RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 TMEM132BQ14DG7 1078 aa34.21■■■■□ 3.07
HMGB1-205ENST00000399494 ANO1Q5XXA6 986 aa34.21■■■■□ 3.07
HMGB1-205ENST00000399494 AMOTL1Q8IY63 956 aa34.21■■■■□ 3.07
HMGB1-205ENST00000399494 SLC4A4Q9Y6R1 1079 aa34.21■■■■□ 3.07
HMGB1-205ENST00000399494 RTP1P59025 263 aa34.2■■■■□ 3.07
HMGB1-205ENST00000399494 CTR9Q6PD62 1173 aa34.2■■■■□ 3.07
HMGB1-205ENST00000399494 PUS7LQ9H0K6 701 aaKnown RBP34.2■■■■□ 3.07
HMGB1-205ENST00000399494 KANSL2Q9H9L4 492 aa34.2■■■■□ 3.07
HMGB1-205ENST00000399494 MYH8P13535 1937 aa34.2■■■■□ 3.06
HMGB1-205ENST00000399494 SAMD1Q6SPF0 538 aaPredicted RBP34.19■■■■□ 3.06
HMGB1-205ENST00000399494 SLC39A5Q6ZMH5 540 aa34.19■■■■□ 3.06
HMGB1-205ENST00000399494 MAML3Q96JK9 1138 aa34.19■■■■□ 3.06
HMGB1-205ENST00000399494 LBHD1Q9BQE6 289 aaPredicted RBP34.19■■■■□ 3.06
HMGB1-205ENST00000399494 SLC25A27O95847 323 aa34.18■■■■□ 3.06
HMGB1-205ENST00000399494 FCER1AP12319 257 aa34.18■■■■□ 3.06
HMGB1-205ENST00000399494 IRX6P78412 446 aaPredicted RBP34.18■■■■□ 3.06
HMGB1-205ENST00000399494 DDRGK1Q96HY6 314 aa34.18■■■■□ 3.06
HMGB1-205ENST00000399494 DLL1O00548 723 aa34.17■■■■□ 3.06
HMGB1-205ENST00000399494 ZSCAN25Q6NSZ9 544 aa34.17■■■■□ 3.06
HMGB1-205ENST00000399494 FBXO28Q9NVF7 368 aa34.17■■■■□ 3.06
HMGB1-205ENST00000399494 STXBP5LQ9Y2K9 1186 aa34.17■■■■□ 3.06
HMGB1-205ENST00000399494 KBTBD13C9JR72 458 aa34.16■■■■□ 3.06
HMGB1-205ENST00000399494 HDAC1Q13547 482 aaPredicted RBP34.16■■■■□ 3.06
HMGB1-205ENST00000399494 ZBTB47Q9UFB7 747 aaPredicted RBP34.16■■■■□ 3.06
HMGB1-205ENST00000399494 ATP11BQ9Y2G3 1177 aa34.16■■■■□ 3.06
HMGB1-205ENST00000399494 RIOX2Q8IUF8 465 aa34.15■■■■□ 3.06
HMGB1-205ENST00000399494 PRKAG2Q9UGJ0 569 aa34.15■■■■□ 3.06
HMGB1-205ENST00000399494 PARP14Q460N5 1801 aa34.15■■■■□ 3.06
HMGB1-205ENST00000399494 GNL3Q9BVP2 549 aaKnown RBP eCLIP34.14■■■■□ 3.06
HMGB1-205ENST00000399494 ZNFX1Q9P2E3 1918 aaKnown RBP34.13■■■■□ 3.05
HMGB1-205ENST00000399494 POTEB2H3BUK9 544 aa34.13■■■■□ 3.05
HMGB1-205ENST00000399494 VWA5AO00534 786 aa34.13■■■■□ 3.05
HMGB1-205ENST00000399494 LRRC41Q15345 812 aa34.13■■■■□ 3.05
HMGB1-205ENST00000399494 STRBPQ96SI9 672 aaKnown RBP34.13■■■■□ 3.05
HMGB1-205ENST00000399494 GOPCQ9HD26 462 aa34.13■■■■□ 3.05
HMGB1-205ENST00000399494 ADCYAP1R1P41586 468 aa34.12■■■■□ 3.05
HMGB1-205ENST00000399494 GPATCH3Q96I76 525 aa34.12■■■■□ 3.05
HMGB1-205ENST00000399494 MMP19Q99542 508 aa34.12■■■■□ 3.05
HMGB1-205ENST00000399494 RWDD1Q9H446 243 aaPredicted RBP34.12■■■■□ 3.05
HMGB1-205ENST00000399494 PPP1R9AQ9ULJ8 1098 aa34.12■■■■□ 3.05
HMGB1-205ENST00000399494 MYH7P12883 1935 aa34.11■■■■□ 3.05
HMGB1-205ENST00000399494 MYCNP04198 464 aaPredicted RBP34.11■■■■□ 3.05
HMGB1-205ENST00000399494 PGK2P07205 417 aa34.11■■■■□ 3.05
HMGB1-205ENST00000399494 STAT3P40763 770 aa34.11■■■■□ 3.05
HMGB1-205ENST00000399494 SNX17Q15036 470 aa34.11■■■■□ 3.05
HMGB1-205ENST00000399494 FAM109BQ6ICB4 259 aaPredicted RBP34.11■■■■□ 3.05
HMGB1-205ENST00000399494 ARPP21Q9UBL0 812 aaPredicted RBP34.11■■■■□ 3.05
HMGB1-205ENST00000399494 NRBP1Q9UHY1 535 aa34.11■■■■□ 3.05
HMGB1-205ENST00000399494 A0A0C4DFX4 3053 aa34.11■■■■□ 3.05
HMGB1-205ENST00000399494 ZNF792Q3KQV3 632 aa34.1■■■■□ 3.05
HMGB1-205ENST00000399494 SBK1Q52WX2 424 aa34.1■■■■□ 3.05
HMGB1-205ENST00000399494 FAM47AQ5JRC9 791 aa34.1■■■■□ 3.05
HMGB1-205ENST00000399494 FAM83BQ5T0W9 1011 aa34.1■■■■□ 3.05
HMGB1-205ENST00000399494 REPS2Q8NFH8 660 aa34.1■■■■□ 3.05
HMGB1-205ENST00000399494 ZNF214Q9UL59 606 aaPredicted RBP34.1■■■■□ 3.05
HMGB1-205ENST00000399494 DIS3Q9Y2L1 958 aaKnown RBP34.1■■■■□ 3.05
HMGB1-205ENST00000399494 COL11A1P12107 1806 aaPredicted RBP34.09■■■■□ 3.05
HMGB1-205ENST00000399494 GSG1L2A8MUP6 293 aa34.09■■■■□ 3.05
HMGB1-205ENST00000399494 FERMT2Q96AC1 680 aa34.09■■■■□ 3.05
HMGB1-205ENST00000399494 TINF2Q9BSI4 451 aa34.09■■■■□ 3.05
HMGB1-205ENST00000399494 ECHDC1Q9NTX5 307 aa34.09■■■■□ 3.05
HMGB1-205ENST00000399494 KCTD2Q14681 263 aa34.08■■■■□ 3.05
HMGB1-205ENST00000399494 TRIM60Q495X7 471 aa34.08■■■■□ 3.05
HMGB1-205ENST00000399494 C1orf53Q5VUE5 145 aa34.08■■■■□ 3.05
HMGB1-205ENST00000399494 RAD21O60216 631 aa34.07■■■■□ 3.04
HMGB1-205ENST00000399494 RASA1P20936 1047 aa34.07■■■■□ 3.04
HMGB1-205ENST00000399494 ANKRD45Q5TZF3 282 aa34.07■■■■□ 3.04
HMGB1-205ENST00000399494 GIMAP6Q6P9H5 292 aa34.07■■■■□ 3.04
HMGB1-205ENST00000399494 TAL1P17542 331 aaPredicted RBP34.06■■■■□ 3.04
HMGB1-205ENST00000399494 OSBP2Q969R2 916 aa34.06■■■■□ 3.04
HMGB1-205ENST00000399494 NYAP2Q9P242 653 aa34.06■■■■□ 3.04
HMGB1-205ENST00000399494 LAMA2P24043 3122 aaKnown RBP34.06■■■■□ 3.04
HMGB1-205ENST00000399494 SMCHD1A6NHR9 2005 aa34.06■■■■□ 3.04
HMGB1-205ENST00000399494 LTBP2Q14767 1821 aa34.05■■■■□ 3.04
HMGB1-205ENST00000399494 KBTBD3Q8NAB2 608 aa34.05■■■■□ 3.04
HMGB1-205ENST00000399494 XPNPEP3Q9NQH7 507 aa34.05■■■■□ 3.04
HMGB1-205ENST00000399494 PRDM5Q9NQX1 630 aaPredicted RBP34.05■■■■□ 3.04
HMGB1-205ENST00000399494 PHF24Q9UPV7 400 aa34.05■■■■□ 3.04
HMGB1-205ENST00000399494 RARBP10826 455 aa34.04■■■■□ 3.04
HMGB1-205ENST00000399494 COPB2P35606 906 aa34.04■■■■□ 3.04
HMGB1-205ENST00000399494 SHHQ15465 462 aa34.04■■■■□ 3.04
HMGB1-205ENST00000399494 SH3RF1Q7Z6J0 888 aa34.04■■■■□ 3.04
HMGB1-205ENST00000399494 STK11IPQ8N1F8 1099 aa34.04■■■■□ 3.04
HMGB1-205ENST00000399494 BADQ92934 168 aa34.04■■■■□ 3.04
HMGB1-205ENST00000399494 NUP88Q99567 741 aaPredicted RBP34.04■■■■□ 3.04
HMGB1-205ENST00000399494 MKNK2Q9HBH9 465 aa34.04■■■■□ 3.04
HMGB1-205ENST00000399494 PDLIM7Q9NR12 457 aa34.04■■■■□ 3.04
HMGB1-205ENST00000399494 TRIM43BA6NCK2 446 aa34.03■■■■□ 3.04
HMGB1-205ENST00000399494 F5H6K3 240 aa34.03■■■■□ 3.04
HMGB1-205ENST00000399494 ZNF865P0CJ78 1059 aaPredicted RBP34.03■■■■□ 3.04
HMGB1-205ENST00000399494 KLRC3Q07444 240 aa34.03■■■■□ 3.04
HMGB1-205ENST00000399494 TRIM43Q96BQ3 446 aaPredicted RBP34.03■■■■□ 3.04
HMGB1-205ENST00000399494 SLF1Q9BQI6 1058 aa34.03■■■■□ 3.04
HMGB1-205ENST00000399494 GREB1LQ9C091 1923 aaPredicted RBP34.02■■■■□ 3.04
HMGB1-205ENST00000399494 MINDY4BA8MYZ0 360 aa34.02■■■■□ 3.04
HMGB1-205ENST00000399494 GUCD1Q96NT3 240 aa34.02■■■■□ 3.04
HMGB1-205ENST00000399494 RNF113AO15541 343 aaKnown RBP34.01■■■■□ 3.03
HMGB1-205ENST00000399494 PGK1P00558 417 aa34.01■■■■□ 3.03
HMGB1-205ENST00000399494 TLE2Q04725 743 aa34.01■■■■□ 3.03
HMGB1-205ENST00000399494 C9orf50Q5SZB4 431 aa34.01■■■■□ 3.03
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms