST00000494123 PPP1R9AQ9ULJ8 1098 aa16.96■□□□□ 0.31
BRCA1-223ENST00000494123 CTDP1Q9Y5B0 961 aaPredicted RBP16.96■□□□□ 0.31
BRCA1-223ENST00000494123 MYPNQ86TC9 1320 aa16.96■□□□□ 0.31
BRCA1-223ENST00000494123 PALM3A6NDB9 673 aaPredicted RBP16.96■□□□□ 0.3
BRCA1-223ENST00000494123 KLRF2D3W0D1 207 aa16.96■□□□□ 0.3
BRCA1-223ENST00000494123 PLA2G6O60733 806 aa16.96■□□□□ 0.3
BRCA1-223ENST00000494123 SLC16A2P36021 539 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms