RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 LRRC4BQ9NT99 713 aa3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 ORC3Q9UBD5 711 aaPredicted RBP3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 SUSD2Q9UGT4 822 aa3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 USP34Q70CQ2 3546 aa3.21□□□□□ -1.89
CCDC88A-205ENST00000426576 CNTNAP4Q9C0A0 1308 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 CAND2O75155 1236 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 XYLBO75191 536 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 ABL1P00519 1130 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 KLRC2P26717 231 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 DPP6P42658 865 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 ZAP70P43403 619 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 DGKEP52429 567 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 EXOSC10Q01780 885 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 AKAP17AQ02040 695 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 CALD1Q05682 793 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 STARD3Q14849 445 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 C14orf28Q4W4Y0 310 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 GDF6Q6KF10 455 aaPredicted RBP3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 DSG4Q86SJ6 1040 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 GOT1L1Q8NHS2 421 aaPredicted RBP3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 KHSRPQ92945 711 aaKnown RBP eCLIP3.21□□□□□ -1.97e-8■■■■□ 19.6
CCDC88A-205ENST00000426576 SLC9A7Q96T83 725 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 NSUN3Q9H649 340 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 MLXIPQ9HAP2 919 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 MKNK2Q9HBH9 465 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 DNAJC11Q9NVH1 559 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 MYO9AB2RTY4 2548 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 CABYRO75952 493 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 FLOT1O75955 427 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 SLC10A3P09131 477 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 TNNT3P45378 269 aaPredicted RBP3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 GJA8P48165 433 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 ARPP19P56211 112 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 PDE4DQ08499 809 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 RESTQ13127 1097 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 NWD1Q149M9 1564 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 TMEM132BQ14DG7 1078 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 FKBP15Q5T1M5 1219 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 NUGGCQ68CJ6 796 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 KANK3Q6NY19 840 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 EID3Q8N140 333 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 TAB3Q8N5C8 712 aaPredicted RBP3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 HDAC11Q96DB2 347 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 RPS6KC1Q96S38 1066 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 MAP7D2Q96T17 732 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 HNRNPABQ99729 332 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 CARD11Q9BXL7 1154 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 TLN2Q9Y4G6 2542 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 A0A1B0GUL7 405 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 CARNS1A5YM72 827 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 TBC1D4O60343 1298 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 ECE2O60344 883 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 CLCN1P35523 988 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 ACTN2P35609 894 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 VAMP7P51809 220 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 PRKCZQ05513 592 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 SRSF11Q05519 484 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 PAK2Q13177 524 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 HNRNPDQ14103 355 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 ZNF827Q17R98 1081 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 MARCH10Q8NA82 808 aaPredicted RBP3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 PIP4K2CQ8TBX8 421 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 URGCPQ8TCY9 931 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 NOC3LQ8WTT2 800 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 TBC1D22AQ8WUA7 517 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 VPS50Q96JG6 964 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 STMN3Q9NZ72 180 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 MUTYHQ9UIF7 546 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 CA14Q9ULX7 337 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 SIT1Q9Y3P8 196 aa3.21□□□□□ -1.9
CCDC88A-205ENST00000426576 TTC21BQ7Z4L5 1316 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 FN1P02751 2386 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 A1L4Q6 167 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 BTBD11A6QL63 1104 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 DDX11L8A8MPP1 907 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 BACH1O14867 736 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 CFHP08603 1231 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 PLCG2P16885 1265 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 VARSP26640 1264 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 SCNN1DP51172 638 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 ASIC1P78348 528 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 CYP4A11Q02928 519 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 CFHR1Q03591 330 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 CXCL9Q07325 125 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 PAN2Q504Q3 1202 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 TBCELQ5QJ74 424 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 TRIM67Q6ZTA4 783 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 MIGA2Q7L4E1 593 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 RNF25Q96BH1 459 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 WNK4Q96J92 1243 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 SPATA32Q96LK8 384 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 UBL7Q96S82 380 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 USP26Q9BXU7 913 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 CXXC1Q9P0U4 656 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 RPGRIP1LQ68CZ1 1315 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 MAP3K15Q6ZN16 1313 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 DNAJC13O75165 2243 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 EIF3CLB5ME19 914 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 C3orf80F5H4A9 247 aa3.2□□□□□ -1.9
CCDC88A-205ENST00000426576 ARHGEF9O43307 516 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 143.1 ms