RNA–Protein interactions for RNA: ENST00000473345.5

MCF2L-223, Transcript of MCF.2 cell line derived transforming sequence like, human

TSL 3

Gene MCF2L, Length 399 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MCF2L-223	ENST00000473345	C1orf53	Q5VUE5	145 aa		11.68	□□□□□ -0.54
MCF2L-223	ENST00000473345	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.68	□□□□□ -0.54
MCF2L-223	ENST00000473345	C16orf59	Q7L2K0	433 aa		11.68	□□□□□ -0.54
MCF2L-223	ENST00000473345	ITPRIP	Q8IWB1	547 aa		11.68	□□□□□ -0.54
MCF2L-223	ENST00000473345	ARRDC4	Q8NCT1	418 aa		11.68	□□□□□ -0.54
MCF2L-223	ENST00000473345	PANK1	Q8TE04	598 aa		11.68	□□□□□ -0.54
MCF2L-223	ENST00000473345	VCPKMT	Q9H867	229 aa		11.68	□□□□□ -0.54
MCF2L-223	ENST00000473345	ZNF214	Q9UL59	606 aa	Predicted RBP	11.68	□□□□□ -0.54
MCF2L-223	ENST00000473345	COL11A1	P12107	1806 aa	Predicted RBP	11.67	□□□□□ -0.54
MCF2L-223	ENST00000473345	KBTBD13	C9JR72	458 aa		11.67	□□□□□ -0.54
MCF2L-223	ENST00000473345	KIAA0355	O15063	1070 aa		11.67	□□□□□ -0.54
MCF2L-223	ENST00000473345	PTGS1	P23219	599 aa		11.67	□□□□□ -0.54
MCF2L-223	ENST00000473345	FAAP100	Q0VG06	881 aa		11.67	□□□□□ -0.54
MCF2L-223	ENST00000473345	CCSAP	Q6IQ19	270 aa	Predicted RBP	11.67	□□□□□ -0.54
MCF2L-223	ENST00000473345	TMEM179	Q6ZVK1	233 aa		11.67	□□□□□ -0.54
MCF2L-223	ENST00000473345	RHPN1	Q8TCX5	695 aa		11.67	□□□□□ -0.54
MCF2L-223	ENST00000473345	FGD4	Q96M96	766 aa		11.67	□□□□□ -0.54
MCF2L-223	ENST00000473345	NUP88	Q99567	741 aa	Predicted RBP	11.67	□□□□□ -0.54
MCF2L-223	ENST00000473345	HOXC10	Q9NYD6	342 aa		11.67	□□□□□ -0.54
MCF2L-223	ENST00000473345	RAPGEFL1	Q9UHV5	662 aa		11.67	□□□□□ -0.54
MCF2L-223	ENST00000473345	RIPK3	Q9Y572	518 aa		11.67	□□□□□ -0.54
MCF2L-223	ENST00000473345	SMCHD1	A6NHR9	2005 aa		11.67	□□□□□ -0.54
MCF2L-223	ENST00000473345	GRXCR1	A8MXD5	290 aa		11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	PQBP1	O60828	265 aa	Known RBP	11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	MBD4	O95243	580 aa		11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	SNAI1	O95863	264 aa	Predicted RBP	11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	CLTB	P09497	229 aa		11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	EEF2	P13639	858 aa	Known RBP	11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	PBX2	P40425	430 aa		11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	CDK8	P49336	464 aa		11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	ICA1	Q05084	483 aa		11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	C12orf60	Q5U649	245 aa		11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	ABRA	Q8N0Z2	381 aa		11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	DNAJC2	Q99543	621 aa	Known RBP	11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	CRNKL1	Q9BZJ0	848 aa	Known RBP	11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	MROH8	Q9H579	483 aa		11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	XPNPEP3	Q9NQH7	507 aa		11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	PRKAG2	Q9UGJ0	569 aa		11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	ROBO3	Q96MS0	1386 aa		11.66	□□□□□ -0.54
MCF2L-223	ENST00000473345	BAZ2A	Q9UIF9	1905 aa	Known RBP	11.65	□□□□□ -0.54
MCF2L-223	ENST00000473345	USP17L12	C9JPN9	530 aa		11.65	□□□□□ -0.54
MCF2L-223	ENST00000473345	USP17L21	D6R901	530 aa		11.65	□□□□□ -0.54
MCF2L-223	ENST00000473345	APBB1	O00213	710 aa		11.65	□□□□□ -0.54
MCF2L-223	ENST00000473345	CTAGE5	O15320	804 aa		11.65	□□□□□ -0.54
MCF2L-223	ENST00000473345	FOSL2	P15408	326 aa		11.65	□□□□□ -0.54
MCF2L-223	ENST00000473345	ADD2	P35612	726 aa		11.65	□□□□□ -0.54
MCF2L-223	ENST00000473345	CERS3	Q8IU89	383 aa		11.65	□□□□□ -0.54
MCF2L-223	ENST00000473345	RIOX2	Q8IUF8	465 aa		11.65	□□□□□ -0.54
MCF2L-223	ENST00000473345	MIER1	Q8N108	512 aa		11.65	□□□□□ -0.54
MCF2L-223	ENST00000473345	MB21D1	Q8N884	522 aa		11.65	□□□□□ -0.54
MCF2L-223	ENST00000473345	KLHDC9	Q8NEP7	349 aa		11.65	□□□□□ -0.54
MCF2L-223	ENST00000473345	RNPC3	Q96LT9	517 aa	Known RBP	11.65	□□□□□ -0.54
MCF2L-223	ENST00000473345	MMP19	Q99542	508 aa		11.65	□□□□□ -0.54
MCF2L-223	ENST00000473345	TINF2	Q9BSI4	451 aa		11.65	□□□□□ -0.54
MCF2L-223	ENST00000473345	DDX49	Q9Y6V7	483 aa	Known RBP	11.65	□□□□□ -0.54
MCF2L-223	ENST00000473345	ZBED9	Q6R2W3	1325 aa		11.64	□□□□□ -0.55
MCF2L-223	ENST00000473345	SYNRG	Q9UMZ2	1314 aa		11.64	□□□□□ -0.55
MCF2L-223	ENST00000473345	CCER2	I3L3R5	266 aa		11.64	□□□□□ -0.55
MCF2L-223	ENST00000473345	VWA5A	O00534	786 aa		11.64	□□□□□ -0.55
MCF2L-223	ENST00000473345	WDR46	O15213	610 aa	Known RBP	11.64	□□□□□ -0.55
MCF2L-223	ENST00000473345	FCER1A	P12319	257 aa		11.64	□□□□□ -0.55
MCF2L-223	ENST00000473345	FAM83B	Q5T0W9	1011 aa		11.64	□□□□□ -0.55
MCF2L-223	ENST00000473345	C16orf86	Q6ZW13	317 aa		11.64	□□□□□ -0.55
MCF2L-223	ENST00000473345	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	11.64	□□□□□ -0.55
MCF2L-223	ENST00000473345	BCL11A	Q9H165	835 aa		11.64	□□□□□ -0.55
MCF2L-223	ENST00000473345	BOLA2	Q9H3K6	86 aa		11.64	□□□□□ -0.55
MCF2L-223	ENST00000473345	TBX21	Q9UL17	535 aa		11.64	□□□□□ -0.55
MCF2L-223	ENST00000473345	PPP1R9A	Q9ULJ8	1098 aa		11.64	□□□□□ -0.55
MCF2L-223	ENST00000473345	GREB1L	Q9C091	1923 aa	Predicted RBP	11.64	□□□□□ -0.55
MCF2L-223	ENST00000473345	ZNFX1	Q9P2E3	1918 aa	Known RBP	11.64	□□□□□ -0.55
MCF2L-223	ENST00000473345	DNAJC25-GNG10	A0A024R161	153 aa		11.63	□□□□□ -0.55
MCF2L-223	ENST00000473345	RARB	P10826	455 aa		11.63	□□□□□ -0.55
MCF2L-223	ENST00000473345	DNAJB2	P25686	324 aa		11.63	□□□□□ -0.55
MCF2L-223	ENST00000473345	ACLY	P53396	1101 aa		11.63	□□□□□ -0.55
MCF2L-223	ENST00000473345	ADGRE1	Q14246	886 aa		11.63	□□□□□ -0.55
MCF2L-223	ENST00000473345	RASIP1	Q5U651	963 aa		11.63	□□□□□ -0.55
MCF2L-223	ENST00000473345	CTR9	Q6PD62	1173 aa		11.63	□□□□□ -0.55
MCF2L-223	ENST00000473345	ANKRD33	Q7Z3H0	272 aa		11.63	□□□□□ -0.55
MCF2L-223	ENST00000473345	VWCE	Q96DN2	955 aa		11.63	□□□□□ -0.55
MCF2L-223	ENST00000473345	PUS7L	Q9H0K6	701 aa	Known RBP	11.63	□□□□□ -0.55
MCF2L-223	ENST00000473345	SWAP70	Q9UH65	585 aa		11.63	□□□□□ -0.55
MCF2L-223	ENST00000473345	TACC3	Q9Y6A5	838 aa		11.63	□□□□□ -0.55
MCF2L-223	ENST00000473345	MUC3A	Q02505	3323 aa		11.62	□□□□□ -0.55
MCF2L-223	ENST00000473345	PLXNA1	Q9UIW2	1896 aa		11.62	□□□□□ -0.55
MCF2L-223	ENST00000473345	RAG1	P15918	1043 aa		11.62	□□□□□ -0.55
MCF2L-223	ENST00000473345	STAT3	P40763	770 aa		11.62	□□□□□ -0.55
MCF2L-223	ENST00000473345	CDK7	P50613	346 aa		11.62	□□□□□ -0.55
MCF2L-223	ENST00000473345	FPGS	Q05932	587 aa		11.62	□□□□□ -0.55
MCF2L-223	ENST00000473345	KCNA10	Q16322	511 aa		11.62	□□□□□ -0.55
MCF2L-223	ENST00000473345	TMEM240	Q5SV17	173 aa		11.62	□□□□□ -0.55
MCF2L-223	ENST00000473345	TMEM63B	Q5T3F8	832 aa		11.62	□□□□□ -0.55
MCF2L-223	ENST00000473345	FTSJ3	Q8IY81	847 aa	Known RBP	11.62	□□□□□ -0.55
MCF2L-223	ENST00000473345	STK11IP	Q8N1F8	1099 aa		11.62	□□□□□ -0.55
MCF2L-223	ENST00000473345	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
MCF2L-223	ENST00000473345	KATNBL1	Q9H079	304 aa		11.62	□□□□□ -0.55
MCF2L-223	ENST00000473345	ARHGEF10L	Q9HCE6	1279 aa		11.62	□□□□□ -0.55
MCF2L-223	ENST00000473345	TMEM39A	Q9NV64	488 aa		11.62	□□□□□ -0.55
MCF2L-223	ENST00000473345	ASTN1	O14525	1302 aa		11.61	□□□□□ -0.55
MCF2L-223	ENST00000473345	UMODL1	Q5DID0	1318 aa		11.61	□□□□□ -0.55
MCF2L-223	ENST00000473345	CHD9	Q3L8U1	2897 aa		11.61	□□□□□ -0.55

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